>ref|NP_223990.1| putative [Helicobacter pylori J99]
          Length = 1164

 Score = 1286 bits (3328), Expect = 0.0
 Identities = 663/837 (79%), Positives = 707/837 (84%), Gaps = 48/837 (5%)

Query: 1   MLKEYLESIKDLTPEKNELTHRPSLYNLLNQLKNHFNKEFKIEHEPER-KQGSQPDFRVS 59
           MLKEYLESIKDLTPE NELTHRPSLYNLL  LKN F KE KIEHEP R KQG QPDFRVS
Sbjct: 1   MLKEYLESIKDLTPESNELTHRPSLYNLLKNLKNDFKKELKIEHEPNRDKQGGQPDFRVS 60

Query: 60  YQGINIGYIENKRAGTNLSQLLKSEKSDQILKYLELNPNLMLTDYLNFMWVGKDENNEPL 119
           YQG+NIGYIENKR GT+L+QLL+S   DQILKYLELNPNLMLTDYLNF+WVGKDE N+P 
Sbjct: 61  YQGLNIGYIENKRVGTDLNQLLES---DQILKYLELNPNLMLTDYLNFVWVGKDEENKPS 117

Query: 120 IKKEISVASLDELSKPLKPNPQTERDLIELFKSFFNHEAAPITNAKDFATHLSPRTKYLK 179
            K++IS+ASL+EL K LKPNPQTERDLIELF+ FFNHEAAPITNAKDFA  LS  T+YLK
Sbjct: 118 TKRKISIASLEELPK-LKPNPQTERDLIELFRGFFNHEAAPITNAKDFANALSAPTRYLK 176

Query: 180 DALIKYQEKAQVSSIFNNFKEYLYEELSFEDFSDALAQTLTYSLFLAKLNHPSEKINLDN 239
           DALI YQ+  QVSSIF NFKEYLYEELSFEDFSDA AQTLTYSLFLAKLNHP EKI+L+N
Sbjct: 177 DALIAYQKDDQVSSIFKNFKEYLYEELSFEDFSDAFAQTLTYSLFLAKLNHPFEKIDLNN 236

Query: 240 VRSLIPKNFAVIREMADFLKKLDEIKEIQWLLNEILSSINHVDMDSILKDLNDDKDPYLH 299
           VRS IPKNFAVIREMADFLKKLD I+EIQWLLNEIL  INHVDM  I+KDLNDDKDPYLH
Sbjct: 237 VRSSIPKNFAVIREMADFLKKLDAIQEIQWLLNEILILINHVDMGPIIKDLNDDKDPYLH 296

Query: 300 FYETFLSTYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALDNENIKL 359
           FYETFLS YDPKLRE KGVYYTPDSVV+FIINALDSLLKTHFKDAPLGLKSALDN+NIKL
Sbjct: 297 FYETFLSAYDPKLREKKGVYYTPDSVVEFIINALDSLLKTHFKDAPLGLKSALDNKNIKL 356

Query: 360 LDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYAIAHLNL 419
           LDFATGTGTFLLEAFRKALE RKTSDGG STKEDKYQNLLKQFYGFEYLIAPYAIAHLNL
Sbjct: 357 LDFATGTGTFLLEAFRKALEVRKTSDGGASTKEDKYQNLLKQFYGFEYLIAPYAIAHLNL 416

Query: 420 SQAFKEEFKKPLKENDALQIILTNTLIQPSEIIAYRGLSPIFEKELSNAQEIKKNENILI 479
           SQAFKEEFKKPLKEND L+IILTNTLIQPSEIIAYRGL+PIFEKELSNAQEIKKNENILI
Sbjct: 417 SQAFKEEFKKPLKENDTLKIILTNTLIQPSEIIAYRGLNPIFEKELSNAQEIKKNENILI 476

Query: 480 ITGNPPYSGASENKGLFEWEVKATYGIDPKFQTIEIEKNVKLADKIQTLLSSVQIQKQSG 539
           ITGNPPYSGASENKGLFEWEVKATYGI+P+FQTIEIEKNVKL DKIQTLL +VQ QK+SG
Sbjct: 477 ITGNPPYSGASENKGLFEWEVKATYGIEPEFQTIEIEKNVKLTDKIQTLLKNVQKQKESG 536

Query: 540 SKNDLKKLKSLHSKYKLQDEKNPKWLLDDYVKFMRFAQNKIESLGHGLFGFISNNAFLDN 599
           SKN LK+LK+LHSKYKLQ EKNPKWLLDDYVKFMRFAQNKIE LGHGLFGFISNNAFLDN
Sbjct: 537 SKNALKELKNLHSKYKLQKEKNPKWLLDDYVKFMRFAQNKIELLGHGLFGFISNNAFLDN 596

Query: 600 PTFRGLRRSLLECYDELYILNLHGNARKKEKTPQGAKDENVFNIKQGVSINLFVKNPQVV 659
           PTFRGLRRSLLECYDELYILNLHGNAR+KE+TPQGA DENVFNI QGVSINLFVK  Q  
Sbjct: 597 PTFRGLRRSLLECYDELYILNLHGNARRKEETPQGATDENVFNIMQGVSINLFVKKAQAT 656

Query: 660 KQKIHYYDVYGQRTEKYAFLAQNDLNSIEWLEIAPRGPFYLLLPLETPLLDEYEQGFSVQ 719
           K KI YYDVYG+R EKYAFLAQNDL+ IEWLE+APR PFYLL+P +TPLL+EYEQGFSVQ
Sbjct: 657 KPKICYYDVYGERAEKYAFLAQNDLDRIEWLELAPREPFYLLIPQKTPLLEEYEQGFSVQ 716

Query: 720 EMFQIGSTGICSQRDHVVFHKDKESL----LKLLKDFSTLEPSELRRIYNIKKDGRDWRL 775
           EMFQI S GI + +D +    + ESL    LK   +F+                      
Sbjct: 717 EMFQISSVGIVTGKDKIFIANNTESLKEQVLKYCNEFN---------------------- 754

Query: 776 EYAIKDVKANANNLEEYIVSCQYRPFDFYYTYYTGKSKSFIAYPRGEVFKHMLPPPP 832
           E  +KD+               YRPFD    YY  K    +   R   FKHMLPPPP
Sbjct: 755 EQCVKDI--------------HYRPFDIRKVYYDTKK---LERARENTFKHMLPPPP 794