>ref|NP_224044.1| putative [Helicobacter pylori J99]
          Length = 792

 Score = 1162 bits (3007), Expect = 0.0
 Identities = 606/863 (70%), Positives = 675/863 (77%), Gaps = 78/863 (9%)

Query: 1   MLSYKHSNATLP---ILWGEAKRGDFDDLDKAFTQLLLTIGKHRLYTHHTPPYLCAFNAF 57
           MLSY+H NATLP   ILWGEAKRGDFDDLDKAFTQLLLTIGKH+LYTHHTPPYLCAFNAF
Sbjct: 1   MLSYQHPNATLPVLPILWGEAKRGDFDDLDKAFTQLLLTIGKHKLYTHHTPPYLCAFNAF 60

Query: 58  KMEFIAFDDTITSFFYKSDIDFSITPSNHNTEGFKHALDAFKAMSKSH-KFVFDFKTQSQ 116
           +MEFIAF+DTITSFFYKSDIDFSI PSNHNTEGFKHALDAFKAM K H K VFDFKTQSQ
Sbjct: 61  RMEFIAFNDTITSFFYKSDIDFSIPPSNHNTEGFKHALDAFKAMCKPHNKRVFDFKTQSQ 120

Query: 117 ECKEFIKNRLNSSHLLSKIQIDKNNFFTIYQKWLEIVKPTIDINWEVAKTKDILDADYYL 176
           ECKEFIK+ LNSSHL +KIQIDKNNFFTIYQKWLEIVKPTI I+WE+AK + ILDADYYL
Sbjct: 121 ECKEFIKDHLNSSHLHNKIQIDKNNFFTIYQKWLEIVKPTIKIDWELAKAEGILDADYYL 180

Query: 177 ADLLSDGDKTIIEKLHTILRSSHYKLNRGVNELGKMDF---MEVGFTDSQQAHQEFWSVY 233
           ADLLSDGDKTIIEKL TIL+SSHY+L  G N L K+      +VGFTD+QQAHQEFWSVY
Sbjct: 181 ADLLSDGDKTIIEKLRTILKSSHYELKWGSNTLNKLGLEGITKVGFTDNQQAHQEFWSVY 240

Query: 234 ERPPKREFQASILERRDLLVPSDVRERKGAFFTPKIWVEKSQEYLAKALGQDYQEDCIIW 293
           ERPPK EFQASILERRDLLVPSDVRERKGA+FTPKIWVEKSQEYLAKALGQDYQED IIW
Sbjct: 241 ERPPKSEFQASILERRDLLVPSDVRERKGAYFTPKIWVEKSQEYLAKALGQDYQEDYIIW 300

Query: 294 DCAGGTGNLLRGLLNKANLYLSTLDHNDVAIVKDLAAKNHLKLLENHVFQFDFLNDDFFS 353
           DCAGGTGNLLRGLLNKANLYLSTLDHNDVAI+KDLA+KNHLK+LEN VFQFDFLNDDFFS
Sbjct: 301 DCAGGTGNLLRGLLNKANLYLSTLDHNDVAIIKDLASKNHLKMLENQVFQFDFLNDDFFS 360

Query: 354 DKTPKSLQEILKDKEKRKKLIIYINPPYAEAGNKSKMSGTGEHKAKVARDNLICEKYKNE 413
           DKTPKSLQEILKD+EKRKKLIIYINPPYAEA +    SGTG++K  VAR NLIC+KYK+E
Sbjct: 361 DKTPKSLQEILKDEEKRKKLIIYINPPYAEATSAKTPSGTGKNKDLVARGNLICKKYKDE 420

Query: 414 LGKANNEVFAQFFMRIYKELNGVILASFSTLKNLQGSNFKKFREIFKAKFLEGFMVPADT 473
           L KANNE+FAQFFMRIYKELNG I+ASFSTLK L  S+FK        KF E F      
Sbjct: 421 LHKANNELFAQFFMRIYKELNGCIMASFSTLKYLNSSHFK--------KFREVF------ 466

Query: 474 FDNVRGQFPIGFLVWDTSSILPKENPLNLGGNSKEEKQNSNLILDQDNLKDNPLKERFCL 533
               + +F  GF+V       P ++  N+ G      Q     L  D     PLK     
Sbjct: 467 ----KAKFLEGFMV-------PADSFDNVTG------QFPIGFLVWDTATPPPLK----- 504

Query: 534 LDINAPNRKMCSQSRTRTKGTQKHSTAAPFETPLHTVSLEIFDSFGGFLGSKKIYTHTID 593
                                           P +  +LE+FDS GGFLG K  +   +D
Sbjct: 505 --------------------------------PTNAFNLEVFDSLGGFLGYKT-FKPIVD 531

Query: 594 KMLTLADYLQKFQPTKRDTIFGYLDPGRNSFQHQNLIHISIIDKSKQSHVKYFPIIATTI 653
           K+  +  +++ +   K   I G+++     FQ+   +   ++++    H  Y  + +T +
Sbjct: 532 KVKNINAWIKNYDNKKAQEIMGFIENPTPDFQNNKFL--CVLNRQGTRHNNYLGLTSTNL 589

Query: 654 LLVSVFFSIRHCIKATWQNDRDQFYAPYDDAFQDDSEFKNNCLIFMLFHTQNRITTAQGT 713
           L+ +++FSIRHCIKATWQNDRDQFYAPYDDAFQDDSEFKNNCL FMLFHTQNRIT  QGT
Sbjct: 590 LIGAIYFSIRHCIKATWQNDRDQFYAPYDDAFQDDSEFKNNCLAFMLFHTQNRITATQGT 649

Query: 714 NHFIPFSETEVNAKERYSSHALLEFLKGEIKELKENDSLFLSAKKENKPLKFSPSASKVF 773
           NHFIPFSE EV++KERY SHALL+FLKGEIKE K++DSLFL+AKKENKPLKFS SASKVF
Sbjct: 650 NHFIPFSEDEVDSKERYLSHALLDFLKGEIKEPKKSDSLFLNAKKENKPLKFSSSASKVF 709

Query: 774 DASREVYRYYHTQDFTNRPYNANASLYDIKEFFQGRNKQGKLNLPAKAKDEYYKQLYANL 833
           DA RE+YRYYHTQDF + PYNANASLYDIKEFFQGRNKQG+LN P KAKDEYYKQLYANL
Sbjct: 710 DAGREIYRYYHTQDFIHTPYNANASLYDIKEFFQGRNKQGRLNSPTKAKDEYYKQLYANL 769

Query: 834 QDALKDLAKEIQPKVYEYGFLRE 856
           Q ALKDLAKEIQPKVYEYGFLRE
Sbjct: 770 QYALKDLAKEIQPKVYEYGFLRE 792