>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
            [Helicobacter pylori J99]
          Length = 1252

 Score = 1598 bits (4138), Expect = 0.0
 Identities = 863/1292 (66%), Positives = 976/1292 (74%), Gaps = 77/1292 (5%)

Query: 10   NTNYPNQEQLKAFETAFDAFLET-NQQENENHQNDAFNDLLKGVFKYKVKPTKKIDSTIL 68
            N   P +E ++ FE   ++ LE   +Q++E  Q +  N  LK  + Y     +K+DS I 
Sbjct: 16   NPQEPKKETIENFEKEINSLLENVPRQDDEEFQKNEINKFLKNAYGYDCNTYEKVDSVIY 75

Query: 69   NENNEVEVIIEFKALKNPNEFIKKGDLNV-KAFHESLLSYLTE-RKEGNNNLKHLILATI 126
             +  EV V+IE KAL N  EF K  +  + KAF + +L +L E  KE NN+LKH I+   
Sbjct: 76   VDK-EVRVLIEVKALNNKTEFPKNRENPLSKAFCQMVLYFLEEIEKEKNNSLKHTIICNA 134

Query: 127  KELYIIDANEFEVFNKDKEIENAFKNCHDRKGNDTRTKAFYDACQKRLNE-FDRSLKYHY 185
             E ++ D  +     +DK I+  +KN   ++G D+    FY   ++ L E F   L+Y +
Sbjct: 135  HEFFLFDCKDLLSLKEDKRIKKFYKNYAKKEGTDSSKPKFYKDLEQFLQEDFQGELRYTH 194

Query: 186  IPLKKE--NLALIYQALSPNFLLKIPKYSDANTLNKDFYEELLYILGLEEQNDKGKILIK 243
              L  +   L LIYQ LS   LLK  +  DANTLNKDFYEELLYILGLEEQNDKGKILIK
Sbjct: 195  FNLSDDFKELPLIYQVLSQEVLLKQKRTLDANTLNKDFYEELLYILGLEEQNDKGKILIK 254

Query: 244  PSRTQNSLSDALKKEYKNLDDEEVMALLIAWNNRILFLRLLESLLISFKHFENP--FLTT 301
            PSRT+NSLS ALK++YKNLDDEEVMALLIAWNNRILFLRLLESLLISF+HFE    FLTT
Sbjct: 255  PSRTKNSLSGALKEKYKNLDDEEVMALLIAWNNRILFLRLLESLLISFEHFEKERSFLTT 314

Query: 302  ENFENFNDLNTLFFEVLAKKNSERLPEIKEDKILEKIPYLNSSLFDKTPLELKGHEIKLL 361
             NF++FN LNTLFFEVLAKKNSERLPEIKE+KIL KIPYLNSSLFDKTPLELKGHEIKLL
Sbjct: 315  GNFKDFNALNTLFFEVLAKKNSERLPEIKENKILGKIPYLNSSLFDKTPLELKGHEIKLL 374

Query: 362  DNKKLEIYKNSVLKKHKDYQKEKP-LPLLKYLFKFLRLYKFTTTPKDIKDNTDTSESRLI 420
            DNKKLEIYKNSVLKKH++YQK+K  LPLL+Y FKFL LYKFTTTPKDIKDNTDTSESRLI
Sbjct: 375  DNKKLEIYKNSVLKKHENYQKDKASLPLLEYFFKFLHLYKFTTTPKDIKDNTDTSESRLI 434

Query: 421  NPSVLGLVFEKLNGYKEGSFYTPSFITSYMCKESITPIVLDKFNAIYQWDCENLKALRGE 480
            NPSVLGLVFEKLNGYKEGSFYTPSFITSYMCKESIT IVLDKFN  Y  +C+ LK L+  
Sbjct: 435  NPSVLGLVFEKLNGYKEGSFYTPSFITSYMCKESITTIVLDKFNQKYNIECDKLKELKNY 494

Query: 481  IDRNFSNEKAKEYLNTLLTLRICDPAVGSGHFLVSALNEMVRVAYELGLIASLYRYDLKL 540
            +  ++  +K KEYL  LLTLRICDPAVGSGHFLVSALNEMV +AYELGLIASL+RY L L
Sbjct: 495  LKNSYKEDKRKEYLQLLLTLRICDPAVGSGHFLVSALNEMVLIAYELGLIASLHRYSLTL 554

Query: 541  ENDEIIIHHTPTGEIFNYIKPDSENDPHHHIQKELFNLKKSIIENCLFGVDINPNSCEIT 600
            ENDEIIIH+TPTGEIFNY KP  ENDPHHHIQKELF LKKSIIENCLFGVDINPNSCEIT
Sbjct: 555  ENDEIIIHYTPTGEIFNYKKPLRENDPHHHIQKELFELKKSIIENCLFGVDINPNSCEIT 614

Query: 601  KLRLWIELLKYSYYIFEKGKNTNALETLPNIDINIKCANSLISRFALKDKALLKSEKNKN 660
            KLRLWIELLKYSYYIFE+GKNTNALETLPNIDINIKCANSLISRF L D      +K  N
Sbjct: 615  KLRLWIELLKYSYYIFEEGKNTNALETLPNIDINIKCANSLISRFNLNDDL----KKIPN 670

Query: 661  LEYSIAEYKELVKIYKDPKILETLTHPIKDSNAVRKYAKERLYQELKQNPNKDFKKALND 720
            ++  I EYK+LV  YKDP  L    +P+  ++ + K                        
Sbjct: 671  IKKKIQEYKDLVAQYKDPNPL----YPLNKADLINK------------------------ 702

Query: 721  RIEKIKKAFKLTLNPPPKELKFKKFLKEHLELYG------KSILEEANYNGLELEALALE 774
             I+ +K  F LTL  P  + + +K +++H++ Y       KS+L+  NY           
Sbjct: 703  -IQDLKNTFSLTLKDPKTKAELEKTIEKHIKKYNFFALDDKSLLDGLNYF---------- 751

Query: 775  KQMANLFFDYRPYPKLDKSDKVVGLEHFNRY--VLTSYKDLQD--ENERYANALEWRFEF 830
              + +LF   +  PK ++       E F  Y  +    K L D      Y NA EWRFEF
Sbjct: 752  --IPSLFGTLKLSPKEEE-------EAFASYGRIRALRKKLDDALSGGEYQNAFEWRFEF 802

Query: 831  PEVLDDEGDFSGFDCIIGNPPYIRQEHIKDLKPLLEKQYQDFYNSTADIYTYFFALAFHL 890
            PEVLDDEGDF GFDCIIGNPPYIRQE IKDLKPLLEKQYQDFYNSTADIYTYFFAL+FHL
Sbjct: 803  PEVLDDEGDFLGFDCIIGNPPYIRQEQIKDLKPLLEKQYQDFYNSTADIYTYFFALSFHL 862

Query: 891  LKEKGFSAFITSNKYTRAKYGAKLREWLLKKTTIVSYMELNALKVFESAAVDTSIIHFIK 950
            L+EKGFSAFITSNKY RAKYGAKLREWLLKKTT+VSYMELNALKVFESAAVDTSIIHFIK
Sbjct: 863  LREKGFSAFITSNKYARAKYGAKLREWLLKKTTLVSYMELNALKVFESAAVDTSIIHFIK 922

Query: 951  QTPSKESEFKYYEPTPNDKDDLKSTPHLLMKQNVLSTESFIFANATLLDLRDKIESVGTP 1010
            Q P KES+FKYYEPTP+DKDDLKSTP+L MKQN LSTESFIFANATLLDLRDKIESVGTP
Sbjct: 923  QPPLKESDFKYYEPTPDDKDDLKSTPYLSMKQNALSTESFIFANATLLDLRDKIESVGTP 982

Query: 1011 LKDWDIQINYGIKTGANEAFIIPTEKREEILNACKTQEERERTERLIKPILRGKDIKRYS 1070
            LKDWDIQINYGIKTGANEAFIIPTEKR+EILNACKTQEERERTERLIKPILRGKDIKRYS
Sbjct: 983  LKDWDIQINYGIKTGANEAFIIPTEKRDEILNACKTQEERERTERLIKPILRGKDIKRYS 1042

Query: 1071 YEWAHLWVINTHNGYTSSLKSKIPPIDIEKYPAIKAHLDAHYDTIATRCDQGDTPYHLRN 1130
            YEWA  W+INTHNGYTS+LKSKIPPIDIEKYPA KAHLDAHYDTIATRCDQGDTPYHLRN
Sbjct: 1043 YEWAGEWLINTHNGYTSNLKSKIPPIDIEKYPATKAHLDAHYDTIATRCDQGDTPYHLRN 1102

Query: 1131 CAYLEDFEKEKIVWASVGFVEYCMIPGL-LILDTNYFFEVSKFGNTKNYLLGLLNSKLLT 1189
            CAYLEDFEKEKIV+       Y +     + L+   F  VS   N K  L  LLNSKL+T
Sbjct: 1103 CAYLEDFEKEKIVYPETSQGAYFIYENSGIFLEKTVFMIVSDAYNLK-LLTALLNSKLIT 1161

Query: 1190 FWLK--AKNTPLGDMGAYRNYKYNIMELPMVKITAKNKKIADKIIALVDKILQAKEKDPK 1247
            F+ K       LG  G Y+  K+ + ++P+ +IT KN+++ADKI    ++IL  K KDPK
Sbjct: 1162 FYFKNFCGGCILGKSG-YQYNKHALEKIPIPQITEKNQELADKITDCAEQILALKAKDPK 1220

Query: 1248 ANTQKLEKEIDALVYQLYHLTDEEIKIIEEGQ 1279
            ANTQKLEKEIDALVYQLYHLTDEEIK IE+GQ
Sbjct: 1221 ANTQKLEKEIDALVYQLYHLTDEEIKTIEDGQ 1252