>ref|NP_222868.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
           pylori J99]
          Length = 377

 Score =  653 bits (1685), Expect = 0.0
 Identities = 319/377 (84%), Positives = 346/377 (91%), Gaps = 5/377 (1%)

Query: 1   MSIIIPIVIAFDNHYAMPAGVSLYSMLACAKTEHPQSQN-----DSEKLFYKIHCLVDNL 55
           MSI IPIVIAFDNHYA+PAGVSLYSMLACAK+E+P+SQN     D++KLFYKIHCLVDNL
Sbjct: 1   MSITIPIVIAFDNHYAIPAGVSLYSMLACAKSENPKSQNPQLQSDNKKLFYKIHCLVDNL 60

Query: 56  SLENQSKLKETLAPFSAFSSLEFLDISTPNLHATPIEPSAIDKINEAFLQLNIYAKTRFS 115
           SLENQ KLKETL PFSAF+S++FLDISTPNL+ T +EPS IDKI+EAFLQLNIYAKTRFS
Sbjct: 61  SLENQQKLKETLVPFSAFASVDFLDISTPNLYTTSVEPSVIDKIHEAFLQLNIYAKTRFS 120

Query: 116 KMVMCRLFLASLFPQYDKIIMFDADTLFLNDVSESFFIPLDGYYFGAAKDFASDKSPKHF 175
           KMVMCRLFLASLFPQYDKIIMFDADTLFLNDVSESFFIPLD YYFGAAKDF+S KS KHF
Sbjct: 121 KMVMCRLFLASLFPQYDKIIMFDADTLFLNDVSESFFIPLDSYYFGAAKDFSSPKSLKHF 180

Query: 176 QIVREKDPRQAFSLYEHYLNESDMQIIYESNYNAGFLVVNLKLWRADHLEERLLNLTHQK 235
           Q  RE++PRQ FSLYEHYL E DMQII E++YN GFL+VNLKLWRAD LEE LLNLTHQK
Sbjct: 181 QTEREREPRQKFSLYEHYLKEKDMQIICENHYNVGFLIVNLKLWRADKLEEHLLNLTHQK 240

Query: 236 GQCVFYPEQDLLTLACYQKVLILPYIYNTHPFMANQKRFIPDKKEIVMLHFYFVGKPWVL 295
           GQCVF PEQDLLTLACYQKVL LPYIYN HPFMANQKRFIP+++EI+MLHFYFVGKPW+L
Sbjct: 241 GQCVFCPEQDLLTLACYQKVLQLPYIYNAHPFMANQKRFIPNQQEIIMLHFYFVGKPWIL 300

Query: 296 PTFSYSKEWHETLLKTPFYAEYSVKFLKQMTECLSLKDKQKTFEFLAPLLNKKTLLEYVF 355
           PT  YSKEWHE LLKTPFYAEYSVKFLKQMTECLSL+DKQKTFEFLAPLLN KTLLEYVF
Sbjct: 301 PTALYSKEWHEILLKTPFYAEYSVKFLKQMTECLSLQDKQKTFEFLAPLLNPKTLLEYVF 360

Query: 356 FRLNRIFKRLKEKFFNS 372
           FRL++IFKRLKE+F NS
Sbjct: 361 FRLSKIFKRLKERFLNS 377