>ref|NP_223749.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
           pylori J99]
          Length = 398

 Score =  218 bits (555), Expect = 2e-58
 Identities = 127/351 (36%), Positives = 186/351 (52%), Gaps = 32/351 (9%)

Query: 5   IPIAFAFDKNYLKTGAVALYSLLHA-HRAVEGVFFSIYIFYSGLNEDDLNRLQETIKPFK 63
           IPIAFAFDKNYL      +YSLL +  +A + + ++++    GLNE+D  +L +  +PFK
Sbjct: 16  IPIAFAFDKNYLIPAGACIYSLLESIAKANKKIRYTLHALVVGLNEEDKTKLNQITEPFK 75

Query: 64  HFAALKCQDISATLDSLPTITDSAWVNRYSRMILVKYLLPSLFPQYSKMIWSDVDVVFCR 123
            FA L+ +DI   LD++P   D  +  R+S+M+LVKY L  LFP+YSKM+WSDVDV+FC 
Sbjct: 76  EFAVLEVKDIEPFLDTIPNPFDEDFTKRFSKMVLVKYFLADLFPKYSKMVWSDVDVIFCN 135

Query: 124 AFADDFIALDTSESFHLSGVISLVSQSVTEGFWFCNLDYMRKHSFTQQVLEKFKIQVMRP 183
            F+ DF+ +  ++  +  GV+ +    + EGF FCNLDY RK +FT ++ E  K    + 
Sbjct: 136 EFSADFLNIKENDENYFYGVLEVEKHHMMEGFLFCNLDYQRKKNFTLRMHELLKGNEAKG 195

Query: 184 YFKEPTLIHHLHAYIKELPLHYCVLPYYYQEELDDLRHKASLPIRFEIIHQDKPNEFIHR 243
              E          +K L + YCV PYYY  +                   D  N +++ 
Sbjct: 196 ---ELDFTKWCWPNMKALGIEYCVFPYYYTIK-------------------DFSNAYLNE 233

Query: 244 QQIPYEISQIQNILSNPIIMHYESDKDALGIYNGKPWEFPLGNQYHLWLEMLAHTPFWKD 303
               Y+   I     NP I+HY++   A+     KPW++P G +  LWL  LA TPF  D
Sbjct: 234 N---YK-KTILEARENPTIIHYDAWWGAV-----KPWDYPFGLKADLWLNALAKTPFMSD 284

Query: 304 FTLEMQKKRIEYRDIAQKIHYFSQDKRLYEVSIRSIKVFASHYYNLVVKER 354
           +T +M      Y     + HYFS  K   E+  ++  +F   Y  +V KER
Sbjct: 285 YTKKMHTNESFYTTKMAEQHYFSSVKSSKEIVFKAPYLFFKSYLFVVFKER 335