>ref|NP_223979.1| putative Outer membrane protein [Helicobacter pylori J99]
          Length = 696

 Score = 1108 bits (2865), Expect = 0.0
 Identities = 573/704 (81%), Positives = 610/704 (86%), Gaps = 23/704 (3%)

Query: 1   MKKSLL-LSLSLIASLSRAEDDGFYTSVGYQIGEAVQQVKNTGALQNLADRYDNLNNLLN 59
           +KKSL  LS SL+ASLSRAEDDGFY SVGYQIGEAVQ+VKNTGALQNLADRYDNL+NLLN
Sbjct: 3   IKKSLFALSFSLMASLSRAEDDGFYMSVGYQIGEAVQKVKNTGALQNLADRYDNLSNLLN 62

Query: 60  QYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQVIA 119
           QYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQVIA
Sbjct: 63  QYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQVIA 122

Query: 120 LFIGCGPGPT------NNQSYQSFGNTPALN------GTTTTCNQAYGTGPNGILSIDEY 167
             I CGPGP        N   +SF NTP  +       TTTTCN A   GPNGILS  EY
Sbjct: 123 FGISCGPGPNLGPEHLENGGVRSFDNTPNYSYNTGSGTTTTTCNGASNVGPNGILSSSEY 182

Query: 168 QKLNQAYQIIQTALNQNQGGGMPALNDTTKTGVVNIQQTNYRTTTQNNIIEHYYTENGKE 227
           Q LN AYQ IQTALNQNQGGGMPALN ++K  VVNI QT     T+N   E+ Y +    
Sbjct: 183 QVLNTAYQTIQTALNQNQGGGMPALN-SSKNMVVNINQT----FTKNPTTEYTYPDGNGN 237

Query: 228 IPVSYSGGSSFSPTIQLTYHNNAENLLQQAATIMQVLITQKPHVQTSNGGKAWGLSSTPG 287
               YSGGSS    ++++  N+AENLLQQAATI+ VL TQ PHV  + GG AWG     G
Sbjct: 238 Y---YSGGSSIPIQLKISSVNDAENLLQQAATIINVLTTQNPHV--NGGGGAWGFGGKTG 292

Query: 288 NVMDIFGPSFNAINEMIKNAQTALAKTQQLNANENAQITQPNNFNPYTSKDKGFAQEMLN 347
           NVMDIFG SFNAINEMIKNAQ  L KTQQLNANEN QITQP+NFNPYTSKD  FAQEMLN
Sbjct: 293 NVMDIFGDSFNAINEMIKNAQAVLEKTQQLNANENTQITQPDNFNPYTSKDTQFAQEMLN 352

Query: 348 RAEAQAEILNLAKQVANNFHSIQGPIQGDLEECKAGSAGVITNNTWGSGCAFVKETLNSL 407
           RA AQAEIL+LA+QVA+NFHSIQGPIQ DLEEC AGSAGVI +NT+GSGCAFVKETLNSL
Sbjct: 353 RANAQAEILSLAQQVADNFHSIQGPIQQDLEECTAGSAGVINDNTYGSGCAFVKETLNSL 412

Query: 408 EQHTAYYGNQVNQDRALAQTILNFKEALNTLNKDSKAINSGISNLPNAKSLQNMTHATQN 467
           EQHTAYYGNQVNQDRAL+QTILNFKEAL+TL  DSKAINSGISNLPNAKSLQNMTHATQN
Sbjct: 413 EQHTAYYGNQVNQDRALSQTILNFKEALSTLGNDSKAINSGISNLPNAKSLQNMTHATQN 472

Query: 468 PNSPEGLLTYSLDSSKYNQLQTIAQELGKNPFRRFGVIDFQNNNGAMNGIGVQVGYKQFF 527
           PNSPEGLLTYSLD+SKYNQLQT+AQELGKNPFRR GVI++QNNNGAMNGIGVQ GYKQFF
Sbjct: 473 PNSPEGLLTYSLDTSKYNQLQTVAQELGKNPFRRIGVINYQNNNGAMNGIGVQAGYKQFF 532

Query: 528 GKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFINDKNTNFLGKNNKL 587
           GKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFINDKNTNFLGKNNKL
Sbjct: 533 GKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFINDKNTNFLGKNNKL 592

Query: 588 SVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSTSNFQFLFDLGLRMNLARPKKKDSD 647
           SVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVS SNFQFLFDLGLRMNLARPKKKDSD
Sbjct: 593 SVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSASNFQFLFDLGLRMNLARPKKKDSD 652

Query: 648 HAAQHGIELGFKIPTINTNYYSFMGAKLEYRRMYSLFLNYVFAY 691
           HAAQHG+ELG KIPTINT+YYSFMGA+L+YRR+YS++LNYVFAY
Sbjct: 653 HAAQHGMELGVKIPTINTDYYSFMGAELKYRRLYSVYLNYVFAY 696