>ref|NP_223725.1| putative outer membrane protein [Helicobacter pylori J99]
          Length = 751

 Score = 1083 bits (2802), Expect = 0.0
 Identities = 566/753 (75%), Positives = 606/753 (80%), Gaps = 55/753 (7%)

Query: 1   MLRFVSKTICLSLIGLFNPLEAFQKHQKDGFFIEAGFETGLLEGTQTKEEVIT-----TQ 55
           MLR VSKTICLSLI LFNPLEAFQKHQKD FF+EAGFETGLLEG QTKE+ I      TQ
Sbjct: 1   MLRLVSKTICLSLISLFNPLEAFQKHQKDVFFVEAGFETGLLEGAQTKEQAIAQNTQNTQ 60

Query: 56  KIYENPLTHPQTKEQPKEQNKSDTATPQSAYGKYYIPQSTILKNATALFTTDKIE-NGLT 114
           KIYENPLTHPQTKEQPKEQNKSDTATPQS YG+YYI Q+TIL+ AT LFT   I  NGLT
Sbjct: 61  KIYENPLTHPQTKEQPKEQNKSDTATPQSVYGRYYILQNTILEKATELFTAANINGNGLT 120

Query: 115 FYSQNPVYANMVNGS------------VTIQNFLPYNLNNVELSFKDAQGKVVNLGVIET 162
           FYSQNPVY    N              V IQNFLPYNLNN+ELS+ DAQGK VNLGVIET
Sbjct: 121 FYSQNPVYVMAYNKDNAEFEGYGNNSVVVIQNFLPYNLNNIELSYTDAQGKAVNLGVIET 180

Query: 163 IPKQSQITLPASLFNDSEFEQADSFN---YQQLQATATQFSDANTQSLFQKLSKITTNVT 219
           IPK SQI LPASLFN+  F     FN    QQLQ T T FSDANTQSLF+KLS+ITTN+ 
Sbjct: 181 IPKDSQIILPASLFNN--FSNDSPFNSDGLQQLQTTTTPFSDANTQSLFEKLSQITTNLQ 238

Query: 220 MSYENADT----NN-----------------FKGNCHDCVSDFTPQTAEELTNLMLDMIA 258
           M+YEN D     NN                 +K +C      FTPQTAEELTNLMLDMIA
Sbjct: 239 MTYENTDPFSSGNNDPNGPLASPKPHYECPGYKKSCQVASVSFTPQTAEELTNLMLDMIA 298

Query: 259 VFDSKSWEEAVLNAPFQFSNSSSECGSDFPKCVNPFNNGRVAPIYEKYVLTPQSVIDAFR 318
           VFDSKSWEEAVLNAPFQFSNS SECG D+PKCVNPFNNG V P  EKY LTP+ VI+++R
Sbjct: 299 VFDSKSWEEAVLNAPFQFSNSPSECGIDYPKCVNPFNNGLVDPKDEKYALTPEEVINSYR 358

Query: 319 RTINLEVNILKS--GFVGLGYEL-------DD--NDGNLGIEASALNPEKLFGKTLNKVD 367
               L VN+L +  GF+GLG +L       DD  N G LGI   AL+PEKLFGK LNKV 
Sbjct: 359 VANELTVNLLNAAKGFLGLGSQLGSANAPDDDGFNQGVLGIAPFALDPEKLFGKNLNKVA 418

Query: 368 IVELRDIIHEFSHTKGYTHNGNMTYQRVRLCQENGGAIQECEGGKEELVNGKEELKFTNG 427
           I+ LRDIIHE+ HT GYTHNGNMTYQRVRLCQE  G    CEGG E   NGKEEL+F+NG
Sbjct: 419 ILALRDIIHEYGHTLGYTHNGNMTYQRVRLCQEGNGPEARCEGGHEVEKNGKEELEFSNG 478

Query: 428 KEVKDQDGYTYDVCSFYKDNHQVYTASNYPNSIYTNCAQVPAGLIGVTTAVWQQLINQNA 487
            EV+D DGYTYDVCS +   +Q    SNYPNSIYTNCAQVPAGLIGVTTAVWQQLINQNA
Sbjct: 479 HEVRDHDGYTYDVCSRFGGKNQPAFPSNYPNSIYTNCAQVPAGLIGVTTAVWQQLINQNA 538

Query: 488 LPINFANLNSPTNHLNAGLNAQNFATSIVSAIAQNFSTTSTTTYRSSSKNFRSPILGVNV 547
           LPINFANLNS T+HLNAGLNAQNFATS+VSAIAQNFSTTSTTTYRSSSKNFRSPILGVNV
Sbjct: 539 LPINFANLNSQTSHLNAGLNAQNFATSMVSAIAQNFSTTSTTTYRSSSKNFRSPILGVNV 598

Query: 548 KIGYQHYFNDYIGLAYYGIIKYNYAKTNDEKIQQLSYGGGMDVLFDFITTYANKKQDNPT 607
           KIGYQHYFNDYIGLAYYGII+YNYA+ NDEKIQQLSYGGGMDVLFDFITTY NKKQD+PT
Sbjct: 599 KIGYQHYFNDYIGLAYYGIIQYNYAQANDEKIQQLSYGGGMDVLFDFITTYTNKKQDHPT 658

Query: 608 KKVFASSFGVFGGLRGLYNSYYVFNQVKGSGNLDIVTGFNYRYKHSKYSVGISVPLIQSG 667
           KKVFASSFGVFGGLRGLYNSYYVFNQVKGSGNLDIVTGFNYRYKHSKYS+G+SVPLIQSG
Sbjct: 659 KKVFASSFGVFGGLRGLYNSYYVFNQVKGSGNLDIVTGFNYRYKHSKYSIGVSVPLIQSG 718

Query: 668 IKIASNNGIYANSVVLNEGGSHFKVFFNYGWIF 700
           IKIASNNGIYA+SVVLNEGGSHFKVFFNYGW+F
Sbjct: 719 IKIASNNGIYADSVVLNEGGSHFKVFFNYGWVF 751