>ref|NP_223133.1| TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT) [Helicobacter
           pylori J99]
          Length = 409

 Score =  376 bits (966), Expect = e-106
 Identities = 214/410 (52%), Positives = 267/410 (64%), Gaps = 46/410 (11%)

Query: 1   MSEWQTFCLKDLGKIVGGATPPTNNPKNYGNKISWITPKDLSTLQGRYIKKGSRSISRLG 60
           MSEWQTFCLKDLGKIVGGATPPTNNPKNYGNKI+WITPKDLSTLQGRYIKKGSRSISRLG
Sbjct: 1   MSEWQTFCLKDLGKIVGGATPPTNNPKNYGNKIAWITPKDLSTLQGRYIKKGSRSISRLG 60

Query: 61  FKSCSCVLLPKHAILFSSRAPIGYVAIAEKRLCTNQGFKSIIPNKKIYFEFLYYLLKYHK 120
           FKSCSCVLLPKHAILFSSRAPIGYVAIAEKRLCTNQGFKSIIPNKKIYFEFLYYLLKY+K
Sbjct: 61  FKSCSCVLLPKHAILFSSRAPIGYVAIAEKRLCTNQGFKSIIPNKKIYFEFLYYLLKYYK 120

Query: 121 NNFINMGEGTTIKGIYNIALGLFKVKIPPTYYEQQKIARTLSILDQKIENNHKINELLHT 180
           +N  N+G GTT K +    LGLF+VKIPPTYYEQQKIA TLSILDQKIENNHKINELLH 
Sbjct: 121 DNISNIGGGTTFKEVSGATLGLFQVKIPPTYYEQQKIAHTLSILDQKIENNHKINELLHK 180

Query: 181 LAYKIYEYY---FKYKPKNAKLEQI----IIENPKSNIMVKNAQKTQDKYPFFT------ 227
           +   +YE Y   F +  +N K  Q     +  + + N ++ N  K +      T      
Sbjct: 181 ILELLYEQYFVRFDFLDENNKPYQTSGGKMKFSKELNRLIPNDFKVKTLGELITWISGSQ 240

Query: 228 -----------------------SGDNILSYPKAIIDGRNCF-----LNTGGNAG-IKFY 258
                                  S +N ++Y     + + C+     ++  G AG ++F 
Sbjct: 241 PPKSCHIYEYKEGYIRFIQNRDYSSNNYVTYIPISKNNKICYQYDIMMDKYGEAGSVRFG 300

Query: 259 V-GKASYSTDTWCICANEFSDYL--YLLLSSIKNHINQSFFQGTSLKHLQKNLLKKYPIY 315
           + G  + +     +      +Y+  YL    IK +++ +    T    L +N +    + 
Sbjct: 301 LQGAYNVALSKISVLNQSMQEYIRSYLNSKPIKKYLSNACMASTRAS-LNENHIYSLMLP 359

Query: 316 MPSVHEIKKFNQIMMPLLTLISINTRTSKKLEQIRDFLLPLLLKQQVKPQ 365
           +P ++ ++K+ +I   ++T I  N ++++ L  +RDFLLPLLLKQQVKPQ
Sbjct: 360 IPPINLLQKYEKIAKNIITAIIKNNQSTQTLTALRDFLLPLLLKQQVKPQ 409