>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
           pylori J99]
          Length = 991

 Score =  134 bits (337), Expect = 1e-32
 Identities = 137/493 (27%), Positives = 224/493 (44%), Gaps = 111/493 (22%)

Query: 283 KKHVWRYAQMFASLNVLKELQKHYGTNQNLKDPLKGIIWHTQGSGKTALTYHLTKLIRDF 342
           +K   R+ Q FA     + +Q+  G          GIIWHTQGSGK+     LT+ IR  
Sbjct: 235 QKKCARFHQYFAIKKTQEFIQRKEG----------GIIWHTQGSGKSLTMVWLTRWIR-- 282

Query: 343 FSRSNLNKKTKFYFIVDRLDLLEQAKNEFLKRGLCVHEAENKEDLSQKLKSSSVFEGSQG 402
               N+ K+ +   + DR +L  Q +  F   G  ++ A++K+DL   L  +  F     
Sbjct: 283 ---RNI-KQARVLIVTDRRELDAQIQGVFQGIGEKIYRADSKKDLLSVLFENKKF----- 333

Query: 403 NDEIIVVNIQKFKAPNEEKSPNEDPSNSAPKEIISKTELQESIQNSRNLQRVFIIDEAHR 462
              ++   + KF         +++      K+ + K             + + ++DE HR
Sbjct: 334 ---LVGSLVHKF---------DDNDLEDLKKQPVLK-------------EWIVLVDECHR 368

Query: 463 SYDPKGCFYANLIECDKTAIKIALTGTPLLEDNAQDKAT-KNTFGNYLHTYSYTESIKDR 521
           +   K   +  +      AI IA +GTPLL+   QDK T +  FG+Y+H Y + E++ D+
Sbjct: 369 TQSGK--LHKAMKSLLPNAIFIAFSGTPLLK---QDKKTSQEVFGDYIHCYKFNEAVSDK 423

Query: 522 HTLKLQLE--SIE--TSYKEKLQEIYRLLQESIT-IEDTEVKK-----ETIFNDEKYINA 571
             L L  E  S+E   S  EKL E + L  +++     TE+KK     + +F+ +  +  
Sbjct: 424 VVLDLNYEARSVEQYVSSPEKLDEYFELKTQNLNEAAKTELKKKWVNLQKVFSTKDRLEH 483

Query: 572 MLYYIIRDLLDFRRLNDNE-----------------------RLK---AMVVCFSSKQAR 605
           ++  I+ D+    RL++ +                        LK   A++  +    A 
Sbjct: 484 IVQDIVLDMAKLPRLSNGKGNAMLVAESVYNACRYFELFLETELKDKVAVITSYEPNIAD 543

Query: 606 LADCLFNEVQE--------KVLQ----ENPNLRILNKLKSSLILHDEQEVKEKVHSFKHE 653
           L DC  NE +E        K+LQ    E    + LNK+K       E+EVK++   F +E
Sbjct: 544 LKDCGSNESEESYKYRAYCKMLQNFFNEKDEKKALNKIKEF-----EEEVKKR---FINE 595

Query: 654 DT--DIVFVFNMLLTGFDLPSLKRLYIHRELKDHNLLQALARVNR-SYKNMSFGYLIDFV 710
                ++ V + LLTGFD PSL  LYI + ++DH L QA+ RVNR   ++  FG +ID+ 
Sbjct: 596 PARMKLLIVVDKLLTGFDAPSLTYLYIDKRMQDHGLFQAVCRVNRLDGEDKDFGCIIDYS 655

Query: 711 GIQENFDKTTDDY 723
            + ++  +   DY
Sbjct: 656 DLFDSLQEAHSDY 668