>ref|NP_223153.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
           pylori J99]
          Length = 351

 Score =  230 bits (587), Expect = 4e-62
 Identities = 131/354 (37%), Positives = 199/354 (56%), Gaps = 10/354 (2%)

Query: 3   YKILDLFCGAGGFSAGLECLEEFDALIGLDCDKQALITFENNHKNAIGVCGDITQTEIKE 62
           YK+ D+FCGAGG S G      F+ +   D DK A+++++ NHK    +  DI Q     
Sbjct: 2   YKVADIFCGAGGLSYGFSTHPYFELIWANDIDKDAILSYQANHKETQTILCDIAQLHCHN 61

Query: 63  KVIKLAKKLEINMIIGGPPCQGFSNKGKNLGLKDPRNFLFLEYIEIVKAIKPEIFIIENV 122
                  ++ I++++GGPPCQ +S  GK     D +  LF EY+ I+  +KP+IF+ ENV
Sbjct: 62  -----LPRVPIDILLGGPPCQSYSTLGKRK--MDEKANLFKEYLRILDLVKPKIFVFENV 114

Query: 123 KNLISCAKGYFLEEIKERLNALGYQLSYQILNAKDYGVPQNRERAFIVGASR-FSFDFNL 181
             L+S  KG   + I       GY L + ILNA DYGVPQ RER  +VGA + F   F  
Sbjct: 115 VGLMSMQKGQLFQRICNAFKERGYILEHAILNALDYGVPQVRERVILVGALKSFKQKFYF 174

Query: 182 LEPSQS-VNVQDAISDLAYLCSNEGAFESDYLNPIQSSYQALMRKDSPKLYNHQATNHSQ 240
            +P ++  +++DA+ DL  + S E      YL    + +   +R +S +L  H +  +++
Sbjct: 175 PKPIKTHFSLKDALGDLPPIQSGENGDALGYLKNADNVFLEFVR-NSKELSEHSSPKNNE 233

Query: 241 AALEKLKLINKEQGKECLPKNLHGKQQFKSTWGRLNWNKISPTIDTRFDTPSNGTNSHPE 300
             ++ ++ +   Q K+ LP++L  K  + +T+ ++ W K +PTI   F TPS+    HP 
Sbjct: 234 KLIKIMQTLKDGQSKDDLPESLRPKSGYINTYAKMWWEKPAPTITRNFSTPSSSRCIHPR 293

Query: 301 LHRSITPREAARIQSFSDNYIFYGNKTSVCKQIGNAVPPLLALALGKAILKSLR 354
             R+++ RE AR+QSF DNY FYG+  +   QIGNAVPPLL+ AL  A+   LR
Sbjct: 294 DSRALSIREGARLQSFPDNYKFYGSANAKRLQIGNAVPPLLSAALAHAVFDFLR 347