>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
          Length = 1819

 Score = 2011 bits (5209), Expect = 0.0
 Identities = 1063/1409 (75%), Positives = 1174/1409 (82%), Gaps = 120/1409 (8%)

Query: 139  ETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTNFDGDKSEETQT 198
            ETSKK QQ SPQDLSNEEATEANHFE+LLKES ESSD+HLDNPTET+T+FD DK EETQT
Sbjct: 9    ETSKKAQQDSPQDLSNEEATEANHFEDLLKESTESSDNHLDNPTETKTHFDEDKLEETQT 68

Query: 199  QMDSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEEDDQENNEYQ 258
            QMDS GNETSESSNGSLADKLFKKARKLVD+K+PFTQQK+LDEETQ+LNEEDDQENNE+Q
Sbjct: 69   QMDSGGNETSESSNGSLADKLFKKARKLVDDKRPFTQQKSLDEETQKLNEEDDQENNEHQ 128

Query: 259  EETQTDLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTE----- 313
            EETQTDLIDDETS+KTQQ SPQDLSNEEATEANHFE+LLKES ESSD+HLDNPTE     
Sbjct: 129  EETQTDLIDDETSEKTQQDSPQDLSNEEATEANHFEDLLKESTESSDNHLDNPTESSDNH 188

Query: 314  -----------TQTNFDGDKSEEITDDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRS 362
                       T+T+FD DK EEITDDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRS
Sbjct: 189  LDNPTETKTQETKTHFDEDKPEEITDDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRS 248

Query: 363  IFHYFMPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRT 422
            IFHYF+PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRT
Sbjct: 249  IFHYFVPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRT 308

Query: 423  LYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAK 482
            LYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAK
Sbjct: 309  LYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAK 368

Query: 483  TEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFR 542
            TEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER ECLKLINDPEIREKFR
Sbjct: 369  TEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFR 428

Query: 543  KELELQKELQEYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNEC 602
            KELELQKELQEYKDCIKNAKTEAEKN+CLKGLSKEAIERLKQQALDCLKNAKTDEER EC
Sbjct: 429  KELELQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERKEC 488

Query: 603  LKNIPQDLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNA 662
            LKNIPQDLQKELLADMSVKAYKDCVS+ARNEKEKQECEKLLTPEA+K LE Q LDCLKNA
Sbjct: 489  LKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKQECEKLLTPEAKKLLENQALDCLKNA 548

Query: 663  KTDEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEE 722
            KTDEERK+CLK+LPKDLQSDILAKESLKAYKDC SQAKTEAEKKECEKLLTPEAKKLLEE
Sbjct: 549  KTDEERKECLKNLPKDLQSDILAKESLKAYKDCASQAKTEAEKKECEKLLTPEAKKLLEE 608

Query: 723  EAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSRARNEKEK 782
            EAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSV+AYLDCVS+A+NE E+
Sbjct: 609  EAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVRAYLDCVSKAKNEAER 668

Query: 783  KECEKLLTPEAKKLLEQQALDCLKNAKTDKERKKCLKDLPKDLQKKVLAKESVKAYLDCV 842
            KECEKLLTPEAKKLLE QALDCLKNAKTD+ERK+CLKDLPKDLQKKVLAKESV+ YLDCV
Sbjct: 669  KECEKLLTPEAKKLLENQALDCLKNAKTDEERKECLKDLPKDLQKKVLAKESVRVYLDCV 728

Query: 843  SQAKTEAEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARK 902
            S+AK EAE+KECEKLLTPEARKLLEEAKKSVKAY DCV +A+ E EK+ECEKLLTPEARK
Sbjct: 729  SKAKNEAERKECEKLLTPEARKLLEEAKKSVKAYKDCVLRARNEKEKQECEKLLTPEARK 788

Query: 903  LLEEXAKESVKAYLDCVSQAKNEAEKKECEKLLTLESKKKLEEAKKSVKAYLDCVSQAKT 962
            LLEE +K+SVKAYLDCVS+AKNEAE+KECEKLLT E++K LEEAK+SVKAY DCVS+A+ 
Sbjct: 789  LLEE-SKKSVKAYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARN 847

Query: 963  EAEKKECEKLLTPEAKKLLEQQA------LDCLKNAKTEADKKRCVKDLPKDLQKKV-LA 1015
            E EK+ECEKLLTPEA+KLLE+        LDC+  AK EA++K C K L  + +K +  A
Sbjct: 848  EKEKQECEKLLTPEARKLLEESKKSVKAYLDCVSKAKNEAERKECEKLLTPEARKLLEEA 907

Query: 1016 KESLKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEE----------------------- 1052
            KES+KAYKDCVS+ARNEKEK+ECEKLLTPEAKKLLE                        
Sbjct: 908  KESVKAYKDCVSRARNEKEKQECEKLLTPEAKKLLENQALDCLKNAKTEAEKKRCVKDLP 967

Query: 1053 --------AKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESVKAYKDCVSK 1104
                    AK+SV+ YLDCVS+AK EAE+KECEKLLTPEARKLLEEAKESVKAYKDCVS+
Sbjct: 968  KDLQKKVLAKESVRVYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSR 1027

Query: 1105 ARNEKEKKECEKLLTPEAKKLLEQQV---------------------------------- 1130
            ARNEKEK+ECEKLLTPEA+KLLEQ+V                                  
Sbjct: 1028 ARNEKEKQECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKL 1087

Query: 1131 -----LDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEK 1185
                 LDCLKNAKTEA+KKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEK
Sbjct: 1088 LENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEK 1147

Query: 1186 LLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSIKAYL 1245
            LLTPEA+KLLEE+K+S+KAY DC+S+A+NE E++ CEKLLTPEARKLLE E K+S+KAY 
Sbjct: 1148 LLTPEARKLLEESKKSVKAYLDCVSKAKNEAEKKECEKLLTPEARKLLE-EAKESVKAYK 1206

Query: 1246 DCVSRARNEKEKKECEKLLTPEARKFLAKQV-------LNCLEKAGNEEERKACLKNLPK 1298
            DCVSRARNEKEK+ECEKLLTPEARK L ++V       L+C+ +A NE+E++ C K L  
Sbjct: 1207 DCVSRARNEKEKQECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTP 1266

Query: 1299 DLQENI--LAKESLKAYKDCLSQARNEEERRA---CEKLLTPEARKLLEQEVKKSVKAYL 1353
            + ++ +    ++  KA KDCL  A +  +R A   C   L+ E +    QE ++  KA L
Sbjct: 1267 EARKFLEKQRQQKDKAIKDCLKNA-DPNDRAAIMKCLDGLSDEEKLKYLQEARE--KAVL 1323

Query: 1354 DCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAI---------KDCLKNA-DPNDR 1403
            DC+  AR ++EK++C+ L +   ++   K+ Q K   +          +CL N  DP D+
Sbjct: 1324 DCLKTARTDEEKRKCQNLYSDLIQEIQNKKAQNKQNQLSKTERLHQASECLDNLDDPTDQ 1383

Query: 1404 AAIMKCLDGLSDEEKLKYLQEAREKAVAD 1432
             AI +CL+GLSD E+   L   R+    D
Sbjct: 1384 EAIEQCLEGLSDSERALILGIKRQADEVD 1412