>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
            [Helicobacter pylori J99]
          Length = 1167

 Score = 1996 bits (5171), Expect = 0.0
 Identities = 1022/1191 (85%), Positives = 1078/1191 (89%), Gaps = 29/1191 (2%)

Query: 1    MTNETIDQTRTPDQTQSQTAFDPQQFINNLQVAFIKVDNVVASFDPDQKPIVDKNDRDNR 60
            MTNE I+Q     Q Q++ AF+PQQFINNLQVAFIKVDNVVASFDP+QKPIVDKNDRDNR
Sbjct: 1    MTNEAINQ-----QPQTEAAFNPQQFINNLQVAFIKVDNVVASFDPNQKPIVDKNDRDNR 55

Query: 61   QAFDGISQLREEYSNKAIKNPTKKNQYFSDFIDKSNDLINKDNLIDVESSTKSFQKFGDQ 120
            QAF+ ISQLREE++NKAIKNPTKKNQYFS FI KSNDLI+KDNLID  SS KSFQKFG Q
Sbjct: 56   QAFEKISQLREEFANKAIKNPTKKNQYFSSFISKSNDLIDKDNLIDTGSSIKSFQKFGTQ 115

Query: 121  RYQIFTSWVSHQKDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQ 180
            RYQIF +WVSHQ DPSKINT+ IR FMENIIQPPI DDKEKAEFL+SAKQ+FAGIIIGNQ
Sbjct: 116  RYQIFMNWVSHQNDPSKINTQKIRGFMENIIQPPISDDKEKAEFLRSAKQAFAGIIIGNQ 175

Query: 181  IRTDQKFMGVFDESLKERQEAEKNG----GPTGGDWLDIFLSFIFNKKQSSDVKEAINQE 236
            IR+DQKFMGVFDESLKERQEAEKNG     PTGGDWLDIFLSF+FNKKQSSD+KE +NQE
Sbjct: 176  IRSDQKFMGVFDESLKERQEAEKNGEPNGDPTGGDWLDIFLSFVFNKKQSSDLKETLNQE 235

Query: 237  PVPHVQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQ 296
            PVPHVQPD+ATTTTDIQ LPPEARDLLDERGNFSKFTLGDM MLDVEGVADIDPNYKFNQ
Sbjct: 236  PVPHVQPDVATTTTDIQSLPPEARDLLDERGNFSKFTLGDMNMLDVEGVADIDPNYKFNQ 295

Query: 297  LLIHNNALSSVLMGSHNGIEPEKVSLLYAGNGGFGDKHDWNATVGYKDQQGNNVATLINV 356
            LLIHNNALSSVLMGSHNGIEPEKVSLLY  NGG   +HDWNATVGYK+Q+G+NVATLINV
Sbjct: 296  LLIHNNALSSVLMGSHNGIEPEKVSLLYGNNGGPEARHDWNATVGYKNQRGDNVATLINV 355

Query: 357  HMKNGSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIRNKVDFMEFLAQNNTKLD 416
            HMKNGSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEI+NKVDFMEFLAQNN KLD
Sbjct: 356  HMKNGSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKVDFMEFLAQNNAKLD 415

Query: 417  NLSEKEKEKFQNEIEDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFNNGDLSYTLK 476
            NLS+KEKEKFQNEIEDFQKDSKAYLDALGND IAFVSKKD KH AL+ EF NG+LSYTLK
Sbjct: 416  NLSKKEKEKFQNEIEDFQKDSKAYLDALGNDHIAFVSKKDKKHLALVAEFGNGELSYTLK 475

Query: 477  DYGKKADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGATNGVSHLEAG 536
            DYGKKADKALDRE   TLQGSLKHDGVMFVDYSNFKYTNASK+P+KGVGATNGVSHLEAG
Sbjct: 476  DYGKKADKALDREAKTTLQGSLKHDGVMFVDYSNFKYTNASKSPDKGVGATNGVSHLEAG 535

Query: 537  FNKVAVFNLPDLNNLAITSFVRRNLENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNF 596
            F+KVAVFNLP+LNNLAITS VR++LE+KL AKGLS QEANKL+KDFLSSNKEL GKALNF
Sbjct: 536  FSKVAVFNLPNLNNLAITSVVRQDLEDKLIAKGLSPQEANKLVKDFLSSNKELVGKALNF 595

Query: 597  NKAVAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQ 656
            NKAVAEAK+TGNYDEVK+AQKDLEKSL+KRE LEK+V K LESKSGNKNKMEAK+QANSQ
Sbjct: 596  NKAVAEAKNTGNYDEVKQAQKDLEKSLKKRERLEKDVAKNLESKSGNKNKMEAKSQANSQ 655

Query: 657  KDEIFALINKEANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKD 716
            KDEIFALINKEANRDARAIAY QNLKGIKRELSDKLE I+KDLKDFSKSFDEFKNGKNKD
Sbjct: 656  KDEIFALINKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKD 715

Query: 717  FSKAEETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSV 776
            FSKAEETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENS+
Sbjct: 716  FSKAEETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSI 775

Query: 777  KDVIINQKVTDKVDNLNQAVSVAKAMGDFSRVEQVLADLKNFSKEQLAQQAQKNEDFNTG 836
            KDVIINQK+TDKVDNLNQAVSVAKA GDFS VEQ LADLKNFSKEQLAQQAQKNEDFNTG
Sbjct: 776  KDVIINQKITDKVDNLNQAVSVAKATGDFSGVEQALADLKNFSKEQLAQQAQKNEDFNTG 835

Query: 837  KNSELYQSVKNSVNKTLVGNGLSGIEATALAKNFSDIKKELNEKFKNF-NNNNNGLKNST 895
            KNS LYQSVKN VN TLVGNGLS  EAT L+KNFSDIKKELN K  NF NNNNNGL+NST
Sbjct: 836  KNSALYQSVKNGVNGTLVGNGLSKAEATTLSKNFSDIKKELNAKLGNFNNNNNNGLENST 895

Query: 896  EPIYAKVNKKKTGQVASPEEPIYTQVAKKVNAKIDRLNQIASGLGGVGQAAGFPLKRHDK 955
            E                   PIYTQVAKKV AKIDRL+QIASGLG VGQAA F LKRHDK
Sbjct: 896  E-------------------PIYTQVAKKVKAKIDRLDQIASGLGDVGQAASFLLKRHDK 936

Query: 956  VDDLSKVGLSASPEPIYATIDDLGGPFPLKRHDKVDDLSKVGRSRNQELAQKIDNLNQAV 1015
            VDDLSKVGLSA+ EPIYATIDDLGGPFPLKRHDKVDDLSKVG SR Q+L QKIDNLNQAV
Sbjct: 937  VDDLSKVGLSANHEPIYATIDDLGGPFPLKRHDKVDDLSKVGLSREQKLTQKIDNLNQAV 996

Query: 1016 SEAKAGFFGNLEQTIDKLKDSTKKNVMNLYVESAKKVPASLSAKLDNYAINSHTRINSNI 1075
            SEAKA  F NL+Q IDKLKDSTKKNV+NLYVESAKKVP SLSAKLDNYA NSHTRINSN+
Sbjct: 997  SEAKASHFDNLDQMIDKLKDSTKKNVVNLYVESAKKVPTSLSAKLDNYATNSHTRINSNV 1056

Query: 1076 QNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVSLSEYDKIGFNQKNMKDYSDSFKF 1135
            +NG INEKATGMLTQKN EWLKLVNDKIVAHNVGS  LS YDKIGFNQKNMKDYSDSFKF
Sbjct: 1057 KNGTINEKATGMLTQKNSEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKF 1116

Query: 1136 STKLNNAVKDIKSGFTHFLANAFSTGYYCLARENAEHGIKNVNTKGGFQKS 1186
            ST+L+NAVKDIKSGF  FL N FS G Y L + + EHG+KN NTKGGFQKS
Sbjct: 1117 STRLSNAVKDIKSGFVQFLTNIFSMGSYSLMKASVEHGVKNTNTKGGFQKS 1167