>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
           pylori J99]
          Length = 641

 Score =  308 bits (790), Expect = 2e-85
 Identities = 228/590 (38%), Positives = 304/590 (50%), Gaps = 71/590 (12%)

Query: 20  IKMLLG-FNESMNDISGYELTWTGKGFANALYSEPCQKQLKLQESFTPQTSASKHPNNAI 78
           +K LLG F+E   +  GY L + GK  A    ++  +K  K+ +     TS  KH    +
Sbjct: 43  LKALLGDFSEIKEE--GYGLDFVGKKIA---LNQAFKKNHKILKPLNESTS--KH---IL 92

Query: 79  IIGDNLDALKLLKSAYSEKIKMIYIDPPYNTGNDEFIYPDNFRQDYQKILREVGLMEIDE 138
           I GDNLDALK+LK +YSEKIKMIYIDPPYNT ND FIY D+F Q  +++L+ +       
Sbjct: 93  IKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYGDDFSQSNEEVLKTL------- 145

Query: 139 NGKEIESESLKFFKNTQGSGTHSGWLSFMLPRLKLARDLLKEDGVIFISIDDNECANLKI 198
              +   E L + KN  GS  HSGWLSFM PRL LA+DLLK+DGVIFISIDDNECA LK+
Sbjct: 146 ---DYSKEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNECAQLKL 202

Query: 199 LCDEIFGEDNFVGDFIRKTKSTTNDAKIGLNYQHEFLLCYAKDKNYTNLL-----GGEKN 253
           LCDEIFGE NF+  F+     T   A       HEF+LCY K+K+   ++     GG+  
Sbjct: 203 LCDEIFGEGNFIETFLWNKTQTPPSASNKTRKTHEFILCYQKNKDNKKMIAKFSDGGDAP 262

Query: 254 LENYKNPDN----DPNGAWIN-DNPSAKSG-NMKTGYFGVTNPYTNKV--DYPPVGMFWR 305
           L N  N +       N  + N  N   K G   K         Y  K+   +   G F R
Sbjct: 263 LWNETNSERILTFPANYVFSNLKNGIYKKGIRDKIEVLDDIEVYNGKIINSFRLKGHF-R 321

Query: 306 FSQNTIQKHIDEGRICFKKEHKDNERGFIYKRYLKDLKTTQKTFDSLIFSDNCYMNQAAT 365
           + Q T+ + I        K  K         RY ++ +      + +   DN   N+ A+
Sbjct: 322 WKQETLNEEIINNVFLVVKSDK------FSIRYCREGERIVMPTNEISKKDNVGTNETAS 375

Query: 366 KELLNL-GMGEYFTYPKGVEFMKKII-LHSTTPNEGDIILDFFAGSGTTVHAVMELNAED 423
           KEL  L    + F + K V  +K +I + S   NEGDIILDFFAGSGTT HAV+E N  D
Sbjct: 376 KELFKLFDNNKIFNFNKPVSLIKYLISICSNNTNEGDIILDFFAGSGTTAHAVLESNKSD 435

Query: 424 K-----------------GNREFILVQIDEEIKEDESAYDFCKKELKSAKPVISDITIER 466
                               R FILVQ+DE+I++++SAYDFC   LKS  P I DIT ER
Sbjct: 436 YQKLSEGGGLFNGLNAVFKERRFILVQLDEKIEKNKSAYDFCLNTLKSTSPSIFDITEER 495

Query: 467 VKRAAQKISQLSKDSGLDLGFKVYTLQDKVQIINDK-------EEITLFNRSDLTPFDKA 519
           +KRA  KI +    + LD+GF+ + + D     NDK       +++  ++  D       
Sbjct: 496 IKRAGAKIKEAC--AHLDVGFRAFEIIDDETHTNDKNLGEAHQKDLFAYSNLDRMETQTI 553

Query: 520 LNLALQC-GKTLNQALEIIIKDKLYKCEDAYFCIVCDEEAQEYLAKSKNE 568
           L   L C G  L   +  +I++ LY   +  F IV D E  E L   K++
Sbjct: 554 LIKLLGCEGLELTTPIICLIENALYLALNTAF-IVGDIEMSEVLENLKDK 602