>ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT)
           [Helicobacter pylori J99]
          Length = 454

 Score =  285 bits (729), Expect = 2e-78
 Identities = 200/456 (43%), Positives = 261/456 (56%), Gaps = 42/456 (9%)

Query: 1   MHKIERLLQTLAPKGVEFKTLEEVFEIKNGYTPSKNNPEFWKNGT--IPWFRMEDIRENG 58
           M+KIE LL TLAPKGVEF+ L ++ E   G    K+   F +     +P+    ++  N 
Sbjct: 1   MNKIELLLHTLAPKGVEFRKLGDIGEFYGGLV-GKSKKSFSQGNKFYVPYI---NVFNNP 56

Query: 59  RILKDSIQHITPKALKGKKLFPKNSIIIS-TKATIGEHALLIVDSLANQQFTFLSKKANC 117
           ++  ++++ +     + +       ++ + +   + + A+  V +   ++  +L+     
Sbjct: 57  QLDLNALESVQIGDKEKQNTIQLGDVLFTGSSENLEDCAMSCVVTQKIEEDIYLNSFCFG 116

Query: 118 DLALDMKFF---FYQCFLLGEWCKNNIN-----VSGFASVDMTAFKKYKFPIPPLEIQQE 169
               D   F   F + FL     + NI+     V+ F +V      K   PIPPLEIQQE
Sbjct: 117 FRFFDKNLFNPSFLKHFLRDYNFRKNISKVANGVTRF-NVSKQLLLKITIPIPPLEIQQE 175

Query: 170 IVKILDAFTELNTELNTELNTELKARKKQYEYYQNMLLDFNDINQSHKDAKERLAQKTYP 229
           IV ILDAFTELNTELNTELNTEL ARKKQY+YYQNMLLDFNDINQS KDAKERLAQK YP
Sbjct: 176 IVTILDAFTELNTELNTELNTELNARKKQYQYYQNMLLDFNDINQSRKDAKERLAQKPYP 235

Query: 230 KRLKTLLQTLAPKGVEFRKLGEVCEILDNRRI--PIAKNKRNPGIYPYYGANGIQ----- 282
           KRLK LL TLAPKGVEFRKLG++ E      +     ++K  P +  +YG    Q     
Sbjct: 236 KRLKQLLHTLAPKGVEFRKLGDIGEFTRGNGLLKSDLQDKGRPVV--HYGQIHTQYNLSI 293

Query: 283 DYIDSYIFDGDF----------VLVGEDGSVINKDNTPVVNWASGKIWVNNHAHVLQTKN 332
           D   SY+ D  F          +L+      + KD    + W   +    +      + N
Sbjct: 294 DKTISYVNDALFHKLKKAKPNDILIATTSENV-KDVGKSIAWLGNEEVAFSGEMYSYSTN 352

Query: 333 ELKLKFLYFYLQTI----DVSYCVAGTP-PKINQENLKKIAIPIPPLEIQQEIVKILDQF 387
           E   KF+ +Y QT     +    + GT   +I++ +LK+I IPIPPLEIQQEIV ILDQF
Sbjct: 353 E-NPKFIIYYFQTYFFQKEKEKKITGTKVMRIHENDLKQITIPIPPLEIQQEIVTILDQF 411

Query: 388 SILTTDLLAGIPAEIKARKKQYEYYREKLLTFKPLT 423
           S LTTDL AGIPAEIKARKKQYEYYREKLLTFKPLT
Sbjct: 412 SALTTDLQAGIPAEIKARKKQYEYYREKLLTFKPLT 447