>ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99]
          Length = 442

 Score =  129 bits (323), Expect = 2e-31
 Identities = 118/450 (26%), Positives = 193/450 (42%), Gaps = 78/450 (17%)

Query: 6   KFRIYPNAQQKELISKHFGCSRVVYNYFLDYRQKQYAKGI----KETYFTMQKVLTQIKR 61
           KFR+YP  +Q++ +   F      YN  L+  Q+QY K      KE     +K  +++ +
Sbjct: 8   KFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYEKNKDLPPKER---TRKKSSELDK 64

Query: 62  QEKYHYLNECNSQSLQMALRQLVSAY----DNFFSKRARYPKFKSKKNAKQSFAIPQN-- 115
             K+H      S S  +A +  ++      D F  K   +PKFK+ K+AKQSF+      
Sbjct: 65  AIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKNRGFPKFKNSKSAKQSFSWNNQGF 124

Query: 116 -IETKTETQTIALPKFKEGIKAKLHRDLPKDSVIKQAFISCIADQYFCSLSYETKEPIPK 174
            I+   E +       K  +   +HRD P  S +KQ  ISC   +YF S S E ++ I  
Sbjct: 125 FIKESDEERFKIFTLMKMPLMMCMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQDITP 184

Query: 175 PTIIKKAVGLDMGLRTLIVT-------------------SDKIG---------------Y 200
               K  VGLD+ +  +  +                    + +G               Y
Sbjct: 185 IKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKRYSTDMKELLGIEIDEELDTKRLIPTY 244

Query: 201 PHIRFYQKLEKKLTKAQRRLSKKVKDSNNRK--------KQAKKVSRLHLACSNTRDDYL 252
             +   +K  KK  + QR+ S++V  S   K        K  KK++++    S+ + D  
Sbjct: 245 SKLYSLKKHSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQVFDKSSHQKTDRY 304

Query: 253 HKISNEITNQYDLIGVETLNVKALMRTYHSK----------SLANASWGKFLTMLEYKAQ 302
           HKI++E++ Q++LI VE L VK + +    K          S+ N S+ + ++ L+YK Q
Sbjct: 305 HKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLDYKQQ 364

Query: 303 RKGKTLLSIDRFFPSSQLCSYCGVNTGKKHESITKFTCPHCKTTHHRDYNASVNIRNYAL 362
             GK L+ +   + +S+ C  CG    K   +  ++ C  C    HRD NA+ NI +  L
Sbjct: 365 HNGKLLVKVPPQY-TSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGL 423

Query: 363 GMLDDRHKVKTDKARVGIIRSDYTHHTNEC 392
            +             VG I +D+   +  C
Sbjct: 424 SLFG-----------VGNIHADFKEQSLSC 442