BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644635|ref|NP_206803.1| hypothetical protein
[Helicobacter pylori 26695]
(138 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222723.1| TRANSCRIPTION TERMINATION [Helicobacter py... 267 7e-74
ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99] 25 0.79
ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Heli... 24 1.3
ref|NP_223782.1| ATP synthase B' [Helicobacter pylori J99] 24 1.3
ref|NP_224110.1| putative [Helicobacter pylori J99] 24 1.8
ref|NP_223924.1| putative [Helicobacter pylori J99] 24 1.8
ref|NP_223645.1| putative [Helicobacter pylori J99] 24 1.8
ref|NP_224165.1| NA(+)/H(+) ANTIPORTER 1 [Helicobacter pylo... 23 3.9
ref|NP_223438.1| putative [Helicobacter pylori J99] 23 3.9
ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 22 5.1
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 22 5.1
ref|NP_223124.1| PROTEASE DO [Helicobacter pylori J99] 22 5.1
ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE ... 22 6.7
ref|NP_223065.1| putative [Helicobacter pylori J99] 22 6.7
ref|NP_222737.1| DNA transfer protein [Helicobacter pylori ... 22 6.7
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 22 8.7
ref|NP_223240.1| putative [Helicobacter pylori J99] 22 8.7
ref|NP_223158.1| putative [Helicobacter pylori J99] 22 8.7
>ref|NP_222723.1| TRANSCRIPTION TERMINATION [Helicobacter pylori J99]
Length = 138
Score = 267 bits (683), Expect = 7e-74
Identities = 136/137 (99%), Positives = 136/137 (99%)
Query: 1 MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQLAFALSLFNGVLEKINEI 60
MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQLAFALSLFNGVLEKINEI
Sbjct: 1 MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQLAFALSLFNGVLEKINEI 60
Query: 61 DALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGKLYAEPNTPKF 120
DALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGKLYAEPNTPKF
Sbjct: 61 DALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGKLYAEPNTPKF 120
Query: 121 LNAILDSLSKKLTQKPL 137
LNAILDSLSKKL QKPL
Sbjct: 121 LNAILDSLSKKLAQKPL 137
>ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99]
Length = 736
Score = 25.0 bits (53), Expect = 0.79
Identities = 23/76 (30%), Positives = 32/76 (41%), Gaps = 5/76 (6%)
Query: 60 IDALIEPHLKDWDFKRLGSMEKA---ILRLGAYEIGFTPTQNPIIINECIELGKLYAEPN 116
+DAL EPHL+ G+ KA I A EI + II+ I+ K P
Sbjct: 193 LDALFEPHLEAQLISYKGNKLKAQELIDEKKAQEIKNELEKESYIISSIIKKSK--KSPT 250
Query: 117 TPKFLNAILDSLSKKL 132
P F+ + L + L
Sbjct: 251 PPPFMTSTLQQSASSL 266
>ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
Length = 1001
Score = 24.3 bits (51), Expect = 1.3
Identities = 11/30 (36%), Positives = 16/30 (52%)
Query: 41 NQLAFALSLFNGVLEKINEIDALIEPHLKD 70
N A+ LS F+ E I E+D + LK+
Sbjct: 153 NSKAYRLSFFDAECESIKELDPATQMSLKE 182
>ref|NP_223782.1| ATP synthase B' [Helicobacter pylori J99]
Length = 144
Score = 24.3 bits (51), Expect = 1.3
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 22 NEEIKKIASSMLEEKKIKNNQLAFALSLFNGVLEK 56
N+E + A + EK+I QL +++F L K
Sbjct: 102 NQEFEAFAKQLQNEKQILKEQLQAQMTVFEDELNK 136
>ref|NP_224110.1| putative [Helicobacter pylori J99]
Length = 306
Score = 23.9 bits (50), Expect = 1.8
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 15 LYAFESGNEEIKKIASSMLEEKKIKNN---------QLAFALSLFNGVLEKINEIDALIE 65
+Y F++G E+ I S+ L + ++NN + S N + I D+L
Sbjct: 107 IYMFDNGKEKTSIIGSANLTKGGLENNFEVNTIFTEKEPLYYSQLNAIYNSIKYADSLFT 166
Query: 66 PH 67
P+
Sbjct: 167 PN 168
>ref|NP_223924.1| putative [Helicobacter pylori J99]
Length = 182
Score = 23.9 bits (50), Expect = 1.8
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 47 LSLFNGV--LEKINEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIG 92
LS+F G L+ +N D + HLK DF + K ++ YE G
Sbjct: 61 LSVFEGNIDLKSVNTRDRKRDNHLKTADFFDVVKYPKGSFKMTKYEDG 108
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 23.9 bits (50), Expect = 1.8
Identities = 23/120 (19%), Positives = 48/120 (39%), Gaps = 20/120 (16%)
Query: 16 YAFESGNEEIKKIASSMLEEKKIKNNQLAFALSLFNGVLEKINEIDALIEPHLKDWDFKR 75
Y + G++ S++ E+ KI++ A+ + + N L ++ I +PH
Sbjct: 1187 YEKQYGDKMTDYQLSNLKEDIKIEHLSGAYEVFVRNNELNELYGIRHKDKPH-------- 1238
Query: 76 LGSMEKAILRLGAYEIGFTPTQNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKLTQK 135
+Y++ F N ++ N+ + + +PN PK I D L ++
Sbjct: 1239 ------------SYKVPFESLLNKVLNNKDLSVKYAQVDPNDPKKEIFITDEEQSNLARQ 1286
>ref|NP_224165.1| NA(+)/H(+) ANTIPORTER 1 [Helicobacter pylori J99]
Length = 438
Score = 22.7 bits (47), Expect = 3.9
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 104 ECIELGKLYAEPNTPKFL----NAILDSLSKKLT--QKPL 137
E +ELGK YAE ++ L IL S+ +K + Q PL
Sbjct: 257 ELLELGKRYAETSSGVLLTKEQQEILHSIEEKASALQSPL 296
>ref|NP_223438.1| putative [Helicobacter pylori J99]
Length = 175
Score = 22.7 bits (47), Expect = 3.9
Identities = 13/41 (31%), Positives = 19/41 (45%)
Query: 30 SSMLEEKKIKNNQLAFALSLFNGVLEKINEIDALIEPHLKD 70
S L EK + + L N + EKI + ++EP KD
Sbjct: 47 SDKLLEKAVDRGRNTDHLKDLNDLHEKIKHLRLILEPKPKD 87
>ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 1035
Score = 22.3 bits (46), Expect = 5.1
Identities = 8/24 (33%), Positives = 18/24 (74%)
Query: 10 AVVELLYAFESGNEEIKKIASSML 33
+++ ++Y+ +G+E +K IA+ ML
Sbjct: 981 SLIPIMYSHGTGSEIMKSIAAPML 1004
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 22.3 bits (46), Expect = 5.1
Identities = 12/45 (26%), Positives = 24/45 (52%)
Query: 17 AFESGNEEIKKIASSMLEEKKIKNNQLAFALSLFNGVLEKINEID 61
AFE ++ ++ A+ ++ KN + +S N +++K N ID
Sbjct: 57 AFEKISQLREEFANKAIKNPTKKNQYFSSFISKSNDLIDKDNLID 101
>ref|NP_223124.1| PROTEASE DO [Helicobacter pylori J99]
Length = 476
Score = 22.3 bits (46), Expect = 5.1
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 13 ELLYAFESGNEEIKKIASSMLEEKKIKNN 41
+ +Y++ ++ K ++ EKKIKNN
Sbjct: 40 DTIYSYHDSIKDSIKAVVNISTEKKIKNN 68
>ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE [Helicobacter pylori J99]
Length = 688
Score = 21.9 bits (45), Expect = 6.7
Identities = 22/70 (31%), Positives = 33/70 (46%), Gaps = 15/70 (21%)
Query: 46 ALSLF-NGVLEKINEID---------ALIEPHLKDWDFKRLGSMEKAILRLGA-YEIGFT 94
+L LF +G E +N I+ AL EP + + L +K++ A YE FT
Sbjct: 170 SLDLFVSGTKESLNMIEMRSLGQKLNALEEPLM----LEALELAQKSLKETCALYEEAFT 225
Query: 95 PTQNPIIINE 104
P QN ++ E
Sbjct: 226 PYQNELLFKE 235
>ref|NP_223065.1| putative [Helicobacter pylori J99]
Length = 381
Score = 21.9 bits (45), Expect = 6.7
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 22 NEEIKKIASSMLEEKKIKNNQLAFALSLFNG 52
N+E +I ++ EK + F L +NG
Sbjct: 316 NQEFIEILDQVIREKDFAHQTKLFCLEQYNG 346
>ref|NP_222737.1| DNA transfer protein [Helicobacter pylori J99]
Length = 787
Score = 21.9 bits (45), Expect = 6.7
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 15 LYAFESGNEEIKKIASSMLEEKKIKNNQLAFALSLFNGVLEKINEIDALIEPHLKDWDFK 74
LYA + + + +S+M++ + L L +FN +N++ AL + + +W K
Sbjct: 727 LYARQVLVKNLGNGSSNMID---VSLEGLGCYLKIFNSDSSHVNKVKALQKDYPTEWREK 783
Query: 75 RLGS 78
L S
Sbjct: 784 LLKS 787
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 21.6 bits (44), Expect = 8.7
Identities = 17/63 (26%), Positives = 27/63 (41%), Gaps = 5/63 (7%)
Query: 17 AFESGNEEIKKIASSMLEEKKIKNNQLAF-----ALSLFNGVLEKINEIDALIEPHLKDW 71
AF + N+ + + L E +K L AL +F + I + +P LK+
Sbjct: 870 AFITSNKYARAKYGAKLREWLLKKTTLVSYMELNALKVFESAAVDTSIIHFIKQPPLKES 929
Query: 72 DFK 74
DFK
Sbjct: 930 DFK 932
>ref|NP_223240.1| putative [Helicobacter pylori J99]
Length = 232
Score = 21.6 bits (44), Expect = 8.7
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 62 ALIEPHLKDWDFKRLGSMEKAILRLGAYEI 91
A++ + W F+RLG +I L Y++
Sbjct: 116 AVLLAFITHWSFQRLGINALSINELNLYQL 145
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 21.6 bits (44), Expect = 8.7
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 33 LEEKKIKNNQLAFALSLFNGVLEKINEIDA 62
++ K NN L L NGV + EI A
Sbjct: 1 MKNAKFSNNTLKIIEELTNGVKQASEEIKA 30
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.135 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,582
Number of Sequences: 1491
Number of extensions: 6935
Number of successful extensions: 40
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 19
length of query: 138
length of database: 494,079
effective HSP length: 69
effective length of query: 69
effective length of database: 391,200
effective search space: 26992800
effective search space used: 26992800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 44 (21.6 bits)