BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645629|ref|NP_207805.1| hypothetical protein
[Helicobacter pylori 26695]
(168 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223127.1| putative [Helicobacter pylori J99] 308 4e-86
ref|NP_223997.1| DNA transfer protein [Helicobacter pylori ... 33 0.003
ref|NP_223827.1| putative [Helicobacter pylori J99] 29 0.076
ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 27 0.38
ref|NP_223654.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_222985.1| LIPOPOLYSACCHARIDE HEPTOSYLTRANSFERASE-1 [... 25 1.4
ref|NP_223260.1| putative [Helicobacter pylori J99] 24 1.9
ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 ... 24 1.9
ref|NP_223141.1| GLUTATHIONE-REGULATED POTASSIUM-EFFLUX SYS... 24 1.9
ref|NP_223910.1| NADH oxidoreductase I [Helicobacter pylori... 24 2.5
ref|NP_222755.1| putative [Helicobacter pylori J99] 23 3.2
ref|NP_223873.1| putative [Helicobacter pylori J99] 23 4.2
ref|NP_223812.1| putative [Helicobacter pylori J99] 23 5.5
ref|NP_223125.1| amino acid permease [Helicobacter pylori J99] 23 5.5
ref|NP_222778.1| putative [Helicobacter pylori J99] 23 5.5
ref|NP_223435.1| putative [Helicobacter pylori J99] 22 7.2
ref|NP_222934.1| putative [Helicobacter pylori J99] 22 7.2
ref|NP_222889.1| APOLIPOPROTEIN N-ACYLTRANSFERASE [Helicoba... 22 7.2
ref|NP_222736.1| putative [Helicobacter pylori J99] 22 7.2
ref|NP_224206.1| putative UNDECAPRENYL-PHOSPHATE-ALPHA-N-AC... 22 9.3
ref|NP_224167.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobac... 22 9.3
ref|NP_223716.1| putative ZINC-METALLO PROTEASE [Helicobact... 22 9.3
ref|NP_222955.1| putative [Helicobacter pylori J99] 22 9.3
>ref|NP_223127.1| putative [Helicobacter pylori J99]
Length = 202
Score = 308 bits (790), Expect = 4e-86
Identities = 158/168 (94%), Positives = 165/168 (98%)
Query: 1 MLFIVSSGAKSFQISNLFNNQLAYIVLLSLFLCALGFIAGAIGFYRLSKITRHLSFFENF 60
+LF+VSSGAKSFQISNLFNNQLAYIVLLSLFLCA+GFIAGA+GFYRLSKITRHLSFFENF
Sbjct: 35 VLFLVSSGAKSFQISNLFNNQLAYIVLLSLFLCAIGFIAGAVGFYRLSKITRHLSFFENF 94
Query: 61 AFSFLAVILCAILSYLVPNASNALSLIGNGVSIFYLHKLYRELSLYTQERFFLSGFRLLL 120
AFSFLAVILCA+LSYLVPNASNALSLIGNGVSIFYLHKLYRELSLYTQERFFLSGFRLLL
Sbjct: 95 AFSFLAVILCALLSYLVPNASNALSLIGNGVSIFYLHKLYRELSLYTQERFFLSGFRLLL 154
Query: 121 FSFMLALLGILVQALVIIFLTTAVVLMCVALGFLARAFLNFSQVFLKA 168
FSFMLALLG+LVQALVIIFLT AV+LMCVAL FL RAFLNFSQVFLKA
Sbjct: 155 FSFMLALLGVLVQALVIIFLTIAVILMCVALSFLGRAFLNFSQVFLKA 202
>ref|NP_223997.1| DNA transfer protein [Helicobacter pylori J99]
Length = 409
Score = 33.5 bits (75), Expect = 0.003
Identities = 37/150 (24%), Positives = 66/150 (43%), Gaps = 13/150 (8%)
Query: 22 LAYIVLLSLFLCAL--GFIAGAIGFYRLSKITRHLSFFENFAFSFLAVILCAILSYLVPN 79
L Y++LL FL + F+ G +GF R LSF L V+ C I L+P
Sbjct: 197 LGYLLLLD-FLPSFFRAFLMGLLGFLACFFGVRILSFK-------LLVLACCIAIALLPK 248
Query: 80 ASNALSLIGNGVSIFYLHKLYRELSLYTQE-RFFLSGFRLLLFSFMLALLGILVQALVII 138
++ + + ++Y+ + ++ ++ FF F+ + S +L L +L+ A
Sbjct: 249 LLFSVGFLLSVCGVWYIFLFLKHTQIFFKDSSFFKRSFQAIALS-VLVFLNMLIVAHAFF 307
Query: 139 FLTTAVVLMCVALGFLARAFLNFSQVFLKA 168
+ + L + LG + F S +FL A
Sbjct: 308 PMFSPYQLFSIPLGLIFIVFFPLS-LFLHA 336
>ref|NP_223827.1| putative [Helicobacter pylori J99]
Length = 459
Score = 28.9 bits (63), Expect = 0.076
Identities = 23/128 (17%), Positives = 49/128 (37%), Gaps = 15/128 (11%)
Query: 39 AGAIGFYRLSKITRHLSFFENFAFSFLAVILCAILSYLVPNASNALSLIGNGVSIFYLHK 98
A +G++ T + F F+A+ + L+P + N G+ ++ + K
Sbjct: 76 ASIVGYFLGQNKTHRARLVFSSVFYFVALSAFILSMALLPFSENIARFFGSNDALLSMSK 135
Query: 99 LYRELSLYTQERFFLSGFRLLLFSFMLALLGILVQALVIIFLTTAVVLMCVALGFLARAF 158
Y E ++L + +L L V+ + ++ + +G LA F
Sbjct: 136 RYIE---------------IILMGSVFMVLHPLADVFVVNDKRPVLAMVAMLIGSLANIF 180
Query: 159 LNFSQVFL 166
N+ +F+
Sbjct: 181 FNYLFIFV 188
>ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 936
Score = 26.6 bits (57), Expect = 0.38
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 31/161 (19%)
Query: 1 MLFIVSSGAKSFQISNLFNNQLAYIVLLSLFLCALGFIAGAIGFYRLSKITRHLSFFENF 60
+LFIV S + + N L I+ +++ LCA+ G I + +S + + +E+
Sbjct: 645 LLFIVV--ITSLVKNTIPNIWLTKILYMAILLCAIAHSVGLILRWYVSGHSPWSNAYESM 702
Query: 61 AFSFLAVILCAIL--SYLVPNASNALSLIGNGVSIFYLHKLYRELSLYTQERFFLSGFRL 118
+ A ++ + S L +AS+ L+ G+++F H
Sbjct: 703 LYIAWASVIAGFVLRSKLALSASSFLA----GIALFVAH--------------------- 737
Query: 119 LLFSFMLALLGILVQALVIIFLTTAVVLMCVALGFLARAFL 159
FM +G LV L +L V ++ + GFL F+
Sbjct: 738 --LGFMDPQIGPLVPVLKSYWLNIHVSVITASYGFLGLCFV 776
>ref|NP_223654.1| putative [Helicobacter pylori J99]
Length = 421
Score = 25.0 bits (53), Expect = 1.1
Identities = 14/38 (36%), Positives = 21/38 (54%), Gaps = 3/38 (7%)
Query: 120 LFSFMLALLGILV---QALVIIFLTTAVVLMCVALGFL 154
+ F L +LG L+ L+I+ L TA + M ALG +
Sbjct: 163 IIMFFLVILGELLFLGLLLIIVLLVTAEIFMWSALGLI 200
>ref|NP_222985.1| LIPOPOLYSACCHARIDE HEPTOSYLTRANSFERASE-1 [Helicobacter pylori J99]
Length = 336
Score = 24.6 bits (52), Expect = 1.4
Identities = 18/55 (32%), Positives = 26/55 (46%), Gaps = 2/55 (3%)
Query: 74 SYLVPNASNALSLIGNGVSIFYLHKLYRELSLYTQERFFLSGFRLLLFSFMLALL 128
SY NAL+L GN I ++ + + Y ERF L+L +F + LL
Sbjct: 167 SYQPSPKINALNLNGNKPKILFVLETSKINKTYPTERF--KELALMLENFQICLL 219
>ref|NP_223260.1| putative [Helicobacter pylori J99]
Length = 490
Score = 24.3 bits (51), Expect = 1.9
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 45 YRLSKITRHLSFFENFAFSFLAVILCAILSYLVPNA 80
+ L+ + H F+ F F F V L A+L + PNA
Sbjct: 99 FALAILGLHTQFWALFVF-FSVVALLAVLLFFAPNA 133
>ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 homolog) [Helicobacter
pylori J99]
Length = 983
Score = 24.3 bits (51), Expect = 1.9
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 109 ERFFLSGFRLLLFSFMLALLGILVQALVIIFLTTAVVLMCVALGF 153
E F S +L + +L++ IL QA + L A+V++ VALGF
Sbjct: 58 ETFIYSSIFILFVTIVLSV--ILFQAYEPV-LIVAIVIVLVALGF 99
>ref|NP_223141.1| GLUTATHIONE-REGULATED POTASSIUM-EFFLUX SYSTEM PROTEIN [Helicobacter
pylori J99]
Length = 416
Score = 24.3 bits (51), Expect = 1.9
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 15/83 (18%)
Query: 16 NLFNNQLAYIVLLSLFLCALGFIAGAIGFYRLSKITRHLSFFENFAFSFLAVILCAI--- 72
NL ++ + ++ +F+ + F F +L I + E F L V+LCA+
Sbjct: 51 NLLSDIGEFGIVFLMFMIGIEF-----NFDKLKSIKQ-----EVLVFGLLQVVLCALIAF 100
Query: 73 -LSYLVPNASNALSLI-GNGVSI 93
L Y V S SL+ G G+S+
Sbjct: 101 LLGYFVLGLSPIFSLVLGMGLSL 123
>ref|NP_223910.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 612
Score = 23.9 bits (50), Expect = 2.5
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 56 FFENFAFSFLAVILCAILSYLVPNA-SNALSLIGNGVSIFYLHKLYRELSLYTQERFFLS 114
FFE F F++ ++ ++ YLVP A +++ I +SI Y Y+ +E FL
Sbjct: 468 FFEEPFFHFISQVIPSVGEYLVPLALLISITTIVVLLSIAYAIFKYKNGITSKKEGGFL- 526
Query: 115 GFRLLLFSFMLALLGILVQALVIIFLTTAVVL 146
++LLL + + L Q + +F A L
Sbjct: 527 -YKLLLNQYYIPQ---LYQGMTKVFSAVASFL 554
>ref|NP_222755.1| putative [Helicobacter pylori J99]
Length = 351
Score = 23.5 bits (49), Expect = 3.2
Identities = 31/99 (31%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 25 IVLLSLFLC-ALGFIAG---AIGFYRLS--KITRHLSFFENFAFSFLAVI---LCAILSY 75
+V++ L C ALGF +GF +S K S E S L V+ LC +
Sbjct: 193 VVVICLKKCFALGFYKPFLLLVGFLNVSVTKALMDASMQEKQDLSLLLVVALFLCCVFII 252
Query: 76 LVPNASNALSLIGNGVSIFYLHKLYRELSLYTQERFFLS 114
VP NAL + N + Y KL LS + F S
Sbjct: 253 GVPFFINALFRVQNSLKETY--KLATNLSANLTQSAFQS 289
>ref|NP_223873.1| putative [Helicobacter pylori J99]
Length = 298
Score = 23.1 bits (48), Expect = 4.2
Identities = 11/27 (40%), Positives = 18/27 (65%)
Query: 118 LLLFSFMLALLGILVQALVIIFLTTAV 144
+L F+F ++LLG+ + I FL+T V
Sbjct: 182 ILAFAFGMSLLGLAGMFIDIPFLSTGV 208
>ref|NP_223812.1| putative [Helicobacter pylori J99]
Length = 687
Score = 22.7 bits (47), Expect = 5.5
Identities = 13/30 (43%), Positives = 18/30 (59%)
Query: 121 FSFMLALLGILVQALVIIFLTTAVVLMCVA 150
F M+A LGIL L+II + VV+ +A
Sbjct: 158 FVGMIASLGILGIMLIIIAILAMVVVKALA 187
>ref|NP_223125.1| amino acid permease [Helicobacter pylori J99]
Length = 475
Score = 22.7 bits (47), Expect = 5.5
Identities = 28/122 (22%), Positives = 56/122 (44%), Gaps = 16/122 (13%)
Query: 57 FENFAFSFLAVILCAILSYLVPNASNALSLIGNGVSIFYLHKLYRELSLYTQERFFLSGF 116
F ++A I+ A++ + + +N+ L G I+ L K +++Q +
Sbjct: 289 FIGMGIPYVADIMNAVIITAMFSTANS-GLYGASRMIYGLSKQKMFFKVFSQLNRQGTPT 347
Query: 117 RLLLFSFMLALLGILVQ---------ALV-IIFLTTAVVLMCVALGFLARAFLNFSQVFL 166
+ FS +L+G+LVQ AL+ +I T +V + V++ + +F + +L
Sbjct: 348 YAMFFSLSFSLIGLLVQIYAKENVVEALINVISFTVIIVWVSVSI-----SQYSFRKQYL 402
Query: 167 KA 168
KA
Sbjct: 403 KA 404
>ref|NP_222778.1| putative [Helicobacter pylori J99]
Length = 189
Score = 22.7 bits (47), Expect = 5.5
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 12/58 (20%)
Query: 20 NQLAYIVL---LSLFLCAL---------GFIAGAIGFYRLSKITRHLSFFENFAFSFL 65
N A++V+ + +F CA GF+ GF R K +L F EN FL
Sbjct: 5 NAYAFVVIEKSIMVFKCAKDKGLIPITEGFVPLKEGFLRSFKERCNLDFLENLDLLFL 62
>ref|NP_223435.1| putative [Helicobacter pylori J99]
Length = 88
Score = 22.3 bits (46), Expect = 7.2
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 144 VVLMCVALGFLA 155
VV +CVALGFL+
Sbjct: 5 VVSLCVALGFLS 16
>ref|NP_222934.1| putative [Helicobacter pylori J99]
Length = 385
Score = 22.3 bits (46), Expect = 7.2
Identities = 32/129 (24%), Positives = 56/129 (42%), Gaps = 16/129 (12%)
Query: 27 LLSLFLCALGFIAGAIGFYRLSKITRHLSFFENFAFSFLAVILCAILSYLVPNASNALSL 86
LLS F+ L I GF + + ++F+ F +F+ + L ++ A+ +++L
Sbjct: 17 LLSGFVVGLSVIPETAGFAIMVGLDVGVAFYTTFYMAFV-LSLFGARKAMISAAAGSVAL 75
Query: 87 IGNGVSIFYLHKLYRELSLYTQERFFLSGFRLLLFSFMLALLGILVQALVIIFLTTAVVL 146
I GV + Y E +G L+ + LLG L ++ F+ +V+
Sbjct: 76 ILVGV-----------VKNYGLE---YAGVATLMAGILQILLGYLKIGNLLKFIPQSVMY 121
Query: 147 MCV-ALGFL 154
V ALG L
Sbjct: 122 GFVNALGIL 130
>ref|NP_222889.1| APOLIPOPROTEIN N-ACYLTRANSFERASE [Helicobacter pylori J99]
Length = 425
Score = 22.3 bits (46), Expect = 7.2
Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 6/43 (13%)
Query: 34 ALGFIAGAIGFYRLSKITRHLSF-FENFAFSFLAVILCAILSY 75
ALGF GA+ FY + LSF + +F + +I+ L Y
Sbjct: 63 ALGFFVGALLFYWCA-----LSFRYSDFTYLLPLIIVLVALVY 100
>ref|NP_222736.1| putative [Helicobacter pylori J99]
Length = 87
Score = 22.3 bits (46), Expect = 7.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 22 LAYIVLLSLFLCALGFIA 39
L +I LLS FL LGF+A
Sbjct: 39 LPWIDLLSAFLLYLGFLA 56
>ref|NP_224206.1| putative UNDECAPRENYL-PHOSPHATE-ALPHA-N-
ACETYLGLUCOSAMINYLTRANSFERASE [Helicobacter pylori J99]
Length = 335
Score = 21.9 bits (45), Expect = 9.3
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 95 YLHKLYRELSLYTQERFFLSGFRLLLFSFMLALLGILVQALVIIFLTTAVVLMCVALGFL 154
+LH L L + Q+R F + L +F+L L + + ++F A L+ ++L F+
Sbjct: 259 HLHTL---LFKFLQQRSF--NYPNPLCAFILILCNLPFILISVLFRLDAYALIVISLVFI 313
Query: 155 ARAFLNFS 162
A + ++
Sbjct: 314 ACYLIGYA 321
>ref|NP_224167.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 526
Score = 21.9 bits (45), Expect = 9.3
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 124 MLALLG--ILVQALVIIFLTTAVVLMCVAL 151
++AL+G ILV + ++ + A V+ C+AL
Sbjct: 356 IIALVGGFILVMGFMALYYSMAGVIACMAL 385
>ref|NP_223716.1| putative ZINC-METALLO PROTEASE [Helicobacter pylori J99]
Length = 407
Score = 21.9 bits (45), Expect = 9.3
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 22 LAYIVLLSLFLCALGFIAGAIGFYRLSKITRHLSFFENFAFSFLAVIL 69
L Y+V LFL +A I +Y T HL + F FS +++ L
Sbjct: 98 LGYLVFALLFLAIQSVLALPISYY----TTMHLD--KEFGFSKVSLSL 139
>ref|NP_222955.1| putative [Helicobacter pylori J99]
Length = 179
Score = 21.9 bits (45), Expect = 9.3
Identities = 11/29 (37%), Positives = 18/29 (61%)
Query: 118 LLLFSFMLALLGILVQALVIIFLTTAVVL 146
L+LF +L LL +L++ ++TTA L
Sbjct: 32 LILFCAILLLLALLLRNRWASYITTAAFL 60
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.338 0.149 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,533
Number of Sequences: 1491
Number of extensions: 6875
Number of successful extensions: 55
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 26
length of query: 168
length of database: 494,079
effective HSP length: 71
effective length of query: 97
effective length of database: 388,218
effective search space: 37657146
effective search space used: 37657146
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 45 (21.9 bits)