BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645630|ref|NP_207806.1|
phosphatidylglycerophosphate synthase (pgsA) [Helicobacter pylori
26695]
(200 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223126.1| PHOSPHATIDYLGLYCEROPHOSPHATE SYNTHASE [Hel... 367 e-103
ref|NP_223073.1| PHOSPHATIDYLSERINE SYNTHASE [Helicobacter ... 34 0.003
ref|NP_223997.1| DNA transfer protein [Helicobacter pylori ... 32 0.012
ref|NP_223639.1| putative [Helicobacter pylori J99] 26 0.64
ref|NP_224018.1| putative [Helicobacter pylori J99] 26 0.84
ref|NP_222889.1| APOLIPOPROTEIN N-ACYLTRANSFERASE [Helicoba... 26 0.84
ref|NP_224030.1| putative [Helicobacter pylori J99] 25 1.9
ref|NP_223686.1| putative [Helicobacter pylori J99] 25 1.9
ref|NP_223086.1| 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANS... 24 3.2
ref|NP_223262.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 23 4.2
ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pyl... 23 5.4
ref|NP_224090.1| putative [Helicobacter pylori J99] 23 7.1
ref|NP_223240.1| putative [Helicobacter pylori J99] 23 7.1
ref|NP_223683.1| putative [Helicobacter pylori J99] 22 9.3
>ref|NP_223126.1| PHOSPHATIDYLGLYCEROPHOSPHATE SYNTHASE [Helicobacter pylori J99]
Length = 200
Score = 367 bits (941), Expect = e-103
Identities = 190/200 (95%), Positives = 193/200 (96%)
Query: 1 MCGAWFFGARVFEFFTSLFESMKVLKLLPNFLTILRIVLSLFLLFLLLNTRTYFSFLTPF 60
MCGA FF ARV EFFTSLFESMKVLKLLPNFLTILRIVLSLFLLFLLLNT TYFSFLTPF
Sbjct: 1 MCGAQFFRARVLEFFTSLFESMKVLKLLPNFLTILRIVLSLFLLFLLLNTHTYFSFLTPF 60
Query: 61 QTNMISSLVFLFAALTDLLDGYIARSYKAKSRFGEIFDPLADKILILSAFLGLVYLDRVN 120
NMISSLVFLFAALTDLLDGYIARSYKAKSRFGEIFDPLADKILILSAFLGLVYLDRVN
Sbjct: 61 HINMISSLVFLFAALTDLLDGYIARSYKAKSRFGEIFDPLADKILILSAFLGLVYLDRVN 120
Query: 121 AWIPFVILGREFFISGLRVLAANEKKDIPVNALGKYKTVSQVVAIGALLADVTYSYALVA 180
AW+PFVILGREFFISGLRVLAANEKKDIPVNALGKYKTVSQVVAIGALLA++TYSY LVA
Sbjct: 121 AWVPFVILGREFFISGLRVLAANEKKDIPVNALGKYKTVSQVVAIGALLANLTYSYVLVA 180
Query: 181 IAVFLTLYSGIDYTIKYYKS 200
IAVFLTLYSGIDYTIKYYKS
Sbjct: 181 IAVFLTLYSGIDYTIKYYKS 200
>ref|NP_223073.1| PHOSPHATIDYLSERINE SYNTHASE [Helicobacter pylori J99]
Length = 237
Score = 33.9 bits (76), Expect = 0.003
Identities = 26/80 (32%), Positives = 37/80 (45%), Gaps = 11/80 (13%)
Query: 25 LKLLPNFLTILRIVLSLFLLFLLLNTRTYFSFLTPFQTNMISSLVFLFAALTDLLDGYIA 84
L L PN T I L + +F + + +Q M LV + + + D LDG +A
Sbjct: 6 LYLFPNLFTASSIFLGMMSIF----------YASSYQFVMACWLV-VASLILDGLDGRVA 54
Query: 85 RSYKAKSRFGEIFDPLADKI 104
R S+FG FD LAD +
Sbjct: 55 RLTNTTSKFGIEFDSLADVV 74
>ref|NP_223997.1| DNA transfer protein [Helicobacter pylori J99]
Length = 409
Score = 32.0 bits (71), Expect = 0.012
Identities = 23/76 (30%), Positives = 35/76 (45%), Gaps = 8/76 (10%)
Query: 4 AWFFGARVFEFFTSLFESMKVLKLLPNFLTILRIVLSL----FLLFLLLNTRTYFS---- 55
A FFG R+ F + + LLP L + +LS+ ++ L +T+ +F
Sbjct: 222 ACFFGVRILSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKDSSF 281
Query: 56 FLTPFQTNMISSLVFL 71
F FQ +S LVFL
Sbjct: 282 FKRSFQAIALSVLVFL 297
>ref|NP_223639.1| putative [Helicobacter pylori J99]
Length = 328
Score = 26.2 bits (56), Expect = 0.64
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 3 GAWFFGARVFEFFTSLFESMKVLKLLP 29
G W F + VF F +L E++ ++ LLP
Sbjct: 99 GDWIFSSAVFFFALALIEAIIIVCLLP 125
>ref|NP_224018.1| putative [Helicobacter pylori J99]
Length = 178
Score = 25.8 bits (55), Expect = 0.84
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 15 FTSLFESMKVLKLLPNFLTILRIVLSLFLLFLLLNTRTYFSFLTPFQTNMISSLVFLFAA 74
FT + + L P LT+L + L L LL LL T LT T +++ L+ L
Sbjct: 60 FTKTYLKIPYFLLFPLLLTLL-LTLLLTLLLTLLLTLLLTLLLTLLLTLLLTLLLTLL-- 116
Query: 75 LTDLLDGYIARSYKAKSRFGEIFDPLA 101
LT LL + SY F + FD ++
Sbjct: 117 LTLLLTLLLTLSYNPCHTF-QPFDSIS 142
>ref|NP_222889.1| APOLIPOPROTEIN N-ACYLTRANSFERASE [Helicobacter pylori J99]
Length = 425
Score = 25.8 bits (55), Expect = 0.84
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 15/116 (12%)
Query: 5 WFFGARVFEFFTSLFESMKVLKLLPNFLTILRIVLSLFLLFLLLNTRTYFSFLTPFQTNM 64
+F GA +F + F LLP + ++ +V + LL YF L+ ++
Sbjct: 66 FFVGALLFYWCALSFRYSDFTYLLPLIIVLVALVYGVLFYLLLYFENPYFRLLSFLGSSF 125
Query: 65 ISSLVFLFAALTDLLDGYIARSYKAKSRFGEIFDPLADKILILSAFLGLVYLDRVN 120
I F D + S+ + S F DK+ + FL ++L N
Sbjct: 126 IHPFGF---------DWLVPDSFFSYSVF------RVDKLSLGLIFLACIFLSAQN 166
>ref|NP_224030.1| putative [Helicobacter pylori J99]
Length = 553
Score = 24.6 bits (52), Expect = 1.9
Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 31/158 (19%)
Query: 43 LLFLLLNTRTYFSFLTPFQTNMISSLVFLFAALTDLLDGYIARSYKAKSRFGEIFDPLAD 102
++F + T F F PF +I +L+ ++ T +SYK + L
Sbjct: 77 IIFSVAEIFTLFMFKMPFSKGLIDTLLATNSSETMA----FIKSYK---------NYLLY 123
Query: 103 KILILSAFLGLVYLDRVNAWIPFVILGREFFISGLRVLAANEKKDIPVNALGKYKTVSQV 162
LIL A L + + R A +P VI + GL +L +G + + +
Sbjct: 124 YALILIALLIAIKIIRFRALVPGVIAS----VLGLSIL-----------TIGSVRNIKHL 168
Query: 163 VAIGALLADVTYSYALVA--IAVFLTLYSGIDYTIKYY 198
A+L +S +L + +L+L+ IK+Y
Sbjct: 169 TKNDAILKRSLFSLSLARGFYSAYLSLFDR-QQAIKFY 205
>ref|NP_223686.1| putative [Helicobacter pylori J99]
Length = 623
Score = 24.6 bits (52), Expect = 1.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 23 KVLKLLPNFLTILRIVLSLFLLFLLLNTRTYFSFL 57
KVL + L + +I L+L +L LLL R ++L
Sbjct: 228 KVLPFTAHSLQVSKIALALMILALLLGLRKLITWL 262
>ref|NP_223086.1| 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE [Helicobacter
pylori J99]
Length = 270
Score = 23.9 bits (50), Expect = 3.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 93 FGEIFDPLADKILI 106
F +IFDPL D IL+
Sbjct: 35 FAQIFDPLVDVILV 48
>ref|NP_223262.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 660
Score = 23.5 bits (49), Expect = 4.2
Identities = 17/67 (25%), Positives = 31/67 (45%), Gaps = 4/67 (5%)
Query: 14 FFTSLFESMKVLKLLPNFLTILRIVLSLFLLFLLLNTRTYFSFLTPFQTNMISSLVFLFA 73
F S ++ + L N+ T+L+ +L + + N + TP +T I+S F
Sbjct: 474 FAISPIDAAEKYSLFSNYGTMLKPML----IESITNQQNEVKTFTPIETKKITSKEQAFL 529
Query: 74 ALTDLLD 80
L+ L+D
Sbjct: 530 TLSALMD 536
>ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
Length = 567
Score = 23.1 bits (48), Expect = 5.4
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 23 KVLKLLPNFLTILRIVLSLFLLFLLLNTRTYFSFLTPFQTNMI 65
K K+L +F +++ +L +LF+ Y + PF M+
Sbjct: 442 KTQKILGSFTPLIKYILVFIVLFIF-----YKKVIVPFSERML 479
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 22.7 bits (47), Expect = 7.1
Identities = 35/150 (23%), Positives = 57/150 (37%), Gaps = 12/150 (8%)
Query: 51 RTYFSFLTPFQTNMISSLVFLFAALTDLLDGYIARSYK---AKSRFGEIFDPLADKILIL 107
+ YF FL F N L +FA L + ++ + F K L+
Sbjct: 517 KAYFHFLRAFHLNSADYLSAVFAVLASHFTHEDTTEFLREITENFYSHDFSSPTQKALLS 576
Query: 108 SAFLGLVYLDRVN---AWIPFVILGREFFISGLRVLAANEKKD--IPVNALGKYKTVSQV 162
S L Y R N W+ F+ + L + A E KD + V + G K +
Sbjct: 577 SLIAYLNY--RTNWDMDWLKNAPKKLPFYYA-LEAVFAKESKDKKLMVQSFGNLKKMLPK 633
Query: 163 VAIGALLADVTYSYALVAIAVFLTLYSGID 192
I + ++ SY +I L++Y+ +D
Sbjct: 634 DLISNIFYEIV-SYYDASIRHTLSIYTLLD 662
>ref|NP_223240.1| putative [Helicobacter pylori J99]
Length = 232
Score = 22.7 bits (47), Expect = 7.1
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 146 KDIPVNALGKYKTVSQVVAIGALLADVTYSYALVAIAVFLTLYS 189
K +PV+ + + LA V Y++ L + F+T +S
Sbjct: 83 KPVPVDMRYIVSQKGSLACVVVSLAGVIYNFTLAVLLAFITHWS 126
>ref|NP_223683.1| putative [Helicobacter pylori J99]
Length = 335
Score = 22.3 bits (46), Expect = 9.3
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 12/96 (12%)
Query: 45 FLLLNTRTYFSFLTPFQTNMISSLV---FLFAALTDLLDGYIARSYKAKSRFGEIFDPLA 101
F LLN R + L+P + + S ++ F++ L D +I K
Sbjct: 91 FCLLNERVVGALLSPIELEIASKIIVSGFVWCLKESLEDLFIIEGCKI---------AFF 141
Query: 102 DKILILSAFLGLVYLDRVNAWIPFVILGREFFISGL 137
DK+ L F L +IL + FF S L
Sbjct: 142 DKLEWLHLFYKQERLKEDLKESRLIILNQSFFCSAL 177
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.332 0.146 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 191,766
Number of Sequences: 1491
Number of extensions: 7776
Number of successful extensions: 31
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 16
length of query: 200
length of database: 494,079
effective HSP length: 73
effective length of query: 127
effective length of database: 385,236
effective search space: 48924972
effective search space used: 48924972
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 46 (22.3 bits)