BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645639|ref|NP_207815.1| putative heat shock protein
(hspR) [Helicobacter pylori 26695]
(123 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223118.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 241 3e-66
ref|NP_224042.1| putative [Helicobacter pylori J99] 26 0.29
ref|NP_223331.1| putative [Helicobacter pylori J99] 26 0.29
ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) ... 26 0.38
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 25 0.50
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 25 0.50
ref|NP_222835.1| TRANSLATION INITIATION FACTOR IF-3 [Helico... 24 1.1
ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (... 24 1.1
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 24 1.4
ref|NP_224062.1| putative [Helicobacter pylori J99] 23 1.9
ref|NP_223988.1| putative [Helicobacter pylori J99] 23 1.9
ref|NP_223659.1| putative [Helicobacter pylori J99] 23 2.5
ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 23 3.2
ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 ... 23 3.2
ref|NP_223159.1| putative [Helicobacter pylori J99] 23 3.2
ref|NP_222795.1| putative Outer membrane protein [Helicobac... 23 3.2
ref|NP_223718.1| GLUTAMATE DEHYDROGENASE [Helicobacter pylo... 22 4.2
ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 22 4.2
ref|NP_223446.1| putative [Helicobacter pylori J99] 22 4.2
ref|NP_223253.1| putative [Helicobacter pylori J99] 22 4.2
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 22 4.2
ref|NP_223832.1| HISTIDYL-TRNA SYNTHETASE [Helicobacter pyl... 22 5.5
ref|NP_223761.1| putative [Helicobacter pylori J99] 22 5.5
ref|NP_223610.1| putative [Helicobacter pylori J99] 22 5.5
ref|NP_223334.1| putative [Helicobacter pylori J99] 22 5.5
ref|NP_223200.1| cag island protein [Helicobacter pylori J99] 22 5.5
ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) ... 22 5.5
ref|NP_223679.1| arginine decarboxylase [Helicobacter pylor... 22 7.2
ref|NP_223657.1| putative [Helicobacter pylori J99] 22 7.2
ref|NP_222984.1| GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE P... 22 7.2
ref|NP_222981.1| putative [Helicobacter pylori J99] 22 7.2
ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter p... 21 9.3
ref|NP_223770.1| putative [Helicobacter pylori J99] 21 9.3
ref|NP_223645.1| putative [Helicobacter pylori J99] 21 9.3
ref|NP_223473.1| putative [Helicobacter pylori J99] 21 9.3
ref|NP_223436.1| putative [Helicobacter pylori J99] 21 9.3
ref|NP_223162.1| putative paralog of HpaA [Helicobacter pyl... 21 9.3
>ref|NP_223118.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 123
Score = 241 bits (616), Expect = 3e-66
Identities = 121/123 (98%), Positives = 121/123 (98%)
Query: 1 MCDYDEPLYLISVVAKILGVHPQTLRQYEKEGLIEPSRTDGKMRLYSQRDMDKIKTILRL 60
M DYDEPLYLISVVAKILGVHPQT RQYEKEGLIEPSRTDGKMRLYSQRDMDKIKTILRL
Sbjct: 1 MYDYDEPLYLISVVAKILGVHPQTSRQYEKEGLIEPSRTDGKMRLYSQRDMDKIKTILRL 60
Query: 61 TRDMGVNLAGVDIILRLKEKLDELDNLNKELQDALHKHSKNTKTPTKNLNTPTNFYELIL 120
TRDMGVNLAGVDIILRLKEKLDELDNLNKELQDALHKHSKNTKTPTKNLNTPTNFYELIL
Sbjct: 61 TRDMGVNLAGVDIILRLKEKLDELDNLNKELQDALHKHSKNTKTPTKNLNTPTNFYELIL 120
Query: 121 FKK 123
FKK
Sbjct: 121 FKK 123
>ref|NP_224042.1| putative [Helicobacter pylori J99]
Length = 329
Score = 26.2 bits (56), Expect = 0.29
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 72 DIILRLK---EKLDELDNLNKELQDALHKHSKNTKTPTKNLNTPTNFYELILFKK 123
D+IL + E L EL NL L+ HK TK+PT +L+ ++Y + KK
Sbjct: 98 DVILMISYGGESL-ELLNLVSHLKRLSHKIITFTKSPTSSLSKLGDYYLSLKIKK 151
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 26.2 bits (56), Expect = 0.29
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 62 RDMGVNLAGVDIILRLKEKLDELDNLN 88
+++ +++ VD + KE+LD+L+NLN
Sbjct: 85 KNLKISIDHVDGTMNCKERLDKLENLN 111
>ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 673
Score = 25.8 bits (55), Expect = 0.38
Identities = 18/67 (26%), Positives = 28/67 (40%), Gaps = 10/67 (14%)
Query: 63 DMGVNLAGVDIILRLKEKLDELDNLNKELQD----------ALHKHSKNTKTPTKNLNTP 112
+ +N G +I LK L + LN E +D HK ++ K T++L
Sbjct: 465 EKALNTLGQEISSMLKASLGFANALNHESKDLKTCVDNLTKTAHKQERSLKNTTQSLEEI 524
Query: 113 TNFYELI 119
TN +I
Sbjct: 525 TNIITMI 531
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 25.4 bits (54), Expect = 0.50
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 31 EGLIEPSRTDGKMRLYSQRDMDKIKTILRLTRDMGVNLAGVDIILRLK----EKLDELDN 86
+ L S KM SQ + K + + ++ + + LK E D+L+N
Sbjct: 634 KNLESKSGNKNKMEAKSQANSQKDEIFALINKEANRDARAIAYAQNLKGIKRELSDKLEN 693
Query: 87 LNKELQD 93
+NK+L+D
Sbjct: 694 INKDLKD 700
Score = 22.7 bits (47), Expect = 3.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 82 DELDNLNKELQDALHKHSKNTKTPTKNLNT 111
DE+ K+L+ +L K + K KNL +
Sbjct: 609 DEVKQAQKDLEKSLKKRERLEKDVAKNLES 638
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 25.4 bits (54), Expect = 0.50
Identities = 11/29 (37%), Positives = 18/29 (61%)
Query: 85 DNLNKELQDALHKHSKNTKTPTKNLNTPT 113
+++ KE Q+ + +K TK P+K TPT
Sbjct: 249 EDIKKEWQEKDKQETKKTKKPSKPKATPT 277
Score = 21.2 bits (43), Expect = 9.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 81 LDELDNLNKELQDALHKHSKNTKTPTKNLN 110
L E DNLNKE ++ + + N + + N
Sbjct: 312 LHEQDNLNKEEEEKEARQNINDRVRVQRKN 341
>ref|NP_222835.1| TRANSLATION INITIATION FACTOR IF-3 [Helicobacter pylori J99]
Length = 203
Score = 24.3 bits (51), Expect = 1.1
Identities = 12/38 (31%), Positives = 23/38 (59%), Gaps = 1/38 (2%)
Query: 53 KIKTILRLTRDMGVNLAGVDIILRLKEKLDELDNLNKE 90
K K +L+ R+ + AG+D++ R++ + +L N KE
Sbjct: 118 KFKVVLK-GRESQNSKAGLDVLFRVQTMMQDLANPEKE 154
>ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 343
Score = 24.3 bits (51), Expect = 1.1
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 37/131 (28%)
Query: 24 TLRQYEKEGLIEPSRTDG-KMRLYSQRDMDKIKTILRLTRD-------MGVNLAGVDIIL 75
TL +++KEGLIE S + + ++Y+ + K + +D N +D+I+
Sbjct: 217 TLERWDKEGLIEYSNNNNPRKKIYALEQVGKRVQDIWEFKDPQYPSYPTEKNAQLLDLII 276
Query: 76 R-------------------------LKEKLDELDNLNKELQDALHKHSKNTKTPTKNLN 110
+ L+ K +DN + +Q +K +T TK+L
Sbjct: 277 KTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGIDNSDLAIQACKNK----LETITKDLF 332
Query: 111 TPTNFYELILF 121
NFY+ ++F
Sbjct: 333 VSQNFYDFLVF 343
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 23.9 bits (50), Expect = 1.4
Identities = 10/39 (25%), Positives = 18/39 (45%)
Query: 25 LRQYEKEGLIEPSRTDGKMRLYSQRDMDKIKTILRLTRD 63
L +EKE ++ P + G +Y + KT+ + D
Sbjct: 1106 LEDFEKEKIVYPETSQGAYFIYENSGIFLEKTVFMIVSD 1144
>ref|NP_224062.1| putative [Helicobacter pylori J99]
Length = 258
Score = 23.5 bits (49), Expect = 1.9
Identities = 13/42 (30%), Positives = 25/42 (58%), Gaps = 2/42 (4%)
Query: 73 IILRLKEKLDEL--DNLNKELQDALHKHSKNTKTPTKNLNTP 112
I++ +KE + E+ +++ + Q+A K S KTP + + TP
Sbjct: 52 ILVGVKESVKEVKEESVKEIHQNAEEKQSLGIKTPQEEIITP 93
>ref|NP_223988.1| putative [Helicobacter pylori J99]
Length = 290
Score = 23.5 bits (49), Expect = 1.9
Identities = 10/43 (23%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 79 EKLDELDNLNKELQDALHKHSKNTK----TPTKNLNTPTNFYE 117
+K ++DN ++L+ +H++ +N + + LN N+Y+
Sbjct: 122 KKRGQIDNFERKLEALIHRYGENIQGYFYFIDEGLNKNQNYYK 164
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 23.1 bits (48), Expect = 2.5
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 80 KLDELDNLNKELQDALHKHSK 100
KL ELDN+ +LQD L K K
Sbjct: 230 KLKELDNIKLQLQD-LEKEEK 249
>ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 649
Score = 22.7 bits (47), Expect = 3.2
Identities = 12/39 (30%), Positives = 19/39 (47%)
Query: 71 VDIILRLKEKLDELDNLNKELQDALHKHSKNTKTPTKNL 109
VD+I LK + + D L ++ SK T+T T +
Sbjct: 35 VDLIFDLKSIVKDKDTKTNTLNFSVTLSSKGTQTKTNEI 73
>ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 homolog) [Helicobacter
pylori J99]
Length = 983
Score = 22.7 bits (47), Expect = 3.2
Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 11 ISVVAKILG-VHPQTLRQYEKEGLI 34
I ++ ++L HP L++Y K+G+I
Sbjct: 312 IELIEELLSKYHPTRLKEYTKDGII 336
>ref|NP_223159.1| putative [Helicobacter pylori J99]
Length = 181
Score = 22.7 bits (47), Expect = 3.2
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 67 NLAGVDIILRLKEKLDELDN-LNKELQDALHKHSKNTKTPTKNLNTPTNFYELIL 120
NL + + + ++ E+ N L K+LQ+ALH ++ T+ +L E++L
Sbjct: 5 NLPNSTLEITQQPEVKEITNELLKQLQNALHSNALFTEQVELSLKGIVRILEVLL 59
>ref|NP_222795.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 255
Score = 22.7 bits (47), Expect = 3.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 97 KHSKNTKTPTKNLNTPTN 114
++ T+TP+ N NTP N
Sbjct: 34 ENQNTTRTPSANNNTPIN 51
>ref|NP_223718.1| GLUTAMATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 448
Score = 22.3 bits (46), Expect = 4.2
Identities = 11/51 (21%), Positives = 23/51 (44%)
Query: 65 GVNLAGVDIILRLKEKLDELDNLNKELQDALHKHSKNTKTPTKNLNTPTNF 115
GV+++G+++ + ++ +L + + KN K PTNF
Sbjct: 377 GVSVSGLEMAQNASMHPWSFEVVDAKLHHIMKEIYKNVSQTAKEFKDPTNF 427
>ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 363
Score = 22.3 bits (46), Expect = 4.2
Identities = 12/57 (21%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 39 TDGKMRLYSQRDMDKIKTILRLTRDMGVNLAGVDIILRLKEKLDELDNLNKELQDAL 95
T +M+ +++ M ++ + ++ ++ +L L+ D ++NLNK + D+L
Sbjct: 63 TQVEMQEENKKTMQEVASAMKSNKETNESLKDFQGALK-----DTMENLNKGMDDSL 114
>ref|NP_223446.1| putative [Helicobacter pylori J99]
Length = 506
Score = 22.3 bits (46), Expect = 4.2
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 82 DELDNLNKELQDALHKHSKNTKTPTKNLNTPTNFYELILF 121
DEL + K++ +AL + +N K +++ + LF
Sbjct: 312 DELPHFKKDILEALREPLENNKLVISRVHSKIEYETSFLF 351
>ref|NP_223253.1| putative [Helicobacter pylori J99]
Length = 329
Score = 22.3 bits (46), Expect = 4.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 98 HSKNTKTPTKNLNTPTNFYE 117
H+K TK K NTP N Y+
Sbjct: 251 HAKVTKERIKTDNTPYNTYK 270
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 22.3 bits (46), Expect = 4.2
Identities = 14/54 (25%), Positives = 28/54 (50%), Gaps = 4/54 (7%)
Query: 52 DKIKTIL----RLTRDMGVNLAGVDIILRLKEKLDELDNLNKELQDALHKHSKN 101
DK++T+ RL + + + + I L + LD ++ K+L+DA+ + N
Sbjct: 397 DKVETLKINASRLGDESAIKIPNLPINLDIPILLDVKNSTIKDLKDAIKERFNN 450
>ref|NP_223832.1| HISTIDYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 442
Score = 21.9 bits (45), Expect = 5.5
Identities = 15/71 (21%), Positives = 33/71 (46%)
Query: 23 QTLRQYEKEGLIEPSRTDGKMRLYSQRDMDKIKTILRLTRDMGVNLAGVDIILRLKEKLD 82
+ LR +K I + + +++ D + IK +L + + +L+ + ++ D
Sbjct: 180 EVLRIVDKLEKIGLNGVEEELKKECDLDSNTIKDLLEMVQIKQNDLSHAEFFEKIAYLKD 239
Query: 83 ELDNLNKELQD 93
+NL K +QD
Sbjct: 240 YNENLKKGIQD 250
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 21.9 bits (45), Expect = 5.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 85 DNLNKELQDALHKHSK 100
+NLN E+ + LHK++K
Sbjct: 107 NNLNPEMVEFLHKNNK 122
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 21.9 bits (45), Expect = 5.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 77 LKEKLDELDNLNKELQDALHKHSKNTK 103
LK+++ EL+ L EL++ + KN K
Sbjct: 128 LKKEMLELEKLALELENLVENEVKNIK 154
>ref|NP_223334.1| putative [Helicobacter pylori J99]
Length = 263
Score = 21.9 bits (45), Expect = 5.5
Identities = 13/39 (33%), Positives = 18/39 (45%)
Query: 77 LKEKLDELDNLNKELQDALHKHSKNTKTPTKNLNTPTNF 115
+ K EL N N +Q L S ++LN PTN+
Sbjct: 145 MDSKSVELSNSNTFIQSLLKLGSFLHGKTIESLNNPTNY 183
>ref|NP_223200.1| cag island protein [Helicobacter pylori J99]
Length = 199
Score = 21.9 bits (45), Expect = 5.5
Identities = 14/49 (28%), Positives = 26/49 (52%), Gaps = 1/49 (2%)
Query: 29 EKEGLIEPSRTDGKMRLYSQRDM-DKIKTILRLTRDMGVNLAGVDIILR 76
+KE LIE + + + ++ + D+IKT+ + M N +D +LR
Sbjct: 18 KKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLR 66
>ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 564
Score = 21.9 bits (45), Expect = 5.5
Identities = 12/44 (27%), Positives = 22/44 (49%), Gaps = 9/44 (20%)
Query: 72 DIILRLKEKLDE---------LDNLNKELQDALHKHSKNTKTPT 106
D++++L E L+ L + K L+ +HK+ KN+ T
Sbjct: 38 DVLVQLMEHLETGQYKKREKTLAYMTKLLEQGIHKYYKNSDNAT 81
>ref|NP_223679.1| arginine decarboxylase [Helicobacter pylori J99]
Length = 615
Score = 21.6 bits (44), Expect = 7.2
Identities = 10/39 (25%), Positives = 22/39 (55%)
Query: 73 IILRLKEKLDELDNLNKELQDALHKHSKNTKTPTKNLNT 111
I + ++ ++ L K L++A + +++ K KNLN+
Sbjct: 234 IHFHIGSQISDISPLKKALREAGNLYAELRKMGAKNLNS 272
>ref|NP_223657.1| putative [Helicobacter pylori J99]
Length = 325
Score = 21.6 bits (44), Expect = 7.2
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 40 DGKMRLYSQRDMDKIKTIL 58
D +R+Y + DM+KI +I+
Sbjct: 239 DALLRIYPRIDMNKIHSII 257
>ref|NP_222984.1| GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE PYROPHOSPHATASE
[Helicobacter pylori J99]
Length = 484
Score = 21.6 bits (44), Expect = 7.2
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 63 DMGVNLAGVDIILRLKEKLDELDNLNKELQDALHKHSKNTKTPTKNLNT 111
D NLA ++ I+ LKE L +N+E D++ + ++L T
Sbjct: 228 DAHKNLAFIEKIVMLKEDKLRLLGVNEERLDSIRSGALILSVVLEHLKT 276
>ref|NP_222981.1| putative [Helicobacter pylori J99]
Length = 431
Score = 21.6 bits (44), Expect = 7.2
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 84 LDNLNKE----LQDALHKHSKNTKTPTKNLNTPTNFYELILFK 122
L N KE LQ + ++ + + K LNT T F EL L K
Sbjct: 176 LQNRKKEGLDLLQSHIDRYGCSEQLCQKALNTFTQFNELDLAK 218
>ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter pylori J99]
Length = 171
Score = 21.2 bits (43), Expect = 9.3
Identities = 15/47 (31%), Positives = 19/47 (39%)
Query: 72 DIILRLKEKLDELDNLNKELQDALHKHSKNTKTPTKNLNTPTNFYEL 118
+I +LK + L KEL+ A K K T T YEL
Sbjct: 68 EIQAQLKVSKEHKKKLLKELEQAKEKAELIISDANKEAYTITQKYEL 114
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 21.2 bits (43), Expect = 9.3
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 78 KEKLDELDNLNKELQDALHKHSKN 101
++ + +LD NKE+ + L K S++
Sbjct: 121 QQAIQQLDKQNKEMSELLTKLSQD 144
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 21.2 bits (43), Expect = 9.3
Identities = 13/36 (36%), Positives = 18/36 (49%), Gaps = 6/36 (16%)
Query: 76 RLKEKLDELDNLNKELQDALHKHSKNTKTPTKNLNT 111
+LKE+ ++ NKE DA+ K NLNT
Sbjct: 2131 KLKEQNKQIAEQNKEKLDAIKKQF------ASNLNT 2160
>ref|NP_223473.1| putative [Helicobacter pylori J99]
Length = 190
Score = 21.2 bits (43), Expect = 9.3
Identities = 12/38 (31%), Positives = 19/38 (49%)
Query: 47 SQRDMDKIKTILRLTRDMGVNLAGVDIILRLKEKLDEL 84
+Q D KT R+ N+ GV + K+K+DE+
Sbjct: 83 NQTDAKGRKTTRPSCRECRKNIDGVKLSSTEKKKMDEI 120
>ref|NP_223436.1| putative [Helicobacter pylori J99]
Length = 429
Score = 21.2 bits (43), Expect = 9.3
Identities = 12/24 (50%), Positives = 12/24 (50%)
Query: 97 KHSKNTKTPTKNLNTPTNFYELIL 120
KH K T LNTPT LIL
Sbjct: 283 KHDAFFKNSTLILNTPTTKSGLIL 306
>ref|NP_223162.1| putative paralog of HpaA [Helicobacter pylori J99]
Length = 282
Score = 21.2 bits (43), Expect = 9.3
Identities = 7/13 (53%), Positives = 11/13 (83%)
Query: 85 DNLNKELQDALHK 97
+NL+K +DA+HK
Sbjct: 227 ENLDKNREDAIHK 239
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.138 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,955
Number of Sequences: 1491
Number of extensions: 6277
Number of successful extensions: 47
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 40
length of query: 123
length of database: 494,079
effective HSP length: 67
effective length of query: 56
effective length of database: 394,182
effective search space: 22074192
effective search space used: 22074192
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)