BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645641|ref|NP_207817.1| ferric uptake regulation
protein (fur) [Helicobacter pylori 26695]
(150 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223116.1| FERRIC UPTAKE REGULATION PROTEIN [Helicoba... 297 1e-82
ref|NP_223610.1| putative [Helicobacter pylori J99] 27 0.24
ref|NP_223287.1| putative [Helicobacter pylori J99] 26 0.41
ref|NP_223138.1| putative [Helicobacter pylori J99] 25 1.2
ref|NP_223965.1| putative [Helicobacter pylori J99] 24 1.6
ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Heli... 24 2.0
ref|NP_223586.1| putative [Helicobacter pylori J99] 23 2.7
ref|NP_224054.1| putative [Helicobacter pylori J99] 23 3.5
ref|NP_223959.1| putative [Helicobacter pylori J99] 23 3.5
ref|NP_223847.1| abc transporter, ATP-binding protein [Heli... 23 3.5
ref|NP_223803.1| putative cAMP-induced cell filamentation p... 23 3.5
ref|NP_222846.1| putative [Helicobacter pylori J99] 23 3.5
ref|NP_223761.1| putative [Helicobacter pylori J99] 23 4.5
ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99] 22 5.9
ref|NP_223070.1| putative [Helicobacter pylori J99] 22 5.9
ref|NP_224188.1| putative [Helicobacter pylori J99] 22 7.7
ref|NP_224187.1| putative [Helicobacter pylori J99] 22 7.7
ref|NP_223508.1| GMP REDUCTASE [Helicobacter pylori J99] 22 7.7
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 22 7.7
ref|NP_222737.1| DNA transfer protein [Helicobacter pylori ... 22 7.7
>ref|NP_223116.1| FERRIC UPTAKE REGULATION PROTEIN [Helicobacter pylori J99]
Length = 150
Score = 297 bits (760), Expect = 1e-82
Identities = 146/149 (97%), Positives = 149/149 (99%)
Query: 1 MKRLETLESILERLRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTS 60
M+RLETLESILERLRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTS
Sbjct: 1 MRRLETLESILERLRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTS 60
Query: 61 ISSVYRILNFLEKENFICVLETSKSGRRYEIAAKEHHDHIICLHCGKIIEFADPEIENRQ 120
ISSVYRILNFLEKENFICVLETSKSGRRYEIAAKEHHDHIICLHCGKIIEFADPEIE+RQ
Sbjct: 61 ISSVYRILNFLEKENFICVLETSKSGRRYEIAAKEHHDHIICLHCGKIIEFADPEIEHRQ 120
Query: 121 NEVVKKYQAKLISHDMKMFVWCKECQESE 149
NEVVKKYQAKLISHDMKMFVWCKECQES+
Sbjct: 121 NEVVKKYQAKLISHDMKMFVWCKECQESD 149
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 26.9 bits (58), Expect = 0.24
Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 19/125 (15%)
Query: 2 KRLETLESILERLRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSI 61
K +++LE ++ R + K L + + + + + L L + + +D N I
Sbjct: 16 KEIDSLEPLIREKRKDLDK-ALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKI 74
Query: 62 SSVYRILNFLEKENFICVLETSKSGRRYEIAAKEHHDHIICLHCGKIIEFADPEIENRQN 121
+S+ + ++ ++ E + L E AKE + A+ EIEN QN
Sbjct: 75 ASIQKKMSEIKSERELRSLNIE------EDIAKERSNQ------------ANREIENLQN 116
Query: 122 EVVKK 126
E+ K
Sbjct: 117 EIKHK 121
>ref|NP_223287.1| putative [Helicobacter pylori J99]
Length = 359
Score = 26.2 bits (56), Expect = 0.41
Identities = 14/55 (25%), Positives = 27/55 (48%)
Query: 2 KRLETLESILERLRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKD 56
KRL +++ L+ M N L +K + ++ RSG + ++ H + +KD
Sbjct: 283 KRLSHIKTPLDISVMGCVVNALGEAKHADMAIAFGNRSGLIIKEGKVIHKLAEKD 337
>ref|NP_223138.1| putative [Helicobacter pylori J99]
Length = 495
Score = 24.6 bits (52), Expect = 1.2
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 95 EHHDHIICLHCGKIIEFADPEIENRQNEVVKKYQ 128
E ++ LH ++++ +PEI + NE +KKYQ
Sbjct: 308 EEDSYLNILHAKEVLD-NNPEIIDSVNEKLKKYQ 340
>ref|NP_223965.1| putative [Helicobacter pylori J99]
Length = 412
Score = 24.3 bits (51), Expect = 1.6
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 17/81 (20%)
Query: 1 MKRLETLESILERLRMSIKKNGLKNSKQREEVVSVL---------YRSGTHLSPEEITHS 51
+K+LETL+ LE + IK+N E++ + Y + + ++IT
Sbjct: 337 LKKLETLQKNLESINKIIKQN--------EKIAQIYALDLKTNGDYNAYYNALNDKITIQ 388
Query: 52 IRQKDKNTSISSVYRILNFLE 72
I Q + ++++S Y L L+
Sbjct: 389 ITQLETLSALNSAYLSLQNLK 409
>ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Helicobacter pylori J99]
Length = 425
Score = 23.9 bits (50), Expect = 2.0
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 10 ILERLRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILN 69
+LE R+ + +G + + E+V +L++SG + Q + + L+
Sbjct: 13 LLENKRVLLLVSGSIAAYKSLELVRLLFKSGASI----------QVVMSKGAQKFIKPLS 62
Query: 70 FLEKENFICVLETSKSGRRYEIAAKEHHDHIICLHCGKIIEFA 112
F E + VL Y K HH+HI C ++ FA
Sbjct: 63 F-EALSHHKVLHDRNEKWYYNHQNKLHHNHIACAASADLLIFA 104
>ref|NP_223586.1| putative [Helicobacter pylori J99]
Length = 251
Score = 23.5 bits (49), Expect = 2.7
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 47 EITHSIRQKDKNTSISSVYRILNFLEKENFICVLETSKS 85
+++ S+ Q+ K ++ ++ ILN + +F VLE+ +
Sbjct: 147 KLSFSLEQESKRINLKALQNILNNAKSVHFKFVLESQNA 185
>ref|NP_224054.1| putative [Helicobacter pylori J99]
Length = 274
Score = 23.1 bits (48), Expect = 3.5
Identities = 16/62 (25%), Positives = 30/62 (47%), Gaps = 2/62 (3%)
Query: 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFICVLETSKSGRRYEIA 92
+ +L++ G + + I+ K+K I SV L+F K +F C LE + + ++
Sbjct: 15 LKILHKEGAY--HKIISRMCLVKNKLKDIISVKNALSFSLKGDFDCPLEENSLFKALQVL 72
Query: 93 AK 94
K
Sbjct: 73 KK 74
>ref|NP_223959.1| putative [Helicobacter pylori J99]
Length = 376
Score = 23.1 bits (48), Expect = 3.5
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 54 QKDKNTSISSVYRILNFLEKENFI 77
+K+ TS ++Y++L+ LEK+ I
Sbjct: 224 KKELKTSKDTLYKLLHALEKQRII 247
>ref|NP_223847.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 578
Score = 23.1 bits (48), Expect = 3.5
Identities = 15/59 (25%), Positives = 29/59 (48%), Gaps = 3/59 (5%)
Query: 12 ERLRMSIKKNGLKNS---KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRI 67
E L+ + + G K S KQR + LY + L +E T ++ + ++ + +Y+I
Sbjct: 487 EGLKTQVGEGGAKLSGGQKQRIGIARALYDNPEILVLDEATSALDNETESKIMDEIYQI 545
>ref|NP_223803.1| putative cAMP-induced cell filamentation protein [Helicobacter
pylori J99]
Length = 175
Score = 23.1 bits (48), Expect = 3.5
Identities = 14/52 (26%), Positives = 24/52 (45%), Gaps = 6/52 (11%)
Query: 89 YEIAAKEHHDHII------CLHCGKIIEFADPEIENRQNEVVKKYQAKLISH 134
YE A K +I CL+ I+ + +N N++++KY I+H
Sbjct: 43 YEFAGKIRDKNISNFRFANCLYLDLILPRMESMPQNNFNQIIEKYVEMNIAH 94
>ref|NP_222846.1| putative [Helicobacter pylori J99]
Length = 211
Score = 23.1 bits (48), Expect = 3.5
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 95 EHHDHIICLHCGKIIEFADPEIENRQNEVVKKYQAKLISH 134
E + H L+ ++IE A +E + ++ +Q+K + H
Sbjct: 39 EEYKHFQVLNKAELIESAKENLEQAILKALENFQSKKVLH 78
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 22.7 bits (47), Expect = 4.5
Identities = 16/70 (22%), Positives = 34/70 (47%), Gaps = 6/70 (8%)
Query: 7 LESILERLRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYR 66
LE IL+R NG+ ++ ++ +SV+ PE I ++ ++N ++ Y+
Sbjct: 843 LEHILKRREDQALNNGINEAEAKDYAISVI-----KTIPEVIDKGVK-VERNGRVAIEYQ 896
Query: 67 ILNFLEKENF 76
+ K+N+
Sbjct: 897 NIRVGLKDNW 906
>ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99]
Length = 425
Score = 22.3 bits (46), Expect = 5.9
Identities = 25/129 (19%), Positives = 52/129 (39%), Gaps = 16/129 (12%)
Query: 6 TLESILERLRMSI-----KKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTS 60
++E+I++ L I ++N K + +E + L +L+P +I QKDK +
Sbjct: 202 SIEAIIDALGSQISITLVEENKRKAFETKELAQNFLNDLKNNLNPLAFLDAIEQKDKEKA 261
Query: 61 ISSVYRILNFLEKENFICVLETSKSGRRYEIAAKEHHDHIICLHCGKIIEFADPEIENRQ 120
+ N L+ R + K+ +H L +I + + E
Sbjct: 262 PPKPFTTSNLLK-----------DGARILGMGVKQIQEHAQKLFEAGLITYIRTDSEALS 310
Query: 121 NEVVKKYQA 129
E +++++A
Sbjct: 311 KEYLQEHEA 319
>ref|NP_223070.1| putative [Helicobacter pylori J99]
Length = 272
Score = 22.3 bits (46), Expect = 5.9
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 67 ILNFLEKENFICVLE---TSKSGRRYEIAAKEHH 97
I F++K+ F L T K GR+Y + A +H
Sbjct: 176 IKRFVKKDLFTETLSIKITDKKGRKYALIANYNH 209
>ref|NP_224188.1| putative [Helicobacter pylori J99]
Length = 333
Score = 21.9 bits (45), Expect = 7.7
Identities = 11/23 (47%), Positives = 15/23 (64%)
Query: 2 KRLETLESILERLRMSIKKNGLK 24
K ETL+ I ERL+ KK G++
Sbjct: 170 KMQETLDFIKERLKNVKKKKGVE 192
>ref|NP_224187.1| putative [Helicobacter pylori J99]
Length = 335
Score = 21.9 bits (45), Expect = 7.7
Identities = 11/23 (47%), Positives = 15/23 (64%)
Query: 2 KRLETLESILERLRMSIKKNGLK 24
K ETL+ I ERL+ KK G++
Sbjct: 172 KMQETLDFIAERLKGVKKKKGVE 194
>ref|NP_223508.1| GMP REDUCTASE [Helicobacter pylori J99]
Length = 325
Score = 21.9 bits (45), Expect = 7.7
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 3 RLETLESILERLRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSIS 62
R+ ++ + ER +S G+K +EE + V + L+P+ IT I N+ I
Sbjct: 73 RIPFVKKMKERQLISSISVGVK----KEECLFVEELAKQGLTPDYITIDIAHGHSNSVIE 128
Query: 63 SVYRI 67
+ RI
Sbjct: 129 MIQRI 133
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 21.9 bits (45), Expect = 7.7
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 2 KRLETLESILERLRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQ----KDK 57
KR+ E L+ + +IK+N S + + S L+ T + E ++ Q DK
Sbjct: 568 KRVVGQEKALKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDK 627
Query: 58 N 58
N
Sbjct: 628 N 628
>ref|NP_222737.1| DNA transfer protein [Helicobacter pylori J99]
Length = 787
Score = 21.9 bits (45), Expect = 7.7
Identities = 13/32 (40%), Positives = 17/32 (52%), Gaps = 5/32 (15%)
Query: 51 SIRQKDKNTSISSVYRILNFLEKENFICVLET 82
S+ D TS+ IL L KEN + V+ET
Sbjct: 329 SLEDLDAQTSL-----ILGLLFKENLVGVIET 355
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.132 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,298
Number of Sequences: 1491
Number of extensions: 6789
Number of successful extensions: 34
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 20
length of query: 150
length of database: 494,079
effective HSP length: 70
effective length of query: 80
effective length of database: 389,709
effective search space: 31176720
effective search space used: 31176720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)