BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645642|ref|NP_207818.1| hypothetical protein
[Helicobacter pylori 26695]
(165 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223115.1| putative [Helicobacter pylori J99] 322 2e-90
ref|NP_223918.1| INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE [Heli... 25 1.1
ref|NP_223443.1| putative Outer membrane protein [Helicobac... 25 1.1
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 25 1.4
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 23 3.1
ref|NP_223009.1| putative [Helicobacter pylori J99] 23 3.1
ref|NP_222868.1| putative lipopolysaccharide biosynthesis p... 23 3.1
ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 23 4.1
ref|NP_224034.1| DNA transfer protein [Helicobacter pylori ... 23 5.3
ref|NP_224148.1| putative [Helicobacter pylori J99] 22 6.9
ref|NP_224079.1| BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE... 22 6.9
ref|NP_223809.1| putative [Helicobacter pylori J99] 22 6.9
ref|NP_223787.1| putative [Helicobacter pylori J99] 22 6.9
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 22 6.9
ref|NP_223384.1| putative [Helicobacter pylori J99] 22 9.1
ref|NP_223272.1| putative efflux transporter [Helicobacter ... 22 9.1
ref|NP_222953.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobac... 22 9.1
ref|NP_222912.1| putative [Helicobacter pylori J99] 22 9.1
ref|NP_222904.1| S-adenosylmethionine synthetase [Helicobac... 22 9.1
>ref|NP_223115.1| putative [Helicobacter pylori J99]
Length = 167
Score = 322 bits (826), Expect = 2e-90
Identities = 155/167 (92%), Positives = 164/167 (97%), Gaps = 2/167 (1%)
Query: 1 MRLVSLVI--VFCCFLRAVELPGIYQTQEFLYMKSSFVEFFEHNGKFYAYGISDVDGSKA 58
M+LVSL++ VFCCFL AVELPG+YQTQEFLYMKSSFVEFFEHNGKFYAYGISDVDGSKA
Sbjct: 1 MKLVSLIVALVFCCFLGAVELPGVYQTQEFLYMKSSFVEFFEHNGKFYAYGISDVDGSKA 60
Query: 59 RKDKLNPNPKLRNRSDKGVVFLSDLIKVGKRSYKGGKAYNFYDGKTYYVRVTQNSNGDLE 118
+KDKLNPNPKLRNRSDKGVVFLSDLIKVG++SYKGGKAYNFYDGKTY+VRVTQNSNGDLE
Sbjct: 61 KKDKLNPNPKLRNRSDKGVVFLSDLIKVGEQSYKGGKAYNFYDGKTYHVRVTQNSNGDLE 120
Query: 119 FTSSYDKWGYVGKTFTWKRLSDEEIKNLKLKRFNLDEVLKTIKDSPI 165
FTSSYDKWGYVGKTFTWKRLSDEEIKNLKLKRFNLDEVLKT+KDSPI
Sbjct: 121 FTSSYDKWGYVGKTFTWKRLSDEEIKNLKLKRFNLDEVLKTLKDSPI 167
>ref|NP_223918.1| INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE [Helicobacter pylori J99]
Length = 452
Score = 25.0 bits (53), Expect = 1.1
Identities = 12/38 (31%), Positives = 19/38 (49%)
Query: 124 DKWGYVGKTFTWKRLSDEEIKNLKLKRFNLDEVLKTIK 161
DK G G +F W+ L + + + NLD + K +K
Sbjct: 381 DKMGGNGVSFDWEILENAKTPFMLAGGLNLDNIQKALK 418
>ref|NP_223443.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 499
Score = 25.0 bits (53), Expect = 1.1
Identities = 13/34 (38%), Positives = 17/34 (49%), Gaps = 2/34 (5%)
Query: 97 YNFYDGKTYYVRVTQNSNGDLEFTSSYDKWGYVG 130
YNFY KTY ++ Q N + + Y W Y G
Sbjct: 248 YNFYSPKTYTLKNGQTINPGVH--AFYIIWNYKG 279
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 24.6 bits (52), Expect = 1.4
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 131 KTFTWKRLSDEEIKNLKLKRFNLDEVLKTIKD 162
KT TW+ L+ ++ K L +RF +++K+I D
Sbjct: 436 KTLTWESLATDKDKELLRERF---KIVKSIVD 464
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 23.5 bits (49), Expect = 3.1
Identities = 10/34 (29%), Positives = 17/34 (49%)
Query: 101 DGKTYYVRVTQNSNGDLEFTSSYDKWGYVGKTFT 134
D TY+V+ TQ++ F +++ K FT
Sbjct: 1239 DNNTYFVQFTQSNGQKFVFEETFNPGSITYKYFT 1272
>ref|NP_223009.1| putative [Helicobacter pylori J99]
Length = 331
Score = 23.5 bits (49), Expect = 3.1
Identities = 14/55 (25%), Positives = 22/55 (39%), Gaps = 1/55 (1%)
Query: 74 DKGVVFLSDLIKVGKRSYKGGKAYNFYD-GKTYYVRVTQNSNGDLEFTSSYDKWG 127
D+ V S + + Y GG T + + +G+L F + YD WG
Sbjct: 204 DENGVIASAITRSDTSDYHGGPTKGIKGIAYTNFALLAITISGELLFENGYDLWG 258
>ref|NP_222868.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 377
Score = 23.5 bits (49), Expect = 3.1
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 7 VIVFCCFLRAVELPGIYQTQEFLYMKSSFV 36
++ C+ + ++LP IY F+ + F+
Sbjct: 251 LLTLACYQKVLQLPYIYNAHPFMANQKRFI 280
>ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 363
Score = 23.1 bits (48), Expect = 4.1
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 47 AYGISDVDGSKARKDKLNPNPKLRNRSDKGV---VFLSDL 83
A +++V G+KA +++ P + N DK +FL L
Sbjct: 2 AIDLAEVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQL 41
>ref|NP_224034.1| DNA transfer protein [Helicobacter pylori J99]
Length = 304
Score = 22.7 bits (47), Expect = 5.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 133 FTWKRLSDEEIKNLKLKRFNL 153
FT+K + E +KNL LK N+
Sbjct: 121 FTFKVSNPESLKNLALKGHNI 141
>ref|NP_224148.1| putative [Helicobacter pylori J99]
Length = 282
Score = 22.3 bits (46), Expect = 6.9
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 46 YAYGISDVDGSKARKDKLNPNPKLRNRSDKGVVFLSDLIK 85
+ Y + + S+A K+K N N L+N + L D +K
Sbjct: 143 FVYALEHFNDSQASKNKNNKNNYLKN-----AICLKDYLK 177
>ref|NP_224079.1| BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE [Helicobacter pylori
J99]
Length = 340
Score = 22.3 bits (46), Expect = 6.9
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 81 SDLIKVGKRSYKGGKAYNFYDGKTYYVRVTQNS 113
S ++ G+ ++G KAY GK R +N+
Sbjct: 49 SPVLHYGQACFEGLKAYRSQKGKALLFRPLENA 81
>ref|NP_223809.1| putative [Helicobacter pylori J99]
Length = 386
Score = 22.3 bits (46), Expect = 6.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 144 KNLKLKRFNLDEVLKTIKDSP 164
KNLKL + + LK +KD+P
Sbjct: 191 KNLKLLKEQVKGSLKELKDNP 211
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 22.3 bits (46), Expect = 6.9
Identities = 12/39 (30%), Positives = 16/39 (40%)
Query: 109 VTQNSNGDLEFTSSYDKWGYVGKTFTWKRLSDEEIKNLK 147
+T N+ E T YD Y GK W D + +K
Sbjct: 599 LTHNTYFYKEITLEYDLKRYQGKYSFWIIKKDNNVSKIK 637
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 22.3 bits (46), Expect = 6.9
Identities = 19/68 (27%), Positives = 32/68 (46%), Gaps = 14/68 (20%)
Query: 72 RSDKGVVFLSDLIKVGKRSYKGGKAYNFYDGKTYYVRVTQNSNGDLEFTS--SYDKW--- 126
++D G FLS G +Y GG+ Y+G + + N+ +L +S S+ W
Sbjct: 113 KNDNGTYFLS-----GLYNYTGGE----YNGGNLDIELGSNATFNLGASSGNSFTSWYPN 163
Query: 127 GYVGKTFT 134
G+ TF+
Sbjct: 164 GHTDVTFS 171
>ref|NP_223384.1| putative [Helicobacter pylori J99]
Length = 355
Score = 21.9 bits (45), Expect = 9.1
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 22 IYQTQEFLYMKSSFVEFFEHNGKFY 46
+Y++ E+L M+ +F+ F FY
Sbjct: 167 VYKSNEYLTMQENFMRFVFGKRLFY 191
>ref|NP_223272.1| putative efflux transporter [Helicobacter pylori J99]
Length = 1028
Score = 21.9 bits (45), Expect = 9.1
Identities = 15/75 (20%), Positives = 29/75 (38%)
Query: 44 KFYAYGISDVDGSKARKDKLNPNPKLRNRSDKGVVFLSDLIKVGKRSYKGGKAYNFYDGK 103
K G ++G + R+ ++ +P L N+ + L +K GG+ N
Sbjct: 164 KINGVGGVQLNGFRERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQREL 223
Query: 104 TYYVRVTQNSNGDLE 118
+ + S D+E
Sbjct: 224 SILINANSYSVADVE 238
>ref|NP_222953.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobacter pylori J99]
Length = 491
Score = 21.9 bits (45), Expect = 9.1
Identities = 7/26 (26%), Positives = 17/26 (64%)
Query: 140 DEEIKNLKLKRFNLDEVLKTIKDSPI 165
D EI+ ++ N ++++KT+ D+ +
Sbjct: 377 DSEIELFEIPTINENQIIKTLHDAKV 402
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 21.9 bits (45), Expect = 9.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 28 FLYMKSSFVEFFEHN 42
FL+ K SF E E+N
Sbjct: 531 FLFAKGSFAEILEYN 545
>ref|NP_222904.1| S-adenosylmethionine synthetase [Helicobacter pylori J99]
Length = 385
Score = 21.9 bits (45), Expect = 9.1
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 120 TSSYDKWGYVGKTFTWKRLSD-EEIK 144
TS+Y +G + FTW++ + EEIK
Sbjct: 355 TSAYGHFGRELEEFTWEKTNKVEEIK 380
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.140 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 186,545
Number of Sequences: 1491
Number of extensions: 8986
Number of successful extensions: 33
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 21
length of query: 165
length of database: 494,079
effective HSP length: 71
effective length of query: 94
effective length of database: 388,218
effective search space: 36492492
effective search space used: 36492492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)