BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645643|ref|NP_207819.1| hypothetical protein
[Helicobacter pylori 26695]
(178 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223114.1| putative [Helicobacter pylori J99] 316 2e-88
ref|NP_223177.1| putative Glycolate oxidase [Helicobacter p... 28 0.11
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 25 0.92
ref|NP_224108.1| PEPTIDYL-TRNA HYDROLASE [Helicobacter pylo... 25 1.6
ref|NP_223088.1| putative [Helicobacter pylori J99] 25 1.6
ref|NP_223258.1| putative [Helicobacter pylori J99] 24 2.7
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 23 3.5
ref|NP_223475.1| putative osmoprotection binding protein [H... 23 3.5
ref|NP_222851.1| A/G-SPECIFIC ADENINE GLYCOSYLASE [Helicoba... 23 3.5
ref|NP_223133.1| TYPE I RESTRICTION ENZYME (SPECIFICITY SUB... 23 4.6
ref|NP_223234.1| putative [Helicobacter pylori J99] 23 6.0
ref|NP_222943.1| PORPHOBILINOGEN DEAMINASE [Helicobacter py... 23 6.0
>ref|NP_223114.1| putative [Helicobacter pylori J99]
Length = 178
Score = 316 bits (810), Expect = 2e-88
Identities = 158/178 (88%), Positives = 165/178 (91%)
Query: 1 MAIFGELSSLGHLFKKTQELEILHEYLKEVMQKGSKANQRVLNLATNTEFQVPLGHGIFS 60
MAIFGEL SLGHLFKKTQELEILH YL++VMQKGS+ANQRVLNLA NTEFQVPL HGIFS
Sbjct: 1 MAIFGELGSLGHLFKKTQELEILHGYLQDVMQKGSEANQRVLNLAINTEFQVPLEHGIFS 60
Query: 61 IEQSYCLEHAKESEKGFFESHKKYVDFQLIVKGVEGAKAVGINQAVIKNPYDEKRDLIVY 120
IEQSYCLEHAKE EKGFFESH++YVDFQLI+KGVEGAK IN+AVIK PYDEKRDLIVY
Sbjct: 61 IEQSYCLEHAKEGEKGFFESHRQYVDFQLIIKGVEGAKVADINRAVIKTPYDEKRDLIVY 120
Query: 121 EPVSEASFLRLHAGMLAIFFENDAHALRFYGESFEKYREEPIFKAVVKAPKGLIKLKL 178
EPVSEASFL L AGMLAIF ENDAHALRFYGESFEKYREEPIFKAVVK PKGLIKLKL
Sbjct: 121 EPVSEASFLHLDAGMLAIFLENDAHALRFYGESFEKYREEPIFKAVVKMPKGLIKLKL 178
>ref|NP_223177.1| putative Glycolate oxidase [Helicobacter pylori J99]
Length = 459
Score = 28.5 bits (62), Expect = 0.11
Identities = 20/81 (24%), Positives = 34/81 (41%)
Query: 6 ELSSLGHLFKKTQELEILHEYLKEVMQKGSKANQRVLNLATNTEFQVPLGHGIFSIEQSY 65
++ GH + I+ E K ++KG KA + + A + E + HGI + +
Sbjct: 367 KIPCFGHTGDGNVHVNIMLEDPKRDLEKGHKAMEEIFQAAISLEGTLSGEHGIGLSKAKF 426
Query: 66 CLEHAKESEKGFFESHKKYVD 86
SE F + KK +D
Sbjct: 427 MPLAFNHSEMELFRNIKKALD 447
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 25.4 bits (54), Expect = 0.92
Identities = 23/77 (29%), Positives = 36/77 (45%), Gaps = 5/77 (6%)
Query: 94 VEGAKAVGINQAVIKNPYDEKRDLIVYEPVSEASFLRLHAGMLAIFFENDA--HALRFYG 151
+E A+ V I +A K+P +K D+ P+ L + LAI END LR
Sbjct: 1107 LESAREVKIPKARYKDPEKQKEDVREIPPM---EMLASSSCSLAIVLENDVKKEFLRQIK 1163
Query: 152 ESFEKYREEPIFKAVVK 168
ES K++ + ++K
Sbjct: 1164 ESALKHQGKRPLYLIIK 1180
>ref|NP_224108.1| PEPTIDYL-TRNA HYDROLASE [Helicobacter pylori J99]
Length = 186
Score = 24.6 bits (52), Expect = 1.6
Identities = 19/55 (34%), Positives = 25/55 (44%), Gaps = 10/55 (18%)
Query: 27 LKEVMQKGSKANQRVLNLATNTEFQVPLGHGIFSIEQSYCLEHAKESEKGFFESH 81
L+ + KG + VL+ N E PL + F EHAK + K F ESH
Sbjct: 123 LRVGISKGINITEHVLSKFHNNE--EPLKNAAF--------EHAKNALKFFIESH 167
>ref|NP_223088.1| putative [Helicobacter pylori J99]
Length = 289
Score = 24.6 bits (52), Expect = 1.6
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 75 KGFFESHKKYVDFQLIVKGVEG------AKAVGINQAVIKNPYDEKRDLIVYEPVSEASF 128
KG + + FQ + K G +GIN NPY EK +L+ S +
Sbjct: 92 KGELHEKNESILFQQMAKNKSGFFIGVILGDIGINA----NPY-EKFELLSNIQASPLLY 146
Query: 129 LRLHAGMLAIFFENDAHALRFYGE 152
L +G +F N ALRFYGE
Sbjct: 147 -GLRSGYQK-YFANGISALRFYGE 168
>ref|NP_223258.1| putative [Helicobacter pylori J99]
Length = 591
Score = 23.9 bits (50), Expect = 2.7
Identities = 15/61 (24%), Positives = 27/61 (43%)
Query: 60 SIEQSYCLEHAKESEKGFFESHKKYVDFQLIVKGVEGAKAVGINQAVIKNPYDEKRDLIV 119
S+ QS+ L K + + H+K+ + L+ G AV Q + K + D +V
Sbjct: 221 SVAQSFILGSLCVFYKNYIQKHEKFDYWFLLGAMQAGIAAVAYCQFIYKEIHKRNIDTLV 280
Query: 120 Y 120
+
Sbjct: 281 F 281
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 23.5 bits (49), Expect = 3.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 61 IEQSYCLEHAKESEKGFFESHKKYVDF 87
I + LE AKE+E+GF E+ +++
Sbjct: 91 IAKGRILEPAKENEQGFLEAQISPIEY 117
>ref|NP_223475.1| putative osmoprotection binding protein [Helicobacter pylori J99]
Length = 553
Score = 23.5 bits (49), Expect = 3.5
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 21/84 (25%)
Query: 107 IKNPYDEKRDLIVYEPVSEASFLRLHAGMLAI--------------------FFENDAHA 146
+KNP +K D + E F L G+L F + H+
Sbjct: 355 LKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQKYAIETFSDLAFHS 414
Query: 147 LRF-YGESFEKYREEPIFKAVVKA 169
F +G F+ + E FK ++KA
Sbjct: 415 PNFDFGAEFDFFEREDAFKGLIKA 438
>ref|NP_222851.1| A/G-SPECIFIC ADENINE GLYCOSYLASE [Helicobacter pylori J99]
Length = 328
Score = 23.5 bits (49), Expect = 3.5
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 11/53 (20%)
Query: 12 HLFKKTQELEILHEYLKEVMQKGSKANQRV-----------LNLATNTEFQVP 53
H KK QE+ YL V+Q A +++ NL N EF++P
Sbjct: 214 HTLKKKQEIIQEERYLGVVIQNNQIALEKIEQKLYLGMHHFPNLKENLEFKLP 266
>ref|NP_223133.1| TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT) [Helicobacter
pylori J99]
Length = 409
Score = 23.1 bits (48), Expect = 4.6
Identities = 12/41 (29%), Positives = 21/41 (50%)
Query: 138 IFFENDAHALRFYGESFEKYREEPIFKAVVKAPKGLIKLKL 178
I+FE + L++Y ++ FK V A GL ++K+
Sbjct: 107 IYFEFLYYLLKYYKDNISNIGGGTTFKEVSGATLGLFQVKI 147
>ref|NP_223234.1| putative [Helicobacter pylori J99]
Length = 366
Score = 22.7 bits (47), Expect = 6.0
Identities = 12/31 (38%), Positives = 15/31 (47%)
Query: 71 KESEKGFFESHKKYVDFQLIVKGVEGAKAVG 101
K+ EKGF + D + KG GAK G
Sbjct: 313 KDFEKGFIRAETISYDDFIAYKGEAGAKEKG 343
>ref|NP_222943.1| PORPHOBILINOGEN DEAMINASE [Helicobacter pylori J99]
Length = 306
Score = 22.7 bits (47), Expect = 6.0
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 16 KTQELEILHEYLKEVMQKGSK 36
KT+ +++ E L+E +Q G+K
Sbjct: 277 KTKAFDLVQELLEEFLQSGAK 297
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.138 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 194,479
Number of Sequences: 1491
Number of extensions: 8760
Number of successful extensions: 26
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 12
length of query: 178
length of database: 494,079
effective HSP length: 72
effective length of query: 106
effective length of database: 386,727
effective search space: 40993062
effective search space used: 40993062
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)