BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645647|ref|NP_207823.1| hypothetical protein
[Helicobacter pylori 26695]
(131 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223110.1| putative [Helicobacter pylori J99] 179 3e-47
ref|NP_223674.1| putative [Helicobacter pylori J99] 28 0.066
ref|NP_223000.1| ALIPHATIC AMIDASE [Helicobacter pylori J99] 27 0.25
ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylo... 25 0.73
ref|NP_223535.1| putative [Helicobacter pylori J99] 25 0.95
ref|NP_223440.1| putative [Helicobacter pylori J99] 25 0.95
ref|NP_223190.1| cag island protein [Helicobacter pylori J99] 24 1.2
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 23 2.1
ref|NP_223642.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_223340.1| putative [Helicobacter pylori J99] 23 3.6
ref|NP_223323.1| putative [Helicobacter pylori J99] 23 3.6
ref|NP_224013.1| putative ENDONUCLEASE [Helicobacter pylori... 22 4.7
ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori... 22 4.7
ref|NP_222885.1| putative restriction enzyme [Helicobacter ... 22 6.1
ref|NP_222764.1| putative [Helicobacter pylori J99] 22 6.1
ref|NP_223955.1| 50S RIBOSOMAL PROTEIN L23 [Helicobacter py... 22 8.0
ref|NP_223302.1| putative [Helicobacter pylori J99] 22 8.0
ref|NP_223245.1| putative [Helicobacter pylori J99] 22 8.0
>ref|NP_223110.1| putative [Helicobacter pylori J99]
Length = 91
Score = 179 bits (453), Expect = 3e-47
Identities = 88/91 (96%), Positives = 89/91 (97%)
Query: 1 MYSKILATSFSLFLNSWLKRSKLSSVPFLSKRQISKSVQAIKIDANNNAIKYPPSVDNTV 60
MY KILATSFSLFLNSWLKRSKLSSVPFLSKRQISKSVQAIKIDANN AIKYPPSVDNTV
Sbjct: 1 MYFKILATSFSLFLNSWLKRSKLSSVPFLSKRQISKSVQAIKIDANNKAIKYPPSVDNTV 60
Query: 61 HNKMLSGSLNFNTENTNPKKNPTTTEKWIKF 91
HN+MLSGSLNFNTENTNPKKNPTTTEKWIKF
Sbjct: 61 HNRMLSGSLNFNTENTNPKKNPTTTEKWIKF 91
>ref|NP_223674.1| putative [Helicobacter pylori J99]
Length = 200
Score = 28.5 bits (62), Expect = 0.066
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 39 QAIKIDANNNAIKYPPSVDNTVHNKMLSGSLNFNTENTNPKKNPTTTEKWIKFCTFI 95
+A + N I+ P+++ NK + +L F E+ + KKN KW K ++
Sbjct: 7 RAYRYGEENITIENLPTLEKNFFNKHNNSALEFLKESIHSKKNTEKWYKWGKTLNYL 63
>ref|NP_223000.1| ALIPHATIC AMIDASE [Helicobacter pylori J99]
Length = 339
Score = 26.6 bits (57), Expect = 0.25
Identities = 11/29 (37%), Positives = 18/29 (61%)
Query: 99 PKYFKSLLKKLFKPSFGISKAPVSNLETK 127
PK + ++K +PS G++ PV +L TK
Sbjct: 311 PKKAQENVEKFTRPSVGVAACPVGDLPTK 339
>ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 541
Score = 25.0 bits (53), Expect = 0.73
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 28 FLSKR---QISKSVQAIKIDANNNAIKYPPSVDNTVHNKMLSGSLNFNTENTNPKKNPTT 84
FLSKR + V +K ++N I Y ++ +H + + P KN
Sbjct: 395 FLSKRLDTHLEFDVNTLKKQDSSNPIYYIHYANSRIHTMLEKSPFSKEEILQTPLKNLNA 454
Query: 85 TEKWIKF 91
EK++ F
Sbjct: 455 EEKYLLF 461
>ref|NP_223535.1| putative [Helicobacter pylori J99]
Length = 460
Score = 24.6 bits (52), Expect = 0.95
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 12/74 (16%)
Query: 50 IKYPPSVDNTVHNKMLSGSLNFNTENTNPKKNPTTTEKWIKFCTFIQAYPKYFKSLLKKL 109
+ + P V + + + G L F T+NTN K+ K K K+ K+
Sbjct: 169 LHFYPLVKLGLWDLLFKGLLGFKTKNTNKKEYRLNRAK------------KDLKAFFKQF 216
Query: 110 FKPSFGISKAPVSN 123
F G S A +++
Sbjct: 217 FPSVLGNSSAQIAS 230
>ref|NP_223440.1| putative [Helicobacter pylori J99]
Length = 184
Score = 24.6 bits (52), Expect = 0.95
Identities = 16/46 (34%), Positives = 24/46 (51%), Gaps = 3/46 (6%)
Query: 80 KNPTTTEKWIKFCTFIQAYPKYFKSLLKKLFKP--SFGISKAPVSN 123
KNP T K + +Q++ +FK +LK KP +G+ KA N
Sbjct: 20 KNPLTLSKEEEVLQNLQSFSAHFKQVLKN-EKPLVYYGVLKAKAPN 64
>ref|NP_223190.1| cag island protein [Helicobacter pylori J99]
Length = 169
Score = 24.3 bits (51), Expect = 1.2
Identities = 14/44 (31%), Positives = 21/44 (46%)
Query: 64 MLSGSLNFNTENTNPKKNPTTTEKWIKFCTFIQAYPKYFKSLLK 107
+L SL N + K+ + + I T + YP Y K+LLK
Sbjct: 54 LLESSLGLNNKREKSLKDTSYSMFHITLNTAKKFYPTYSKTLLK 97
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 23.5 bits (49), Expect = 2.1
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 4 KILATSFSLFLNSWLKRSKLSSVPFLSKRQISKSVQAIKIDANNNAIKYPPSVDNTVHNK 63
KIL FSL S LK L+ + L K++ + +ANN+ V N +
Sbjct: 1701 KILGNDFSLSSLSNLKGDALNQLTKLITPSDWKNINELIDNANNSV------VQNFNNGT 1754
Query: 64 MLSGSLNFNTENTN 77
++ G+ +TN
Sbjct: 1755 LIIGATKIGQTDTN 1768
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 23.1 bits (48), Expect = 2.8
Identities = 21/81 (25%), Positives = 35/81 (42%), Gaps = 6/81 (7%)
Query: 52 YPPSVDNTVHNKMLSGSLNFNTENTNPKK-NPTTTEKWIKFCTFIQAYPKYFKSLLKKLF 110
Y PS+DN ++ L + + EN +K NP +K + + S L+K F
Sbjct: 83 YDPSLDNDENSSELLDAFTSSLENLEKQKINPIREQK--RESGWQNNEDNKENSELEKAF 140
Query: 111 KPSFGISKA---PVSNLETKR 128
K S++ P+ ET +
Sbjct: 141 KKDLSFSQSNPIPLDKKETSK 161
>ref|NP_223340.1| putative [Helicobacter pylori J99]
Length = 168
Score = 22.7 bits (47), Expect = 3.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 96 QAYPKYFKSLLKKLFKPSF 114
Q +PK+FK++ K F +F
Sbjct: 90 QGFPKFFKAIFKARFFGAF 108
>ref|NP_223323.1| putative [Helicobacter pylori J99]
Length = 335
Score = 22.7 bits (47), Expect = 3.6
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 14 LNSWLKRSKLSSVPFL----SKRQISKSVQAIK 42
L+ LK +K+SS+ FL SK + S++ +K
Sbjct: 60 LDELLKHAKISSLMFLARAYSKADVEMSIEILK 92
>ref|NP_224013.1| putative ENDONUCLEASE [Helicobacter pylori J99]
Length = 287
Score = 22.3 bits (46), Expect = 4.7
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 10 FSLFLNSWLKRSKLSSVPFLSKRQISKSVQAIKIDANNNAIKYPPSVDNTVHN 62
FSL SWL+ L + +K + IK N+ P N HN
Sbjct: 10 FSLIAMSWLQADMLDNFTKAINSYTAKKLNEIKDQVNS---ANPTKNHNPTHN 59
>ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori J99]
Length = 1288
Score = 22.3 bits (46), Expect = 4.7
Identities = 11/24 (45%), Positives = 13/24 (53%)
Query: 63 KMLSGSLNFNTENTNPKKNPTTTE 86
K +S + N NTE NP N TE
Sbjct: 349 KEISQNNNSNTEVINPPNNTQKTE 372
>ref|NP_222885.1| putative restriction enzyme [Helicobacter pylori J99]
Length = 448
Score = 21.9 bits (45), Expect = 6.1
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 84 TTEKWIKFCTFIQAYPKYFKSLLKKLFKPSFGISKAPVSNLETK 127
T W KFCT I L + FG+ + +L++K
Sbjct: 343 TDMTWQKFCTTINEKIAQNNEGLSSMEDKRFGVYFVSIDDLKSK 386
>ref|NP_222764.1| putative [Helicobacter pylori J99]
Length = 330
Score = 21.9 bits (45), Expect = 6.1
Identities = 8/27 (29%), Positives = 16/27 (58%)
Query: 38 VQAIKIDANNNAIKYPPSVDNTVHNKM 64
++ + N +KYP ++DN V+ K+
Sbjct: 96 LECLDFGFNGWGLKYPSNLDNQVNFKL 122
>ref|NP_223955.1| 50S RIBOSOMAL PROTEIN L23 [Helicobacter pylori J99]
Length = 93
Score = 21.6 bits (44), Expect = 8.0
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 95 IQAYPKYFKSLLKKLFKPSFGISKAPVSNLE 125
+Q K+ LK++FK FG +++L+
Sbjct: 27 VQTAQNVTKNQLKEVFKTYFGFEPLKINSLK 57
>ref|NP_223302.1| putative [Helicobacter pylori J99]
Length = 167
Score = 21.6 bits (44), Expect = 8.0
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 48 NAIKYPPS-----VDNTVHNKMLSGSLNFN 72
NAI++P DN V N+++ L+FN
Sbjct: 5 NAIRWPKKWIPGETDNFVSNEVIVKGLDFN 34
>ref|NP_223245.1| putative [Helicobacter pylori J99]
Length = 372
Score = 21.6 bits (44), Expect = 8.0
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 18 LKRSKLSSVPFLSKRQISKSVQAIKIDANNNAIKYP 53
L+R +L +LSK + S S + +K+ N + YP
Sbjct: 306 LRRKEL----WLSKLENSNSFKTLKVLDKANEVSYP 337
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.129 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,452
Number of Sequences: 1491
Number of extensions: 6012
Number of successful extensions: 28
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 19
length of query: 131
length of database: 494,079
effective HSP length: 68
effective length of query: 63
effective length of database: 392,691
effective search space: 24739533
effective search space used: 24739533
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 44 (21.6 bits)