BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645650|ref|NP_207826.1| 7,
8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (folK) [Helicobacter
pylori 26695]
(163 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223107.1| 7, 8-DIHYDRO-6-HYDROXYMETHYLPTERIN-PYROPHO... 316 2e-88
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 29 0.056
ref|NP_223454.1| MOLYBDOPTERIN CONVERTING FACTOR, SUBUNIT 2... 26 0.47
ref|NP_222909.1| BETA-KETOACYL-ACP SYNTHASE III [Helicobact... 25 0.80
ref|NP_222923.1| putative [Helicobacter pylori J99] 25 1.0
ref|NP_223265.1| putative secretion/efflux abc transporter,... 24 2.3
ref|NP_222912.1| putative [Helicobacter pylori J99] 24 2.3
ref|NP_223891.1| putative [Helicobacter pylori J99] 23 3.0
ref|NP_222899.1| Fumarate reductase [Helicobacter pylori J99] 23 5.2
ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN ... 22 6.8
ref|NP_223662.1| putative [Helicobacter pylori J99] 22 6.8
ref|NP_224180.1| putative [Helicobacter pylori J99] 22 8.9
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 22 8.9
>ref|NP_223107.1| 7, 8-DIHYDRO-6-HYDROXYMETHYLPTERIN-PYROPHOSPHOKINASE [Helicobacter
pylori J99]
Length = 163
Score = 316 bits (809), Expect = 2e-88
Identities = 154/163 (94%), Positives = 157/163 (95%)
Query: 1 MMREILTSRFFPSLFKKRLDFSNRVVLGLGSNLKNPLKILKNCFLYFKNHSKIGKIFSSP 60
MMREILT+RFFPSLFKKRLDFSNRVVLGLGSNLKNPLKILK+CFLYFKNHSKIGKIFSSP
Sbjct: 1 MMREILTNRFFPSLFKKRLDFSNRVVLGLGSNLKNPLKILKSCFLYFKNHSKIGKIFSSP 60
Query: 61 IYINPPFGYTKQPNFYNATIILKTSLSLRHFFALVFYIERRFGRQRKRDFKDAPRTLDID 120
IYINPPFGYT QPNFYNATIILKTSL LRHFFALVFYIERRFGR RKRDFKDAPRTLDID
Sbjct: 61 IYINPPFGYTNQPNFYNATIILKTSLGLRHFFALVFYIERRFGRARKRDFKDAPRTLDID 120
Query: 121 IIAFNQVILRQNDLALPHPKWSERDSVLVPLALQQILFKKGEW 163
IIAFNQVILRQNDL LPHPKWSERDSVLVPL LQQILFK+ EW
Sbjct: 121 IIAFNQVILRQNDLTLPHPKWSERDSVLVPLTLQQILFKREEW 163
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 29.3 bits (64), Expect = 0.056
Identities = 14/26 (53%), Positives = 18/26 (68%)
Query: 9 RFFPSLFKKRLDFSNRVVLGLGSNLK 34
RF +L KR+DFS R V+ +G NLK
Sbjct: 1726 RFRQNLLGKRVDFSGRSVIVVGPNLK 1751
>ref|NP_223454.1| MOLYBDOPTERIN CONVERTING FACTOR, SUBUNIT 2 [Helicobacter pylori
J99]
Length = 145
Score = 26.2 bits (56), Expect = 0.47
Identities = 12/31 (38%), Positives = 19/31 (60%)
Query: 29 LGSNLKNPLKILKNCFLYFKNHSKIGKIFSS 59
+G+N KN LK+ + F FK ++ I K + S
Sbjct: 94 MGANTKNALKLYEYFFKNFKRNAPIWKCYLS 124
>ref|NP_222909.1| BETA-KETOACYL-ACP SYNTHASE III [Helicobacter pylori J99]
Length = 331
Score = 25.4 bits (54), Expect = 0.80
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 97 YIERRFGRQRKRDFKDAPRTLDIDIIAFNQVILR 130
+IE+R G + +R D ++ D+ +IA Q I R
Sbjct: 34 WIEKRTGIKERRFANDEEKSSDLGVIAAKQAIER 67
>ref|NP_222923.1| putative [Helicobacter pylori J99]
Length = 368
Score = 25.0 bits (53), Expect = 1.0
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 9/43 (20%)
Query: 110 FKDAPRTLDIDIIAFNQVILRQNDLALPHPKWSERDSVLVPLA 152
F+D P +D+IA QN AL HP WS D + + A
Sbjct: 162 FRDTP----LDLIAIQNA---QN--ALKHPNWSMGDKITIDSA 195
>ref|NP_223265.1| putative secretion/efflux abc transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 589
Score = 23.9 bits (50), Expect = 2.3
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 32 NLKNPLKILKNCFLYFKNHSKIGKIFSSPIYINPPFGYTKQPN--FYNATIILKTSLSLR 89
N KN +L N L F H K I + +Y+N F Q N F +L T+LS+
Sbjct: 216 NQKNKDNLLFNFMLNF--HHKF--IETKELYLNN-FVKVAQKNLIFTIYADVLITTLSIA 270
Query: 90 HFFALVFYI 98
FF +VF I
Sbjct: 271 LFFLMVFII 279
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 23.9 bits (50), Expect = 2.3
Identities = 12/38 (31%), Positives = 21/38 (54%)
Query: 13 SLFKKRLDFSNRVVLGLGSNLKNPLKILKNCFLYFKNH 50
SLF K N++ + L N ++ +K K+ +YF +H
Sbjct: 440 SLFNKTNFNPNKIWIPLEFNKRSKIKFDKDLEIYFDSH 477
>ref|NP_223891.1| putative [Helicobacter pylori J99]
Length = 595
Score = 23.5 bits (49), Expect = 3.0
Identities = 8/22 (36%), Positives = 13/22 (58%)
Query: 45 LYFKNHSKIGKIFSSPIYINPP 66
L+F + + FS+ IY +PP
Sbjct: 337 LFFSQYKRTTSFFSNSIYASPP 358
>ref|NP_222899.1| Fumarate reductase [Helicobacter pylori J99]
Length = 714
Score = 22.7 bits (47), Expect = 5.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 136 LPHPKWSERDSVLVPLALQ 154
+PHPK ERD+ ++ L+
Sbjct: 631 IPHPKKEERDAEILKTILE 649
>ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN [Helicobacter pylori J99]
Length = 457
Score = 22.3 bits (46), Expect = 6.8
Identities = 9/16 (56%), Positives = 12/16 (74%)
Query: 44 FLYFKNHSKIGKIFSS 59
FL K+HS I K++SS
Sbjct: 404 FLDLKDHSSISKMYSS 419
>ref|NP_223662.1| putative [Helicobacter pylori J99]
Length = 668
Score = 22.3 bits (46), Expect = 6.8
Identities = 15/51 (29%), Positives = 24/51 (46%), Gaps = 4/51 (7%)
Query: 30 GSNLKNPLKIL---KNCFLYFKNHSKIGKIFSSPIYINPPFGYTKQPNFYN 77
G N + KIL K + +N ++ K + P+Y N PF +FY+
Sbjct: 130 GENAEEVAKILGVSKEEYQKLENIAQT-KAANDPMYANTPFSNGSDSSFYD 179
>ref|NP_224180.1| putative [Helicobacter pylori J99]
Length = 176
Score = 21.9 bits (45), Expect = 8.9
Identities = 11/32 (34%), Positives = 18/32 (55%), Gaps = 3/32 (9%)
Query: 124 FNQV---ILRQNDLALPHPKWSERDSVLVPLA 152
FNQ+ +L +ND HP + E + +L +A
Sbjct: 95 FNQIKIFLLPENDETKHHPNYCELEPLLEKMA 126
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 21.9 bits (45), Expect = 8.9
Identities = 8/18 (44%), Positives = 13/18 (71%)
Query: 75 FYNATIILKTSLSLRHFF 92
F N +IILK + LR+++
Sbjct: 3046 FKNKSIILKPQIGLRYYY 3063
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.328 0.145 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,688
Number of Sequences: 1491
Number of extensions: 8786
Number of successful extensions: 35
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 13
length of query: 163
length of database: 494,079
effective HSP length: 71
effective length of query: 92
effective length of database: 388,218
effective search space: 35716056
effective search space used: 35716056
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)