BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645652|ref|NP_207828.1| 3-dehydroquinase type II
(aroQ) [Helicobacter pylori 26695]
         (167 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223105.1|  3-DEHYDROQUINATE DEHYDRATASE [Helicobacter...   330  1e-92
ref|NP_223062.1|  multi-drug resistance protein [Helicobacte...    25  0.84
ref|NP_222921.1|  putative transporter [Helicobacter pylori ...    23  5.4
ref|NP_222899.1|  Fumarate reductase [Helicobacter pylori J99]     23  5.4
ref|NP_223491.1|  putative [Helicobacter pylori J99]               22  7.1

>ref|NP_223105.1| 3-DEHYDROQUINATE DEHYDRATASE [Helicobacter pylori J99]
          Length = 170

 Score =  330 bits (846), Expect = 1e-92
 Identities = 167/170 (98%), Positives = 167/170 (98%), Gaps = 3/170 (1%)

Query: 1   MKILVIQGPNLNMLGHRDPRLYGMVTLDQIHEIMQTFVKQGNLDVELEFFQTNFEGEIID 60
           MKILVIQGPNLNMLGHRDPRLYGMVTLDQIHEIMQTFVKQGNLDVELEFFQTNFEGEIID
Sbjct: 1   MKILVIQGPNLNMLGHRDPRLYGMVTLDQIHEIMQTFVKQGNLDVELEFFQTNFEGEIID 60

Query: 61  KIQESVGSDYEGIIINPGAFSHTSIAIADAIMLAGKPVIEVHLTNIQAREEFRKNSYTGA 120
           KIQESVGSDYEGIIINPGAFSHTSIAIADAIMLAGKPVIEVHLTNIQAREEFRKNSYTGA
Sbjct: 61  KIQESVGSDYEGIIINPGAFSHTSIAIADAIMLAGKPVIEVHLTNIQAREEFRKNSYTGA 120

Query: 121 ACGGVIMGFGPLGYNMALMAMVNILAEMKAFQEAQK---NNPNNPINNQK 167
           ACGGVIMGFGPLGYNMALMAMVNILAEMKAFQEAQK   NNPNNPINNQK
Sbjct: 121 ACGGVIMGFGPLGYNMALMAMVNILAEMKAFQEAQKNNPNNPNNPINNQK 170



>ref|NP_223062.1| multi-drug resistance protein [Helicobacter pylori J99]
          Length = 551

 Score = 25.4 bits (54), Expect = 0.84
 Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 7/71 (9%)

Query: 25  VTLDQIHEIMQTFVKQGNLDVELEFFQTNFEGEIIDKIQESVGSDYEGIIINPGAFSHTS 84
           + LD + +I    + +  L +E++FF    +GE+I +I   +G      +I     ++ S
Sbjct: 84  IGLDIVKKIRNAML-ESLLKMEMDFFNRTKKGELIARITNDIG------LIRASLSNYLS 136

Query: 85  IAIADAIMLAG 95
            ++ + + + G
Sbjct: 137 ESLREGLTIVG 147



 Score = 21.9 bits (45), Expect = 9.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 84  SIAIADAIMLAGKPVIEVHLT 104
           SIAIA  I L G  VI+ H++
Sbjct: 252 SIAIALVIYLGGNEVIKGHIS 272



>ref|NP_222921.1| putative transporter [Helicobacter pylori J99]
          Length = 548

 Score = 22.7 bits (47), Expect = 5.4
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 111 EFRKNSYTGAA----CGGVIMGFGPLGYNMALMAMVNILAEMKAFQEAQKNNPN 160
           E   N+ T AA     GGV MG G   +   L+ +   L+   AF       PN
Sbjct: 453 EITSNTATAAAFLPVIGGVAMGMGYESHQSLLLTIPVALSATCAFMLPVATPPN 506



>ref|NP_222899.1| Fumarate reductase [Helicobacter pylori J99]
          Length = 714

 Score = 22.7 bits (47), Expect = 5.4
 Identities = 10/28 (35%), Positives = 14/28 (49%)

Query: 16  HRDPRLYGMVTLDQIHEIMQTFVKQGNL 43
           H D + YG V  D I   +  +V +G L
Sbjct: 186 HHDNKCYGAVVRDLITGEISAYVSKGTL 213



>ref|NP_223491.1| putative [Helicobacter pylori J99]
          Length = 462

 Score = 22.3 bits (46), Expect = 7.1
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 5/26 (19%)

Query: 147 EMKAFQEAQKNNPN-----NPINNQK 167
           ++K F+E  K NPN     N I+N K
Sbjct: 104 DLKLFREVFKTNPNCFLVINKIDNDK 129



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.320    0.138    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,588
Number of Sequences: 1491
Number of extensions: 7157
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 6
length of query: 167
length of database: 494,079
effective HSP length: 71
effective length of query: 96
effective length of database: 388,218
effective search space: 37268928
effective search space used: 37268928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)