BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645654|ref|NP_207830.1| ribosomal protein S15
(rps15) [Helicobacter pylori 26695]
(90 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223103.1| 30S RIBOSOMAL PROTEIN S15 [Helicobacter py... 169 1e-44
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 28 0.043
ref|NP_223652.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_223121.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helic... 23 1.4
ref|NP_222923.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 22 2.4
ref|NP_223433.1| putative [Helicobacter pylori J99] 21 4.0
ref|NP_224000.1| putative histidine kinase sensor protein [... 21 5.2
ref|NP_223507.1| putative abc transporter, ATP-binding prot... 21 5.2
ref|NP_223389.1| putative [Helicobacter pylori J99] 21 5.2
ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Heli... 20 9.0
ref|NP_223963.1| FUMARASE [Helicobacter pylori J99] 20 9.0
ref|NP_223812.1| putative [Helicobacter pylori J99] 20 9.0
ref|NP_223588.1| putative outer membrane protein [Helicobac... 20 9.0
ref|NP_223401.1| putative [Helicobacter pylori J99] 20 9.0
ref|NP_223382.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 20 9.0
ref|NP_223324.1| RIBONUCLEASE HI [Helicobacter pylori J99] 20 9.0
ref|NP_222779.1| putative [Helicobacter pylori J99] 20 9.0
>ref|NP_223103.1| 30S RIBOSOMAL PROTEIN S15 [Helicobacter pylori J99]
Length = 90
Score = 169 bits (427), Expect = 1e-44
Identities = 86/90 (95%), Positives = 87/90 (96%)
Query: 1 MALNLEKKQEIIKAFATKENDTGSCEVQVALLNERIKLLTEHLKANPKDHSSRLGLLKLV 60
MALNLEKKQEIIKAFATK NDTGSCEVQVALLNERIKLLTEHLK NPKDHSSRLGLLKLV
Sbjct: 1 MALNLEKKQEIIKAFATKANDTGSCEVQVALLNERIKLLTEHLKTNPKDHSSRLGLLKLV 60
Query: 61 AQRRNLLKYIKRTNHARYVVLIEKLGIKDR 90
AQRRNLLKYIKRT+H RYVVLIEKLGIKDR
Sbjct: 61 AQRRNLLKYIKRTDHVRYVVLIEKLGIKDR 90
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 27.7 bits (60), Expect = 0.043
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 6 EKKQEIIKAFATKENDTGSCEVQVALLNERIKLLTEHLKANPKDHSSRLGLLKLVAQRRN 65
E K+ + KA TKENDT EVQ NE E +A PK+ + L + +A N
Sbjct: 517 ETKEAVGKALQTKENDTK--EVQE---NE----TKETKEAQPKE--APTALQEFMANHSN 565
Query: 66 LLKYIKRTNHARYVVLI 82
L++ IK + V L+
Sbjct: 566 LIEEIKSEFEIKSVELL 582
>ref|NP_223652.1| putative [Helicobacter pylori J99]
Length = 180
Score = 23.1 bits (48), Expect = 1.1
Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 34 ERIKLLTEHLKANPKDHSSRLGLLKLVAQRRNLLKYIKRTNHARYVVLIE 83
E+++ L E+L+A +R+ + + +R+ L+++IK N + + L+E
Sbjct: 83 EQLQELNENLRALIV--INRMPTIPTLKERQALIEFIKENNPSDRITLLE 130
>ref|NP_223121.1| putative [Helicobacter pylori J99]
Length = 288
Score = 23.1 bits (48), Expect = 1.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 9 QEIIKAFATKENDTGSCEVQVALLNERI 36
++II+AF KE+ + S + ALLN R+
Sbjct: 224 EQIIQAFKIKEDLSDSEAKEKALLNMRL 251
>ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 681
Score = 22.7 bits (47), Expect = 1.4
Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 7 KKQEIIKAFATKENDTGSCEVQVALLNERIKLLTEHLKANP 47
++ ++K++ ++N E + + E + L+ EH K NP
Sbjct: 469 EETNLLKSYEKEDN----YEEREGFVKELLSLVKEHFKTNP 505
>ref|NP_222923.1| putative [Helicobacter pylori J99]
Length = 368
Score = 22.3 bits (46), Expect = 1.8
Identities = 12/29 (41%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Query: 10 EIIKAFATKENDTGSCEVQVALLNERIKL 38
+I K F K + SC +AL+NE+IK+
Sbjct: 16 KIAKKFGVKI-EALSCGKNIALINEQIKV 43
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 21.9 bits (45), Expect = 2.4
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 40 TEHLKANPKDHSSRLGLLKLVAQRRNLLKYIKRTNHARYVVLIEKL 85
TEH+ KD +S LG+L + N ++ + + + + KL
Sbjct: 2834 TEHIVTLMKDITSALGMLSNSNLKNNSTDVLQLNTYTQQMSRLAKL 2879
>ref|NP_223433.1| putative [Helicobacter pylori J99]
Length = 227
Score = 21.2 bits (43), Expect = 4.0
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 25 CEVQVALLNERIKLLTEHLKANPKDHSSRLGLLKLVAQRRNLLKYIKR 72
C Q +R+ L +H K + + LK +R+++L Y+++
Sbjct: 149 CYYQNKDFYKRLSLAFKHQKTKIPHYILKEAALKTNLKRQDILNYLQK 196
>ref|NP_224000.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 344
Score = 20.8 bits (42), Expect = 5.2
Identities = 21/78 (26%), Positives = 32/78 (40%), Gaps = 5/78 (6%)
Query: 12 IKAFATKENDTGSCEVQVALLNERIKLLTEHLKANPKDHSSRLGLLKLVAQRRNLLKYIK 71
+KA TKEN S + L + L+ LKA +D S L + N +KY
Sbjct: 204 LKALITKENTLFSEMIDYHKLEFKSDLVGVVLKAKEQDFISLYSNLLM-----NAIKYSV 258
Query: 72 RTNHARYVVLIEKLGIKD 89
+ + E L +K+
Sbjct: 259 MHGYIHIELTPEFLKVKN 276
>ref|NP_223507.1| putative abc transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 533
Score = 20.8 bits (42), Expect = 5.2
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 11 IIKAFATKENDTGSCEVQVALLNERIKLLTEHLKANPKDHSSRLG 55
I K T N+ CE +++I L LK PKD + +G
Sbjct: 310 IFKPKRTIGNEALECENISKSYDDQIVLNQVSLKVMPKDKIALIG 354
>ref|NP_223389.1| putative [Helicobacter pylori J99]
Length = 439
Score = 20.8 bits (42), Expect = 5.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 30 ALLNERIKLLTEH 42
ALLN+ IK L EH
Sbjct: 369 ALLNKPIKALVEH 381
>ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
Length = 1001
Score = 20.0 bits (40), Expect = 9.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 76 ARYVVLIEKLGIKDR 90
ARYVV + + +KDR
Sbjct: 414 ARYVVQSDSVPVKDR 428
>ref|NP_223963.1| FUMARASE [Helicobacter pylori J99]
Length = 463
Score = 20.0 bits (40), Expect = 9.0
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 3 LNLEKKQEIIKA 14
L+LEK Q IIKA
Sbjct: 64 LSLEKSQAIIKA 75
>ref|NP_223812.1| putative [Helicobacter pylori J99]
Length = 687
Score = 20.0 bits (40), Expect = 9.0
Identities = 12/42 (28%), Positives = 21/42 (49%)
Query: 43 LKANPKDHSSRLGLLKLVAQRRNLLKYIKRTNHARYVVLIEK 84
LK PK + S L + VAQ + + + I T + + ++K
Sbjct: 594 LKVMPKSNDSVLNNVSHVAQMQIIKEKIALTTDEKALKTLQK 635
>ref|NP_223588.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 20.0 bits (40), Expect = 9.0
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 13 KAFATKENDTGSCEVQVALLNERIKLLTEHLKANPKDHSS 52
+A +T +DT + V L N + L+ ++ NP + ++
Sbjct: 163 EATSTSISDTNTQRVFETLNNIKTNLIMKYSNENPNNFNT 202
>ref|NP_223401.1| putative [Helicobacter pylori J99]
Length = 419
Score = 20.0 bits (40), Expect = 9.0
Identities = 9/22 (40%), Positives = 13/22 (58%)
Query: 63 RRNLLKYIKRTNHARYVVLIEK 84
R + K+I +T + YV IEK
Sbjct: 274 RNDKYKFIAQTTNTSYVDKIEK 295
>ref|NP_223382.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 328
Score = 20.0 bits (40), Expect = 9.0
Identities = 10/42 (23%), Positives = 21/42 (49%)
Query: 49 DHSSRLGLLKLVAQRRNLLKYIKRTNHARYVVLIEKLGIKDR 90
+H + GLLK + +LK I+ + + + +LG + +
Sbjct: 105 NHGNGSGLLKDLNHLVEILKVIRENTNKKITSVKVRLGFEKK 146
>ref|NP_223324.1| RIBONUCLEASE HI [Helicobacter pylori J99]
Length = 143
Score = 20.0 bits (40), Expect = 9.0
Identities = 9/27 (33%), Positives = 16/27 (58%)
Query: 13 KAFATKENDTGSCEVQVALLNERIKLL 39
K + EN T + +++ LNE +K+L
Sbjct: 32 KTISGGENFTTNNRMELRALNEALKIL 58
>ref|NP_222779.1| putative [Helicobacter pylori J99]
Length = 86
Score = 20.0 bits (40), Expect = 9.0
Identities = 8/18 (44%), Positives = 13/18 (71%)
Query: 24 SCEVQVALLNERIKLLTE 41
+ + Q+A L ERI++L E
Sbjct: 67 AAQEQIAWLKERIRVLEE 84
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.135 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,640
Number of Sequences: 1491
Number of extensions: 3473
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of query: 90
length of database: 494,079
effective HSP length: 66
effective length of query: 24
effective length of database: 395,673
effective search space: 9496152
effective search space used: 9496152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 40 (20.0 bits)