BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644735|ref|NP_206905.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(155 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222818.1| putative [Helicobacter pylori J99] 304 8e-85
ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99] 27 0.20
ref|NP_223846.1| ELONGATION FACTOR TU (EF-TU) [Helicobacter... 25 0.74
ref|NP_224161.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 25 0.97
ref|NP_224001.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 25 0.97
ref|NP_224054.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_223228.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_223191.1| cag island protein, DNA transfer protein [... 23 4.8
ref|NP_224197.1| putative Outer membrane protein [Helicobac... 22 6.3
ref|NP_223972.1| putative TRNA (5-METHYLAMINOMETHYL-2-THIOU... 22 6.3
ref|NP_223919.1| ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE [He... 22 6.3
ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori... 22 6.3
>ref|NP_222818.1| putative [Helicobacter pylori J99]
Length = 152
Score = 304 bits (778), Expect = 8e-85
Identities = 145/151 (96%), Positives = 150/151 (99%)
Query: 5 KMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLV 64
KMNVESFNLDHTKVKAPYVR+ADRKKGVNGDLIVKYDVRFKQPN+DHMDMPSLHSLEHLV
Sbjct: 2 KMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNRDHMDMPSLHSLEHLV 61
Query: 65 AEIIRNHASYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQ 124
AEIIRNHA+YVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKA EVPASNEKQ
Sbjct: 62 AEIIRNHANYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQ 121
Query: 125 CGWAANHTLEGAKDLARAFLDKRAEWSEVGV 155
CGWAANHTLEGA++LARAFLDKRAEWSEVGV
Sbjct: 122 CGWAANHTLEGAQNLARAFLDKRAEWSEVGV 152
>ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99]
Length = 686
Score = 27.3 bits (59), Expect = 0.20
Identities = 18/65 (27%), Positives = 32/65 (48%), Gaps = 8/65 (12%)
Query: 16 TKVKAPYVRVADRKKGV-----NGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRN 70
T VK Y+ ++ KK + G +V+ F+ Q +D+ +E ++ EI+ N
Sbjct: 494 TLVKREYISISQDKKHIITPTHKGKRVVEV---FENAYQFIIDLTYTKQMEEVLDEIVEN 550
Query: 71 HASYV 75
+SYV
Sbjct: 551 KSSYV 555
>ref|NP_223846.1| ELONGATION FACTOR TU (EF-TU) [Helicobacter pylori J99]
Length = 399
Score = 25.4 bits (54), Expect = 0.74
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 99 EILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAK 137
E+LE++E ++++L A E P + +A LE AK
Sbjct: 145 ELLELVEMEVRELLSAYEFPGDDTPIVAGSALRALEEAK 183
>ref|NP_224161.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 213
Score = 25.0 bits (53), Expect = 0.97
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 5 KMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSL 60
+++VE FNL V+ P + + K + D ++ V F QD+ + + +L
Sbjct: 41 RLSVERFNLLLLDVQVPEMNSLELFKRIKNDFLISTPVIFITALQDNATLKNAFNL 96
>ref|NP_224001.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 213
Score = 25.0 bits (53), Expect = 0.97
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 5 KMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSL 60
+++VE FNL V+ P + + K + D ++ V F QD+ + + +L
Sbjct: 41 RLSVERFNLLLLDVQVPEMNSLELFKRIKNDFLISTPVIFITALQDNATLKNAFNL 96
>ref|NP_224054.1| putative [Helicobacter pylori J99]
Length = 274
Score = 23.5 bits (49), Expect = 2.8
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
Query: 71 HASYVVDW-----------SPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLK-ATEVP 118
H + + DW S +G T F+++ N T EV+E ++ L+ E+
Sbjct: 119 HLNQMFDWRLSLKELYTMGSLVGADTNFFISQYKSANATSYGEVIENFEEESLEDRLEIY 178
Query: 119 ASNEKQCGWAA 129
A N C A
Sbjct: 179 APNHVFCSTKA 189
>ref|NP_223228.1| putative [Helicobacter pylori J99]
Length = 416
Score = 23.5 bits (49), Expect = 2.8
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 73 SYVVDWSPMGCQTGFYLTVLNHDNYT 98
SY DW+ GF + +++H+ T
Sbjct: 20 SYAFDWNIFKYNLGFNMFIMDHEGST 45
>ref|NP_223191.1| cag island protein, DNA transfer protein [Helicobacter pylori J99]
Length = 748
Score = 22.7 bits (47), Expect = 4.8
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
Query: 69 RNHASYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEK-----TMQDVLKATE 116
RN A ++D + G +N+DNY E E L K T QDV ++ +
Sbjct: 595 RNGAKTILDNLSLNMYYG-----INNDNYYEHFEKLSKVLGKYTRQDVSRSID 642
>ref|NP_224197.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 314
Score = 22.3 bits (46), Expect = 6.3
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 5 KMNVESFNLDHTKVKAPYVRVADRKKGVNG 34
K +SFN +++K+ +V + +K V+G
Sbjct: 215 KQYEQSFNANYSKILHKEFKVGESEKSVSG 244
>ref|NP_223972.1| putative TRNA
(5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
[Helicobacter pylori J99]
Length = 360
Score = 22.3 bits (46), Expect = 6.3
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 81 MGCQ---TGFYLTVLNHDNYTEILEVLEKT 107
+GC+ TG Y V D + I E L+KT
Sbjct: 126 LGCEKIATGHYARVKEIDKVSYIQEALDKT 155
>ref|NP_223919.1| ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 335
Score = 22.3 bits (46), Expect = 6.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 10 SFNLDHTKVKAPYVRV 25
S L+H K KAPY +
Sbjct: 311 SMTLEHLKTKAPYAHL 326
>ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori J99]
Length = 1288
Score = 22.3 bits (46), Expect = 6.3
Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 20/95 (21%)
Query: 12 NLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQ-----PNQDHMDMPSLHSLEHLVAE 66
N +H +KA + + G NG V + +FK+ N + MD
Sbjct: 724 NTEHVLLKAKIIGYGNVSTGTNGISNVNLEEQFKERLALYNNNNRMD-----------TC 772
Query: 67 IIRNHASYVVDWSPMGCQTGFYLTVLNHDNYTEIL 101
++RN D G G V N DNY ++
Sbjct: 773 VVRN----TDDIKACGMAIGNQSMVNNPDNYKYLI 803
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.132 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,515
Number of Sequences: 1491
Number of extensions: 6025
Number of successful extensions: 23
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 12
length of query: 155
length of database: 494,079
effective HSP length: 70
effective length of query: 85
effective length of database: 389,709
effective search space: 33125265
effective search space used: 33125265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)