BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645659|ref|NP_207835.1| acetyl-CoA synthetase
(acoE) [Helicobacter pylori 26695]
(662 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 29 0.33
ref|NP_223516.1| putative [Helicobacter pylori J99] 26 3.7
ref|NP_223761.1| putative [Helicobacter pylori J99] 25 4.8
ref|NP_223273.1| putative [Helicobacter pylori J99] 25 8.2
ref|NP_222763.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 25 8.2
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 29.3 bits (64), Expect = 0.33
Identities = 52/222 (23%), Positives = 94/222 (41%), Gaps = 44/222 (19%)
Query: 3 LDEDLEFAKKIFNPNRAFAKQARIKNMCEYKDLVHEANEDYEHFWGDLAKQKLTWFKPFD 62
L+ + FA K+FN A ++K +KD E +Y+ G AK +L
Sbjct: 575 LENNKNFANKLFNA----ASYLKLKQE-SFKD--KERLNEYQTALGRYAKSRLNLVTK-- 625
Query: 63 KVLNSDNAPFFKWFENGKINVSYNCIDRHLKDKKNKVAIIFEGEMGDYNVITYRKLHSE- 121
+V N+ +N + N + + R L GE D+ I + K+ +E
Sbjct: 626 EVRNA--------LDNYRFNDATTLLYRFLW-----------GEFCDW-FIEFSKVENEA 665
Query: 122 VNKTANLLKNEFNVKKGDRVIIYMPMIVESVYMMLACTRIGAIHSIVFAGFSPEALRDRI 181
+++ ++LK + +MP I ES+Y L+ T + HSI+ + E +D
Sbjct: 666 IDELGSVLKEALKLLHP-----FMPFISESLYHKLSNTELENAHSIMVMPYPKEIAQDEK 720
Query: 182 NDAQAKLVITADGTFRKGK------PYMLKPA---LDKALEN 214
+ + +++ + R+ K P +LK A L + +EN
Sbjct: 721 LEHEFEVIKDCIVSLRRLKIMLETPPIVLKEASVGLREKIEN 762
>ref|NP_223516.1| putative [Helicobacter pylori J99]
Length = 218
Score = 25.8 bits (55), Expect = 3.7
Identities = 9/24 (37%), Positives = 19/24 (78%)
Query: 630 KSIAKKEPITQDLSTLEDVNVVKE 653
K++ +K PI +++S L++VN++ E
Sbjct: 137 KNLLEKSPILKEMSALQEVNLLYE 160
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 25.4 bits (54), Expect = 4.8
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 74 KWFENGKINVSYNCIDRHLKDKKNKVAIIFEGEMGDYNVITYRKLHSEVNKTANLLKNE 132
K+ ++ + + Y I+ LK+ KN + +E ++ YR+L + N+T L N+
Sbjct: 1048 KYPDDARAVMDYQAINHILKEHKN---LAYE------DIANYRELSKQANETLKLKDNQ 1097
>ref|NP_223273.1| putative [Helicobacter pylori J99]
Length = 189
Score = 24.6 bits (52), Expect = 8.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 483 IWGDEKRYIDSYFSQIKLNGEYVYL 507
+WG + Y ++F + L GE+ YL
Sbjct: 52 LWGAKGGYQFAFFKALALRGEFSYL 76
>ref|NP_222763.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 757
Score = 24.6 bits (52), Expect = 8.2
Identities = 21/68 (30%), Positives = 27/68 (38%), Gaps = 9/68 (13%)
Query: 529 IVNVSGHRIGTAEVESAISKHEMVAECAVVGIPDAIKGE-----GLFAFVVLCDGAKCNL 583
I +S + G A + + ECA D KG+ GL F +LCD
Sbjct: 179 IQGISCKKCGIALNYKRFKNDDALLECA----KDIQKGKIIALKGLGGFALLCDARNFKT 234
Query: 584 GESLELLK 591
E L LLK
Sbjct: 235 IERLRLLK 242
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 674,968
Number of Sequences: 1491
Number of extensions: 30936
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 7
length of query: 662
length of database: 494,079
effective HSP length: 84
effective length of query: 578
effective length of database: 368,835
effective search space: 213186630
effective search space used: 213186630
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)