BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645660|ref|NP_207836.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(146 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223098.1| putative [Helicobacter pylori J99] 278 6e-77
ref|NP_223405.1| putative [Helicobacter pylori J99] 26 0.39
ref|NP_223613.1| GLYCEROL-3-PHOSPHATE DEHYDROGENASE (NAD+) ... 26 0.51
ref|NP_223154.1| putative [Helicobacter pylori J99] 25 0.66
ref|NP_223130.1| putative ZINC PROTEASE [Helicobacter pylor... 25 0.66
ref|NP_224063.1| putative thiophene/furan oxidation protein... 25 0.87
ref|NP_223788.1| putative [Helicobacter pylori J99] 25 0.87
ref|NP_223693.1| putative AMINOTRANSFERASE [Helicobacter py... 25 1.1
ref|NP_223208.1| cag island protein [Helicobacter pylori J99] 25 1.1
ref|NP_223820.1| putative Outer membrane function [Helicoba... 24 1.5
ref|NP_223267.1| ENDONUCLEASE III [Helicobacter pylori J99] 24 1.9
ref|NP_223923.1| putative [Helicobacter pylori J99] 23 2.5
ref|NP_222947.1| putative [Helicobacter pylori J99] 23 2.5
ref|NP_223931.1| RNA POLYMERASE ALPHA SUBUNIT [Helicobacter... 23 4.3
ref|NP_223922.1| putative [Helicobacter pylori J99] 23 4.3
ref|NP_223770.1| putative [Helicobacter pylori J99] 23 4.3
ref|NP_223571.1| CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN [... 23 4.3
ref|NP_223070.1| putative [Helicobacter pylori J99] 22 5.6
ref|NP_222965.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 22 5.6
ref|NP_222869.1| putative [Helicobacter pylori J99] 22 5.6
ref|NP_223627.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT C [Heli... 22 7.4
ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 22 7.4
ref|NP_222744.1| CITRATE SYNTHASE [Helicobacter pylori J99] 22 7.4
ref|NP_224041.1| putative [Helicobacter pylori J99] 22 9.6
ref|NP_223132.1| polyphosphate kinase [Helicobacter pylori ... 22 9.6
>ref|NP_223098.1| putative [Helicobacter pylori J99]
Length = 146
Score = 278 bits (710), Expect = 6e-77
Identities = 142/146 (97%), Positives = 144/146 (98%)
Query: 1 MTKKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60
MTKKIEEKI GVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL
Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60
Query: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLTNKESFQAVLKDANDLSA 120
LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKL NKESFQAVLKDANDLSA
Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLINKESFQAVLKDANDLSA 120
Query: 121 DFELEDHAIKSVEYKDLKKVKTLFEW 146
DFEL++HAIKSVEYKDLKKVKTLFEW
Sbjct: 121 DFELDNHAIKSVEYKDLKKVKTLFEW 146
>ref|NP_223405.1| putative [Helicobacter pylori J99]
Length = 400
Score = 26.2 bits (56), Expect = 0.39
Identities = 25/93 (26%), Positives = 43/93 (45%), Gaps = 21/93 (22%)
Query: 14 ESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVS-------------EIISPL 60
++L LL ++++K+N ++ RVSLK + A L++ Q S + I+PL
Sbjct: 224 QNLNALLKRLNIIKQNRENEERVSLKKSSQA--LEVKQVASSYQNINTTSYNGPKTIAPL 281
Query: 61 LD------VCDFIQDAYILEVSSMGLERTLKTP 87
D +I Y L++ S + KTP
Sbjct: 282 NDYEVVQKFGPYIDPVYNLKIFSESITLVSKTP 314
>ref|NP_223613.1| GLYCEROL-3-PHOSPHATE DEHYDROGENASE (NAD+) [Helicobacter pylori J99]
Length = 312
Score = 25.8 bits (55), Expect = 0.51
Identities = 20/61 (32%), Positives = 27/61 (43%), Gaps = 7/61 (11%)
Query: 93 SLGEKVEVKLTNKESFQAVLKDANDL-----SADFELED--HAIKSVEYKDLKKVKTLFE 145
+ GEK EVK+ ++ LK ND SA E D +K+ Y V+ L E
Sbjct: 18 AFGEKNEVKIISRRDLNEPLKKLNDALISKGSAPIEQVDLERGLKAALYVIAISVQHLRE 77
Query: 146 W 146
W
Sbjct: 78 W 78
>ref|NP_223154.1| putative [Helicobacter pylori J99]
Length = 184
Score = 25.4 bits (54), Expect = 0.66
Identities = 14/53 (26%), Positives = 26/53 (48%), Gaps = 5/53 (9%)
Query: 96 EKVEVKLTNKESFQAVLKDANDLSADFELEDHAIKSVE-----YKDLKKVKTL 143
+K +K ++F+++ ADF L+DH + V+ D+K+ K L
Sbjct: 60 QKETIKFFGGDNFESIESFKRSPKADFLLDDHLLLEVQSGFQGINDIKEHKVL 112
>ref|NP_223130.1| putative ZINC PROTEASE [Helicobacter pylori J99]
Length = 443
Score = 25.4 bits (54), Expect = 0.66
Identities = 12/45 (26%), Positives = 23/45 (50%)
Query: 9 IGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQV 53
+G + + YL S+ +N V+ V L+N G + +D+ +V
Sbjct: 20 LGASMHAQSYLPKHESVTLKNGLQVVSVPLENKTGVIEVDVLYKV 64
>ref|NP_224063.1| putative thiophene/furan oxidation protein [Helicobacter pylori
J99]
Length = 461
Score = 25.0 bits (53), Expect = 0.87
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 74 EVSSMGLERTLKTPKHFKLSLGEKVEVKLTNKESFQ------------AVLKDANDLSAD 121
E+ +G+E++LK+ ++ + LG K KE F V+ + NDL+
Sbjct: 288 EIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLMDTLNRTKKPCIVVLNKNDLAPK 347
Query: 122 FELE 125
ELE
Sbjct: 348 LELE 351
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 25.0 bits (53), Expect = 0.87
Identities = 30/146 (20%), Positives = 61/146 (41%), Gaps = 15/146 (10%)
Query: 14 ESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLDVCDFIQDAYIL 73
++ G + Y+ KE ++ + LK+ + D+ VSE + ++ + ++
Sbjct: 255 QNCGKIYYESKRTKEFQKAWVE-KLKSDMREIGADVGVIVSEALPKEMERMGLFEGVWVC 313
Query: 74 EVSSM-GLERTLKT-------PKHFKLSLGEKVEVK---LTNKE---SFQAVLKDANDLS 119
GL L+ K + + G+KV + LT+ E A+++ L
Sbjct: 314 SFEEFKGLSAVLREGVIQVSLAKKSQENKGDKVNLLYHYLTSSEFSMQVNAIIEGFEQLR 373
Query: 120 ADFELEDHAIKSVEYKDLKKVKTLFE 145
AD E E A+ + K+++ +FE
Sbjct: 374 ADLESEKRAMARIWKSREKQIEKVFE 399
>ref|NP_223693.1| putative AMINOTRANSFERASE [Helicobacter pylori J99]
Length = 440
Score = 24.6 bits (52), Expect = 1.1
Identities = 15/56 (26%), Positives = 27/56 (47%), Gaps = 6/56 (10%)
Query: 20 LYDVSLVKENEQHVLRVSL------KNPNGAVSLDICQQVSEIISPLLDVCDFIQD 69
L +V + NE +L + + K PN VS+ V+ I++PL +V ++
Sbjct: 156 LCEVVRIPLNEHGLLDLEILEQTLKKTPNSLVSVSAASNVTGILTPLKEVSSLCKE 211
>ref|NP_223208.1| cag island protein [Helicobacter pylori J99]
Length = 142
Score = 24.6 bits (52), Expect = 1.1
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 97 KVEVKLTNKESFQAVLKDANDLSADFELEDHAIKSVEYKD 136
K+E+ E A+L D ND + + + +D ++ S + D
Sbjct: 55 KIEIPKETLEQKVAILNDYNDKNVNIKFDDISLGSFQPND 94
>ref|NP_223820.1| putative Outer membrane function [Helicobacter pylori J99]
Length = 643
Score = 24.3 bits (51), Expect = 1.5
Identities = 14/46 (30%), Positives = 24/46 (51%), Gaps = 4/46 (8%)
Query: 82 RTLKTPKHFKL----SLGEKVEVKLTNKESFQAVLKDANDLSADFE 123
+ + P +F L SL + L N +S +LK AN +++DF+
Sbjct: 325 KNITQPNNFNLNSPGSLTALAQSMLKNAQSQTEILKLANQVASDFD 370
>ref|NP_223267.1| ENDONUCLEASE III [Helicobacter pylori J99]
Length = 218
Score = 23.9 bits (50), Expect = 1.9
Identities = 14/42 (33%), Positives = 21/42 (49%), Gaps = 3/42 (7%)
Query: 102 LTNKESFQAVLKDANDLSADFELEDH---AIKSVEYKDLKKV 140
LT F+AVLK +L F LE+ +K + Y + K+
Sbjct: 39 LTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKL 80
>ref|NP_223923.1| putative [Helicobacter pylori J99]
Length = 245
Score = 23.5 bits (49), Expect = 2.5
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 83 TLKTPKHFKLSLGEKVEVKLTNKESFQAVLKD--ANDLSADFELED--HAIKSVEYKDLK 138
TLKT K FKL + V L K +AV ++ A D + ++ D H ++ KD K
Sbjct: 143 TLKTLKSFKLPQVSEESVLLKEKGKPKAVRRELVAKDYAIVLQVGDTLHDFDAIFAKDAK 202
>ref|NP_222947.1| putative [Helicobacter pylori J99]
Length = 131
Score = 23.5 bits (49), Expect = 2.5
Identities = 11/30 (36%), Positives = 18/30 (59%)
Query: 88 KHFKLSLGEKVEVKLTNKESFQAVLKDAND 117
K F L G ++L E+F+AV+KD ++
Sbjct: 16 KAFGLDYGIDKTLELKKDEAFRAVIKDTSN 45
>ref|NP_223931.1| RNA POLYMERASE ALPHA SUBUNIT [Helicobacter pylori J99]
Length = 344
Score = 22.7 bits (47), Expect = 4.3
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 28 ENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLDVCDFIQDAYI 72
EN+ V+ S K P + D+ EI++P + + +DA +
Sbjct: 103 ENQSVVVDYSFKGPMELRARDLNSDHIEIVNPEMPLATINEDAQL 147
>ref|NP_223922.1| putative [Helicobacter pylori J99]
Length = 352
Score = 22.7 bits (47), Expect = 4.3
Identities = 13/41 (31%), Positives = 23/41 (55%)
Query: 99 EVKLTNKESFQAVLKDANDLSADFELEDHAIKSVEYKDLKK 139
++K +KE+ Q V ND DF L A+ ++++ L+K
Sbjct: 8 DLKCKDKENSQKVFVIRNDKLGDFILAIPALIALKHAFLEK 48
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 22.7 bits (47), Expect = 4.3
Identities = 13/39 (33%), Positives = 20/39 (50%)
Query: 104 NKESFQAVLKDANDLSADFELEDHAIKSVEYKDLKKVKT 142
NKE + + K + DL + L A+K E K K +K+
Sbjct: 131 NKEMSELLTKLSQDLVSQIALIQKALKEQEEKAEKPLKS 169
>ref|NP_223571.1| CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN [Helicobacter pylori J99]
Length = 1085
Score = 22.7 bits (47), Expect = 4.3
Identities = 17/102 (16%), Positives = 44/102 (42%), Gaps = 5/102 (4%)
Query: 23 VSLVKENEQHVL---RVSLKNPNGAVSLDICQQVSEIISPLLDVCDFIQDAYILEVSSMG 79
+ + ++ E+ L + +K P ++ + + S I+ + ++ +Y+L M
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPENGMAKSVDEAYS--IANAIGFPIIVRPSYVLGGQHMQ 725
Query: 80 LERTLKTPKHFKLSLGEKVEVKLTNKESFQAVLKDANDLSAD 121
+ ++ +H+ S+ +E+ N L+ A +L D
Sbjct: 726 ILENIEELRHYLESVTHSLEISPKNPLLIDKFLEKAVELDVD 767
>ref|NP_223070.1| putative [Helicobacter pylori J99]
Length = 272
Score = 22.3 bits (46), Expect = 5.6
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 103 TNKESFQAVLKDANDLSADFELEDHAIKSVEYKDLKKVKT----LFEW 146
T E+FQ L A D + D K Y+ + ++KT +F+W
Sbjct: 123 TEHENFQEKLLAAKDTFRLIKANDFKTKIYPYQIILRLKTKHIIVFKW 170
>ref|NP_222965.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 390
Score = 22.3 bits (46), Expect = 5.6
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 15/75 (20%)
Query: 14 ESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLDVCDFIQDAYIL 73
E L L Y L+ +N + + LK S D C L V DF
Sbjct: 230 EKLKELYYQNRLIFKNNRPYEKYYLKE-----SQDNC----------LSVLDFYSRQGTK 274
Query: 74 EVSSMGLERTLKTPK 88
++ +GL+ KTPK
Sbjct: 275 DLEKLGLKGLFKTPK 289
>ref|NP_222869.1| putative [Helicobacter pylori J99]
Length = 305
Score = 22.3 bits (46), Expect = 5.6
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 8 KIGGVIESLGYLLYDVSLVKENEQHVLRV-----SLKNPNG 43
K G SLGYL VK+NE+ L + SLK +G
Sbjct: 202 KDGASCVSLGYLYEAGMDVKQNEEQALNLYKKGCSLKEGSG 242
>ref|NP_223627.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT C [Helicobacter pylori J99]
Length = 93
Score = 21.9 bits (45), Expect = 7.4
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 60 LLDVCDFIQDAYILEVSSMGLERTLKTP 87
L +V F+++ + LE +++ + L TP
Sbjct: 31 LAEVLGFVENIFALETNNLKTDTHLSTP 58
>ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 439
Score = 21.9 bits (45), Expect = 7.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 19 LLYDVSLVKENEQHV 33
LLY++SL+ E HV
Sbjct: 183 LLYEISLIIRGEDHV 197
>ref|NP_222744.1| CITRATE SYNTHASE [Helicobacter pylori J99]
Length = 426
Score = 21.9 bits (45), Expect = 7.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 10 GGVIESLGYLLYDVSLVKENEQHVLRVSLKNPN 42
GG E + L ++ VK ++++ RV KN N
Sbjct: 274 GGANEKVLLQLEEIGDVKNVDKYIARVKDKNDN 306
>ref|NP_224041.1| putative [Helicobacter pylori J99]
Length = 692
Score = 21.6 bits (44), Expect = 9.6
Identities = 7/15 (46%), Positives = 11/15 (72%)
Query: 89 HFKLSLGEKVEVKLT 103
H+K++L K VK+T
Sbjct: 133 HYKMNLNSKASVKIT 147
>ref|NP_223132.1| polyphosphate kinase [Helicobacter pylori J99]
Length = 675
Score = 21.6 bits (44), Expect = 9.6
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 62 DVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLTNKESFQAVLK 113
D+ +S LE PK K + E ++ ++ +K+ +LK
Sbjct: 479 DIIKLFHSLLTSSATSNTLETLFMAPKQIKPKIIELIQNEMNHKQEGYIILK 530
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.135 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,266
Number of Sequences: 1491
Number of extensions: 6679
Number of successful extensions: 30
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 25
length of query: 146
length of database: 494,079
effective HSP length: 70
effective length of query: 76
effective length of database: 389,709
effective search space: 29617884
effective search space used: 29617884
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 44 (21.6 bits)