BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645661|ref|NP_207838.1| ribosome-binding factor A
(rbfA) [Helicobacter pylori 26695]
(111 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223097.1| putative RIBOSOME-BINDING FACTOR A [Helico... 212 2e-57
ref|NP_223267.1| ENDONUCLEASE III [Helicobacter pylori J99] 28 0.047
ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helic... 25 0.68
ref|NP_223490.1| putative [Helicobacter pylori J99] 23 2.0
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 23 2.6
ref|NP_223778.1| ATP synthase F1, subunit gamma [Helicobact... 22 3.4
ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 22 3.4
ref|NP_223183.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 22 4.4
ref|NP_222863.1| ENOLASE [Helicobacter pylori J99] 22 4.4
ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 22 5.8
ref|NP_224153.1| putative [Helicobacter pylori J99] 21 7.5
ref|NP_224105.1| UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE ... 21 7.5
ref|NP_224065.1| putative [Helicobacter pylori J99] 21 7.5
ref|NP_224022.1| putative [Helicobacter pylori J99] 21 9.8
ref|NP_223602.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT B [H... 21 9.8
ref|NP_223445.1| putative HEAVY-METAL CATION-TRANSPORTING P... 21 9.8
ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIF... 21 9.8
ref|NP_223299.1| putative Outer membrane protein [Helicobac... 21 9.8
>ref|NP_223097.1| putative RIBOSOME-BINDING FACTOR A [Helicobacter pylori J99]
Length = 111
Score = 212 bits (539), Expect = 2e-57
Identities = 108/111 (97%), Positives = 109/111 (97%)
Query: 1 MNAHKERLESNLLELLQEALASLNDSELNSLSVTKVECSKGKHHAYVFVLSSDHKILSKL 60
MNAHKERLESNLLELLQEALASLNDSELNSLSVTKVECSKGKHHA VFVLSSDHKILSKL
Sbjct: 1 MNAHKERLESNLLELLQEALASLNDSELNSLSVTKVECSKGKHHALVFVLSSDHKILSKL 60
Query: 61 KKAEGLIRQFVLQASGWFKCPKLSFVSDNSLEKQLRLDAIFNEIAKGKDND 111
KKAEGLIRQFVLQASGWFKCPKLSFV D+SLEKQLRLDAIFNEIAKGKDND
Sbjct: 61 KKAEGLIRQFVLQASGWFKCPKLSFVLDDSLEKQLRLDAIFNEIAKGKDND 111
>ref|NP_223267.1| ENDONUCLEASE III [Helicobacter pylori J99]
Length = 218
Score = 28.5 bits (62), Expect = 0.047
Identities = 15/58 (25%), Positives = 29/58 (49%)
Query: 49 VLSSDHKILSKLKKAEGLIRQFVLQASGWFKCPKLSFVSDNSLEKQLRLDAIFNEIAK 106
VL+ + K + LK E L F+L+ K++++ + L + +R +N+ AK
Sbjct: 38 VLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAK 95
Score = 22.3 bits (46), Expect = 3.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 13 LELLQEALASLNDSELNSLSVTKVECSK 40
LE L+ A ND E+N + +E SK
Sbjct: 52 LENLKNAFILENDDEINLKKIAYIEFSK 79
>ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 681
Score = 24.6 bits (52), Expect = 0.68
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 5 KERLESN----LLELLQEALASLNDSE-LNSLSVTKVECSKGKHHAYVFVL 50
KE ++N LL+ L E+ ++++E +S V SKG +VFV+
Sbjct: 498 KEHFKTNPTHSLLDFLNESALDVHNTENAQKVSCMSVHMSKGLEFKHVFVI 548
>ref|NP_223490.1| putative [Helicobacter pylori J99]
Length = 296
Score = 23.1 bits (48), Expect = 2.0
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 9 ESNLLELLQEALASLNDSELNSLSVTKVECSKGKHHAYVFVLSSDHKILS 58
ES LLE + + ++ + L+++ ++K + KH L S HK +S
Sbjct: 225 ESFLLEKKSDNVYTIENKALDTMEISKCQMVLKKHS--TDKLDSQHKAIS 272
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 22.7 bits (47), Expect = 2.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 6 ERLESNLLELLQEALASLNDSELNSLSVTKVEC 38
E E++ +L + L++LN+ +L LS V+C
Sbjct: 139 EDTEAHQRQLNEGFLSALNNKQLEELSAFIVQC 171
>ref|NP_223778.1| ATP synthase F1, subunit gamma [Helicobacter pylori J99]
Length = 301
Score = 22.3 bits (46), Expect = 3.4
Identities = 11/32 (34%), Positives = 17/32 (52%)
Query: 79 KCPKLSFVSDNSLEKQLRLDAIFNEIAKGKDN 110
K K V+ NS L+LDA+F+++ N
Sbjct: 31 KLRKAEEVARNSRAYALKLDAVFDDVLSKMKN 62
>ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 742
Score = 22.3 bits (46), Expect = 3.4
Identities = 15/56 (26%), Positives = 25/56 (43%), Gaps = 2/56 (3%)
Query: 39 SKGKHHAYVFVLSSDHKILSKLKKAEGLIRQFVLQASGWFKCPKLSFVSDNSLEKQ 94
S G +F+L D SKL + G+ R + A F P + ++DN + +
Sbjct: 99 SVGVEELLIFILEYDDCYASKLLDSFGITRSYFKSALLDFDNP--NDINDNDINNE 152
>ref|NP_223183.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 443
Score = 21.9 bits (45), Expect = 4.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 2 NAHKERLESNLLELLQEALA 21
N HKERL+ + E + E +A
Sbjct: 115 NEHKERLKDKIEEAVVEKIA 134
>ref|NP_222863.1| ENOLASE [Helicobacter pylori J99]
Length = 426
Score = 21.9 bits (45), Expect = 4.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 23 LNDSELNSLSVTKVECSKGKHHAYVFVLS 51
+ +++ ++S T KHHAY V+S
Sbjct: 337 IKPNQIGTISETLETIRLAKHHAYQCVIS 365
>ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 543
Score = 21.6 bits (44), Expect = 5.8
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 88 DNSLEKQLRLDAIFNEIA 105
DN L L+LDAIFN I+
Sbjct: 107 DNDLH--LKLDAIFNRIS 122
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 21.2 bits (43), Expect = 7.5
Identities = 11/30 (36%), Positives = 15/30 (49%)
Query: 1 MNAHKERLESNLLELLQEALASLNDSELNS 30
+NA KERL+ L +L L EL +
Sbjct: 192 LNAQKERLKEKLEKLEDPKTLQLEAKELQT 221
>ref|NP_224105.1| UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE [Helicobacter pylori
J99]
Length = 447
Score = 21.2 bits (43), Expect = 7.5
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 42 KHHAYVFVLSSDHKILSKLKK 62
+HHAY F+ + +++L K+
Sbjct: 10 QHHAYSFLSDNTNEVLENPKE 30
>ref|NP_224065.1| putative [Helicobacter pylori J99]
Length = 303
Score = 21.2 bits (43), Expect = 7.5
Identities = 11/48 (22%), Positives = 24/48 (49%), Gaps = 1/48 (2%)
Query: 1 MNAHKERLESNLLELLQEAL-ASLNDSELNSLSVTKVECSKGKHHAYV 47
++ K R+++ L + + +D ELN++ + E KG ++ V
Sbjct: 70 IHIQKSRVDNKLKSSDSQTINLKTDDLELNNVEIVNQEAQKGIYYTRV 117
>ref|NP_224022.1| putative [Helicobacter pylori J99]
Length = 309
Score = 20.8 bits (42), Expect = 9.8
Identities = 13/42 (30%), Positives = 18/42 (41%)
Query: 41 GKHHAYVFVLSSDHKILSKLKKAEGLIRQFVLQASGWFKCPK 82
GK Y ++L K + A+ RQFV + G K K
Sbjct: 16 GKPTRYYYLLQDFEKDFVASEVAQNRARQFVKEIIGSKKASK 57
>ref|NP_223602.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT B [Helicobacter pylori J99]
Length = 289
Score = 20.8 bits (42), Expect = 9.8
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 73 QASGWFKCPK 82
Q S W KCPK
Sbjct: 24 QPSHWVKCPK 33
>ref|NP_223445.1| putative HEAVY-METAL CATION-TRANSPORTING P-TYPE ATPASE
[Helicobacter pylori J99]
Length = 686
Score = 20.8 bits (42), Expect = 9.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 50 LSSDHKILSKLKKAEGLIRQFVLQASG 76
LSS K+L+ KK + +I Q +L A G
Sbjct: 620 LSSLVKVLAIAKKTKSIIWQNILFALG 646
>ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
Length = 454
Score = 20.8 bits (42), Expect = 9.8
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 98 DAIFNEIAKGKDND 111
DA+F+++ K K ND
Sbjct: 302 DALFHKLKKAKPND 315
>ref|NP_223299.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 307
Score = 20.8 bits (42), Expect = 9.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 60 LKKAEGLIRQFVLQASGWFKCPKLS 84
++K+ GL+ L AS WF L+
Sbjct: 199 IRKSSGLVIGMELGASTWFASNNLT 223
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.131 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,396
Number of Sequences: 1491
Number of extensions: 3863
Number of successful extensions: 21
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 19
length of query: 111
length of database: 494,079
effective HSP length: 66
effective length of query: 45
effective length of database: 395,673
effective search space: 17805285
effective search space used: 17805285
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 42 (20.8 bits)