BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645663|ref|NP_207840.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(89 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223095.1| putative [Helicobacter pylori J99] 170 4e-45
ref|NP_222981.1| putative [Helicobacter pylori J99] 27 0.096
ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Heli... 24 0.62
ref|NP_224061.1| putative Inner membrane protein [Helicobac... 23 0.81
ref|NP_222780.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_224044.1| putative [Helicobacter pylori J99] 22 2.4
ref|NP_223740.1| putative oxidoreductase [Helicobacter pylo... 22 2.4
ref|NP_223560.1| putative [Helicobacter pylori J99] 22 3.1
ref|NP_223380.1| putative Outer membrane protein [Helicobac... 22 3.1
ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 21 5.3
ref|NP_223315.1| PHOSPHOSERINE PHOSPHATASE [Helicobacter py... 21 5.3
ref|NP_223133.1| TYPE I RESTRICTION ENZYME (SPECIFICITY SUB... 21 5.3
ref|NP_224117.1| Sodium/Glutamate Symporter [Helicobacter p... 20 9.0
ref|NP_223645.1| putative [Helicobacter pylori J99] 20 9.0
ref|NP_223263.1| 8-amino-7-oxononanoate synthase [Helicobac... 20 9.0
>ref|NP_223095.1| putative [Helicobacter pylori J99]
Length = 89
Score = 170 bits (431), Expect = 4e-45
Identities = 84/89 (94%), Positives = 85/89 (95%)
Query: 1 MMGFLLRKTEIKIRMCVACRMRQPQKDLLRLKSFENQIMEFDGKGRSFYVCGNCLKNGEK 60
MM LLRKTEIKIRMCVACRMRQPQK LLRLKSFENQI+EFDGKGRSFYVCGNCLKNGEK
Sbjct: 1 MMESLLRKTEIKIRMCVACRMRQPQKGLLRLKSFENQIVEFDGKGRSFYVCGNCLKNGEK 60
Query: 61 KLLKAVSKIKNAPKDTKNIITWIKERSIA 89
KLLKAVSKIKNAPKDTKNII WIKERSIA
Sbjct: 61 KLLKAVSKIKNAPKDTKNIINWIKERSIA 89
>ref|NP_222981.1| putative [Helicobacter pylori J99]
Length = 431
Score = 26.6 bits (57), Expect = 0.096
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 27 DLLR--LKSFENQIMEFDGKGRSFYVCGNCLKNGEKKLLKAVSK--IKNAPK 74
DL+R L N ++ D +Y GNCL+ KK+ +++K I+N P+
Sbjct: 369 DLVRKALALDSNSVLYLDSLAWGYYKLGNCLE--AKKIFSSIAKELIQNEPE 418
>ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
Length = 1001
Score = 23.9 bits (50), Expect = 0.62
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 63 LKAVSKIKNAPKDTKNIITWIKERS 87
+K +S +K P D K T++KE++
Sbjct: 652 IKGISSLKTPPTDRKPSRTFLKEKN 676
>ref|NP_224061.1| putative Inner membrane protein [Helicobacter pylori J99]
Length = 549
Score = 23.5 bits (49), Expect = 0.81
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 24 PQKDLLRLKSFENQIMEFDGKGR 46
PQ+ LL SFE+ +E D GR
Sbjct: 70 PQESLLSTISFEHAKIEIDSLGR 92
>ref|NP_222780.1| putative [Helicobacter pylori J99]
Length = 500
Score = 22.7 bits (47), Expect = 1.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 54 CLKNGEKKLLKAVSKIKNAPKDTKNI 79
C+KN ++ L KIK +P D+ I
Sbjct: 309 CVKNFKEALEGFTEKIKESPNDSNAI 334
>ref|NP_224044.1| putative [Helicobacter pylori J99]
Length = 792
Score = 21.9 bits (45), Expect = 2.4
Identities = 14/53 (26%), Positives = 23/53 (42%), Gaps = 9/53 (16%)
Query: 31 LKSFENQIMEFDGKGRSFYVCGNCLKNGEKKLLKAVSKIKNAPKDTKNIITWI 83
LK ENQ+ +FD F+ K K++ +I + K +I +I
Sbjct: 341 LKMLENQVFQFDFLNDDFF---------SDKTPKSLQEILKDEEKRKKLIIYI 384
>ref|NP_223740.1| putative oxidoreductase [Helicobacter pylori J99]
Length = 250
Score = 21.9 bits (45), Expect = 2.4
Identities = 11/28 (39%), Positives = 16/28 (56%), Gaps = 4/28 (14%)
Query: 63 LKAVSKIKNA----PKDTKNIITWIKER 86
+KA S +N P+D NI+ WI E+
Sbjct: 196 IKAQSVYENTLYLKPQDIANIVLWIYEQ 223
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 21.6 bits (44), Expect = 3.1
Identities = 10/23 (43%), Positives = 15/23 (64%)
Query: 56 KNGEKKLLKAVSKIKNAPKDTKN 78
K+ K L + +SK K APK++ N
Sbjct: 35 KDFSKILNQKISKDKTAPKESPN 57
>ref|NP_223380.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 651
Score = 21.6 bits (44), Expect = 3.1
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 14/56 (25%)
Query: 26 KDLLRLKSFENQIMEFDGKGRSFYVCGNCLKNGEKKLLKAVSKIKNAPKDTKNIIT 81
KD+ LKS + +I+ N K L + +SK+ +TK+IIT
Sbjct: 384 KDVYNLKSNQTEIVT--------------TYNNAKNLSQEISKLPYNQVNTKDIIT 425
>ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 1035
Score = 20.8 bits (42), Expect = 5.3
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 61 KLLKAVSKIKNAPKDTK 77
++L+ ++++ N PKD K
Sbjct: 109 RVLEQLNRVSNLPKDAK 125
>ref|NP_223315.1| PHOSPHOSERINE PHOSPHATASE [Helicobacter pylori J99]
Length = 207
Score = 20.8 bits (42), Expect = 5.3
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 4/21 (19%)
Query: 57 NGE----KKLLKAVSKIKNAP 73
NGE K L+ VSK+KN P
Sbjct: 41 NGETDFHKSLILRVSKLKNMP 61
>ref|NP_223133.1| TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT) [Helicobacter
pylori J99]
Length = 409
Score = 20.8 bits (42), Expect = 5.3
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 54 CLKNGEKKLLKAVSKIKNAPKDTKNIITWIKERSIA 89
CLK+ K++ + N PK+ N I WI + ++
Sbjct: 8 CLKD-LGKIVGGATPPTNNPKNYGNKIAWITPKDLS 42
>ref|NP_224117.1| Sodium/Glutamate Symporter [Helicobacter pylori J99]
Length = 408
Score = 20.0 bits (40), Expect = 9.0
Identities = 8/12 (66%), Positives = 9/12 (74%)
Query: 66 VSKIKNAPKDTK 77
+SK K PKDTK
Sbjct: 187 ISKYKLEPKDTK 198
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 20.0 bits (40), Expect = 9.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 55 LKNGEKKLLKAVSKIKNAPKDTK 77
L N EK + KN P++TK
Sbjct: 1466 LVNAEKNFERQELAYKNNPRETK 1488
>ref|NP_223263.1| 8-amino-7-oxononanoate synthase [Helicobacter pylori J99]
Length = 373
Score = 20.0 bits (40), Expect = 9.0
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 60 KKLLKAVSKIKNAPKDTKNI 79
K LL+ +KN+ +DTK +
Sbjct: 337 KPLLRVSLSLKNSLEDTKEL 356
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.325 0.138 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,370
Number of Sequences: 1491
Number of extensions: 3794
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 89
length of database: 494,079
effective HSP length: 65
effective length of query: 24
effective length of database: 397,164
effective search space: 9531936
effective search space used: 9531936
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 40 (20.0 bits)