BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645665|ref|NP_207842.1| hypothetical protein
[Helicobacter pylori 26695]
(140 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223093.1| putative [Helicobacter pylori J99] 259 2e-71
ref|NP_222886.1| putative [Helicobacter pylori J99] 26 0.48
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 25 0.81
ref|NP_222977.1| putative [Helicobacter pylori J99] 25 0.81
ref|NP_223398.1| putative ROD SHAPE-DETERMINING PROTEIN [He... 25 1.1
ref|NP_223155.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_223710.1| putative [Helicobacter pylori J99] 24 1.4
ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99] 24 1.4
ref|NP_222763.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 24 1.8
ref|NP_224003.1| putative [Helicobacter pylori J99] 23 2.4
ref|NP_224000.1| putative histidine kinase sensor protein [... 23 4.0
ref|NP_223181.1| 50S RIBOSOMAL PROTEIN L9 [Helicobacter pyl... 22 5.3
ref|NP_222979.1| putative [Helicobacter pylori J99] 22 6.9
ref|NP_222961.1| putative [Helicobacter pylori J99] 22 6.9
ref|NP_222919.1| SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE [He... 22 6.9
ref|NP_224017.1| putative ribonuclease N [Helicobacter pylo... 22 9.0
ref|NP_223726.1| DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE [Heli... 22 9.0
ref|NP_222879.1| MOLYBDOPTERIN BIOSYNTHESIS PROTEIN [Helico... 22 9.0
>ref|NP_223093.1| putative [Helicobacter pylori J99]
Length = 165
Score = 259 bits (663), Expect = 2e-71
Identities = 130/148 (87%), Positives = 134/148 (89%), Gaps = 8/148 (5%)
Query: 1 MYQNNFLCASYTSKSKTSEALVEVFSQLFKDFKNPT--------LPAIKGVYYAKGPGSF 52
+YQN+FLC SYTSKSKTSEALV VFSQLF+DFKNPT LPAIKGVYYAKGPGSF
Sbjct: 18 VYQNDFLCNSYTSKSKTSEALVGVFSQLFEDFKNPTIYPTIYPDLPAIKGVYYAKGPGSF 77
Query: 53 TSLKLTHVFLHTLALIHDFELYSTIGFDFNDNTPILAYANKYFVSKEMESLSDFKDLKIA 112
TSLKLTHVFLHTLALIHDFELYST GFDFNDNTPILAYANKYFVSKE ESL+DFKDLKI
Sbjct: 78 TSLKLTHVFLHTLALIHDFELYSTTGFDFNDNTPILAYANKYFVSKERESLTDFKDLKIL 137
Query: 113 PKDFMLPPFLEKDKFTQLNTPFYILPPI 140
PKDFMLP FLEKDKFTQLNTPFYILPPI
Sbjct: 138 PKDFMLPSFLEKDKFTQLNTPFYILPPI 165
>ref|NP_222886.1| putative [Helicobacter pylori J99]
Length = 406
Score = 25.8 bits (55), Expect = 0.48
Identities = 13/42 (30%), Positives = 22/42 (51%)
Query: 52 FTSLKLTHVFLHTLALIHDFELYSTIGFDFNDNTPILAYANK 93
FT +L F+ ++ +D ++ +GFD +DN I A K
Sbjct: 9 FTDNELNDNFVGIRSINNDLQICFPLGFDISDNKNIRADVKK 50
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 25.0 bits (53), Expect = 0.81
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 96 VSKEMESLSDFKDLKIAPKDFMLPPFLEKDKFTQLNTPFYI 136
VS E SL+D+ +L I P+ LEKD F +N+P Y+
Sbjct: 429 VSLEEISLNDY-NLNI-PRYIAAKQELEKDLFALINSPSYL 467
>ref|NP_222977.1| putative [Helicobacter pylori J99]
Length = 327
Score = 25.0 bits (53), Expect = 0.81
Identities = 14/30 (46%), Positives = 16/30 (52%), Gaps = 1/30 (3%)
Query: 93 KYFVSKEMES-LSDFKDLKIAPKDFMLPPF 121
KY V E + L DFK KI DF+ PF
Sbjct: 113 KYCVYVESKDFLKDFKRFKIQDVDFLFSPF 142
>ref|NP_223398.1| putative ROD SHAPE-DETERMINING PROTEIN [Helicobacter pylori J99]
Length = 381
Score = 24.6 bits (52), Expect = 1.1
Identities = 18/67 (26%), Positives = 32/67 (46%), Gaps = 7/67 (10%)
Query: 68 IHDFELYSTIGF-----DFNDNTPILAYANKYFVSKEMESLSD--FKDLKIAPKDFMLPP 120
+HD++ F +++ I+A + F+ K E+ + FK L IA DF+
Sbjct: 199 LHDYQKKRIADFLSEKPNYHVMQSIIAIGSGGFLGKSKEACTQTKFKFLPIATSDFIFAY 258
Query: 121 FLEKDKF 127
F+E+ F
Sbjct: 259 FVERFGF 265
>ref|NP_223155.1| putative [Helicobacter pylori J99]
Length = 314
Score = 24.6 bits (52), Expect = 1.1
Identities = 17/64 (26%), Positives = 27/64 (41%)
Query: 74 YSTIGFDFNDNTPILAYANKYFVSKEMESLSDFKDLKIAPKDFMLPPFLEKDKFTQLNTP 133
YS F F D L A FV KE + ++LK +++L F + K +
Sbjct: 177 YSVHAFKFKDKKEKLLPARWKFVPKEGVKYLNPQELKQKDSNYLLSSFQQHLKNKPIEYQ 236
Query: 134 FYIL 137
Y++
Sbjct: 237 MYLV 240
>ref|NP_223710.1| putative [Helicobacter pylori J99]
Length = 243
Score = 24.3 bits (51), Expect = 1.4
Identities = 12/43 (27%), Positives = 20/43 (45%)
Query: 96 VSKEMESLSDFKDLKIAPKDFMLPPFLEKDKFTQLNTPFYILP 138
+ K E L DF +++ DF+ F E F+ L ++ P
Sbjct: 98 LKKAQEKLKDFNNVRFECMDFLEVKFKEASAFSLLFVLQFVRP 140
>ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99]
Length = 736
Score = 24.3 bits (51), Expect = 1.4
Identities = 34/143 (23%), Positives = 58/143 (39%), Gaps = 22/143 (15%)
Query: 19 EALVEVFSQLFKDFKNPTLPAIKGVYYAKGPG---SFTSLKLTHVFLHTLAL-----IHD 70
EAL E +++ KD+ LP VY +K + +++ T + L AL +
Sbjct: 308 EALEEARAKILKDYGKDYLPPKAKVYSSKNKNAQEAHEAIRPTSIILEPNALKDYLKPEE 367
Query: 71 FELYSTI----------GFDFNDNTPILAYANKYFVSKEMESLSD--FKDLKIAPKDFML 118
+LY+ I F + ++A F + + L D +K L KD +L
Sbjct: 368 LKLYTLIYKRFLASQMQDALFESQSVVVACEKGEFKASGRKLLFDGHYKILGNDDKDKLL 427
Query: 119 PPFLEKD--KFTQLNTPFYILPP 139
P E D K +L + ++ P
Sbjct: 428 PNLKENDPIKLEKLESNAHVTEP 450
>ref|NP_222763.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 757
Score = 23.9 bits (50), Expect = 1.8
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 58 THVFLHTLALIHDFELYSTIGFDFNDNTPIL--AYANKYFVSKEMESL 103
T+ F TL + + Y+T F+ NTP+L + + +F++ +++L
Sbjct: 451 TYDFKPTLLACDEHQNYTTTKMAFDFNTPLLQVQHHHAHFLASVLDAL 498
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 23.5 bits (49), Expect = 2.4
Identities = 10/36 (27%), Positives = 20/36 (54%)
Query: 81 FNDNTPILAYANKYFVSKEMESLSDFKDLKIAPKDF 116
F+DN +L Y + ++ ++ F+D K + K+F
Sbjct: 41 FDDNKELLDYQQQALINAFRVLVAYFRDFKESKKEF 76
>ref|NP_224000.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 344
Score = 22.7 bits (47), Expect = 4.0
Identities = 15/66 (22%), Positives = 25/66 (37%)
Query: 9 ASYTSKSKTSEALVEVFSQLFKDFKNPTLPAIKGVYYAKGPGSFTSLKLTHVFLHTLALI 68
A + SK + + + + L K K + KG YY +F L + + +
Sbjct: 37 ALFDSKKRVLYSNIPESADLIKTHKEGGFFSFKGEYYLFSDETFAHLGVAKMLFKNSKPL 96
Query: 69 HDFELY 74
H LY
Sbjct: 97 HFSSLY 102
>ref|NP_223181.1| 50S RIBOSOMAL PROTEIN L9 [Helicobacter pylori J99]
Length = 149
Score = 22.3 bits (46), Expect = 5.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 2 YQNNFLCASYTSKSKTSEALVEVFSQLFKDFKNPTL 37
Y NNFL A+ +K T+E + + +++ K + L
Sbjct: 25 YGNNFLIANQKAKLATNEVINKYKAEVKKKAEKEAL 60
>ref|NP_222979.1| putative [Helicobacter pylori J99]
Length = 179
Score = 21.9 bits (45), Expect = 6.9
Identities = 7/18 (38%), Positives = 16/18 (88%)
Query: 9 ASYTSKSKTSEALVEVFS 26
A+Y ++ +TSE+L+++F+
Sbjct: 75 ANYRNQKETSESLLKIFN 92
>ref|NP_222961.1| putative [Helicobacter pylori J99]
Length = 142
Score = 21.9 bits (45), Expect = 6.9
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 95 FVSKEMESLSDFKDLKIAPKDFML 118
+ +E E+L+ KDLKI KD++L
Sbjct: 74 YYQQEGENLT--KDLKILEKDYLL 95
>ref|NP_222919.1| SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE [Helicobacter pylori J99]
Length = 388
Score = 21.9 bits (45), Expect = 6.9
Identities = 23/82 (28%), Positives = 32/82 (38%), Gaps = 18/82 (21%)
Query: 37 LPAIKGVYYAKGPGSFTSLKLTHVFLHTLALIHDFELYSTIGFDFNDNTP---ILAYANK 93
LP I GV+ G F KL LH G N+ TP +A+ +
Sbjct: 224 LPLISGVHLDNGDECFDPSKLVITNLHA-------------GLGANNVTPGSVEIAFNAR 270
Query: 94 YFVSKEMESLSDF--KDLKIAP 113
+ + ESL ++ K LK P
Sbjct: 271 HSLKTTQESLKEYLEKVLKDLP 292
>ref|NP_224017.1| putative ribonuclease N [Helicobacter pylori J99]
Length = 292
Score = 21.6 bits (44), Expect = 9.0
Identities = 13/53 (24%), Positives = 24/53 (44%), Gaps = 1/53 (1%)
Query: 16 KTSEALVEVFSQLFKD-FKNPTLPAIKGVYYAKGPGSFTSLKLTHVFLHTLAL 67
K+ + + +F + F+N L + YYA +T L L+ + L +L
Sbjct: 6 KSVRGFLNLLRMIFPERFQNAFLGLSELFYYASSLSFYTILSLSPILLFVFSL 58
>ref|NP_223726.1| DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE [Helicobacter pylori J99]
Length = 188
Score = 21.6 bits (44), Expect = 9.0
Identities = 10/24 (41%), Positives = 12/24 (49%)
Query: 70 DFELYSTIGFDFNDNTPILAYANK 93
+FE Y TI N P YAN+
Sbjct: 127 EFEGYITIEISNTTNLPAKVYANE 150
>ref|NP_222879.1| MOLYBDOPTERIN BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 390
Score = 21.6 bits (44), Expect = 9.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 103 LSDFKDLKIAPKDFML 118
L KD +APKDF +
Sbjct: 111 LESHKDFALAPKDFKI 126
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.139 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,830
Number of Sequences: 1491
Number of extensions: 7921
Number of successful extensions: 37
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 18
length of query: 140
length of database: 494,079
effective HSP length: 69
effective length of query: 71
effective length of database: 391,200
effective search space: 27775200
effective search space used: 27775200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 44 (21.6 bits)