BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645667|ref|NP_207844.1| hypothetical protein
[Helicobacter pylori 26695]
(217 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223091.1| putative [Helicobacter pylori J99] 323 2e-90
ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99] 28 0.25
ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicob... 27 0.55
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 26 0.72
ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pyl... 25 1.2
ref|NP_223619.1| putative [Helicobacter pylori J99] 25 1.6
ref|NP_223338.1| putative LIPOPOLYSACCHARIDE BIOSYNTHESIS P... 25 1.6
ref|NP_223160.1| PUTATIVE POTASSIUM CHANNEL PROTEIN [Helico... 25 1.6
ref|NP_223698.1| LYSIS TOLERANCE PROTEIN [Helicobacter pylo... 24 3.6
ref|NP_223199.1| cag island protein [Helicobacter pylori J99] 24 3.6
ref|NP_222814.1| putative [Helicobacter pylori J99] 24 3.6
ref|NP_223101.1| putative [Helicobacter pylori J99] 23 4.7
ref|NP_223982.1| PHOSPHOGLYCERATE KINASE [Helicobacter pylo... 23 6.1
ref|NP_224179.1| Ubiquinol cytochrome c oxidoreductase, cyt... 23 8.0
ref|NP_223604.1| putative [Helicobacter pylori J99] 23 8.0
ref|NP_223296.1| putative [Helicobacter pylori J99] 23 8.0
ref|NP_223084.1| putative [Helicobacter pylori J99] 23 8.0
>ref|NP_223091.1| putative [Helicobacter pylori J99]
Length = 194
Score = 323 bits (828), Expect = 2e-90
Identities = 171/195 (87%), Positives = 177/195 (90%), Gaps = 1/195 (0%)
Query: 23 MLKTNQKNVHAFEIEKQEPEAVIGFLEKNHALLQYFLIIFKYDIESEVKAVLRKHQLLFL 82
MLKTNQKNVHAFEIEKQEPEAV+ FLEKNHALLQYFLIIFKYDIESEVKAVL KHQLLFL
Sbjct: 1 MLKTNQKNVHAFEIEKQEPEAVMEFLEKNHALLQYFLIIFKYDIESEVKAVLHKHQLLFL 60
Query: 83 ETNRVLNGRHIKTMPLKDETDHPKPNHSKTEPKTTIYERHIRSGEEIYSTNHLIFLGNIH 142
ETNR LNGR+IKT KD + + + EPKTTIYER+IRSGEEIYSTNHLIFLGNIH
Sbjct: 61 ETNRALNGRYIKTTE-KDANLLKQNSPNAIEPKTTIYERNIRSGEEIYSTNHLIFLGNIH 119
Query: 143 NGAKIISEGCVSVYGVCEGAIVCFGECLILKEVKSAQIVFQNKILSLKEVEPLLVNKNIK 202
NGAKIISEG VSVYGVCEGAIVCFGE LILKEVKSAQIVFQNKILSLKEVE LLVNKNIK
Sbjct: 120 NGAKIISEGSVSVYGVCEGAIVCFGEYLILKEVKSAQIVFQNKILSLKEVERLLVNKNIK 179
Query: 203 IITKNDDILDIKEVL 217
IITKNDDILDIKEVL
Sbjct: 180 IITKNDDILDIKEVL 194
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
Length = 578
Score = 27.7 bits (60), Expect = 0.25
Identities = 22/64 (34%), Positives = 32/64 (49%), Gaps = 6/64 (9%)
Query: 14 QTAFNERIVMLKTNQKNVHAFEIEKQEPEAVIGFLEKNHALLQYFLIIFKYDIESEVKAV 73
+T E I+ L N K +I K+ +A LEK+ LL Y L + + D+ E K
Sbjct: 174 KTLSEEEILALLHNPKR----KIRKKSQKAFSKSLEKSRPLLTYILNMVRKDLLIETK-- 227
Query: 74 LRKH 77
LRK+
Sbjct: 228 LRKY 231
>ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 701
Score = 26.6 bits (57), Expect = 0.55
Identities = 19/53 (35%), Positives = 28/53 (51%), Gaps = 3/53 (5%)
Query: 36 IEKQEPEAVIGFLEKNHALLQYFLIIFKYDIESEVKAVLRKHQLLFLETNRVL 88
IE P+A LEKNH +L K I E+K + +KH ++ +E +R L
Sbjct: 204 IEVDSPKAYFEVLEKNHVILDPKKREAK--ILQEIKGLEKKHDII-VEVDRDL 253
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 26.2 bits (56), Expect = 0.72
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 59 LIIFKY-------DIESEVKAVLRKHQLLFLETNRVLNGRHIKTMPLKDETDHPKPNHSK 111
LII KY D+ ++ ++RK L +LE N GR K+ KD+ + N +
Sbjct: 542 LIIEKYTREAGVRDLRRQIATIMRKAALKYLEDNPHKKGRTKKSED-KDKKGGNEENEKR 600
Query: 112 TEPK 115
E K
Sbjct: 601 GESK 604
>ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pylori J99]
Length = 552
Score = 25.4 bits (54), Expect = 1.2
Identities = 10/35 (28%), Positives = 21/35 (59%)
Query: 181 VFQNKILSLKEVEPLLVNKNIKIITKNDDILDIKE 215
V Q K++S+K+ + I ++ KN+D+ +K+
Sbjct: 459 VIQGKVVSIKDFGVFIHADGIDVLIKNEDLNPLKK 493
>ref|NP_223619.1| putative [Helicobacter pylori J99]
Length = 166
Score = 25.0 bits (53), Expect = 1.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 18 NERIVMLKTNQKNVHAFEIEKQEPEAV 44
NERI +N + +FE+ +Q EA+
Sbjct: 64 NERIEAFSSNDEKTESFELNEQSFEAI 90
>ref|NP_223338.1| putative LIPOPOLYSACCHARIDE BIOSYNTHESIS PROTEIN [Helicobacter
pylori J99]
Length = 315
Score = 25.0 bits (53), Expect = 1.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 36 IEKQEPEAVIGFLEKNHALLQYFLII 61
I ++EP+ V G L HA +++F I
Sbjct: 206 INREEPDCVCGILFLEHAKIRWFFSI 231
>ref|NP_223160.1| PUTATIVE POTASSIUM CHANNEL PROTEIN [Helicobacter pylori J99]
Length = 378
Score = 25.0 bits (53), Expect = 1.6
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 172 LKEVKSAQIVFQNKIL----SLKEVEPLLVNKNIKIITKNDDILDIKEVL 217
LK++ + +V K++ S V P + N + I K D +LD++EV+
Sbjct: 248 LKKLGADMVVSPTKLMAQRVSAMAVRPDMENILERFINKKDTLLDLEEVI 297
>ref|NP_223698.1| LYSIS TOLERANCE PROTEIN [Helicobacter pylori J99]
Length = 274
Score = 23.9 bits (50), Expect = 3.6
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 165 CFG--ECLILKEVKSAQIVFQNKILSLKEVEPLLVNKNIKI------ITKNDDIL 211
CFG + + E ++F + I + KE+ L N N+KI I KN ++
Sbjct: 12 CFGVKRAIQIAEKNQNSLIFGSLIHNAKEINRLEKNFNVKIEEDPKKIPKNKSVI 66
>ref|NP_223199.1| cag island protein [Helicobacter pylori J99]
Length = 280
Score = 23.9 bits (50), Expect = 3.6
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 23 MLKTNQKNVHAFEIEKQEPEAVIGFLEKNHALL----QYFLIIFKYDIESEVKAVLRKHQ 78
ML N KN+H +++ + VI + + A L QY+ + + D E E + +Q
Sbjct: 160 MLGANTKNLHGYDVSGANNKQVINEVAREKAQLEKINQYYKTLLQ-DKEQEY-TTRKNNQ 217
Query: 79 LLFLET 84
LET
Sbjct: 218 REILET 223
>ref|NP_222814.1| putative [Helicobacter pylori J99]
Length = 253
Score = 23.9 bits (50), Expect = 3.6
Identities = 10/28 (35%), Positives = 15/28 (52%)
Query: 80 LFLETNRVLNGRHIKTMPLKDETDHPKP 107
LFLE + + ++ K+E D PKP
Sbjct: 16 LFLEAKEITWSQFLENFKNKNEDDKPKP 43
>ref|NP_223101.1| putative [Helicobacter pylori J99]
Length = 347
Score = 23.5 bits (49), Expect = 4.7
Identities = 15/54 (27%), Positives = 24/54 (43%), Gaps = 1/54 (1%)
Query: 118 IYERHIRSGEEIYSTNHLIFLGNIHNGAKIISEGCVSVYGVCEGAIVCFGECLI 171
+ + HI SG+E+ + H FL KI+ E Y + E + E L+
Sbjct: 92 LLDHHI-SGKEVAESFHWYFLDTNRCATKIVYEFLKKYYAILESKNTLWLEPLV 144
>ref|NP_223982.1| PHOSPHOGLYCERATE KINASE [Helicobacter pylori J99]
Length = 402
Score = 23.1 bits (48), Expect = 6.1
Identities = 15/48 (31%), Positives = 26/48 (53%), Gaps = 3/48 (6%)
Query: 53 ALLQYFLIIFKYDIESEVKAVLRKHQLLFLETNRVLNGRHIKTMPLKD 100
AL+ L + + E +VK L + + T+ +LN +HIK P++D
Sbjct: 249 ALINDALELLQSAKEKKVKVYL---PIDAVTTDDILNPKHIKISPVQD 293
>ref|NP_224179.1| Ubiquinol cytochrome c oxidoreductase, cytochrome c1 subunit
[Helicobacter pylori J99]
Length = 285
Score = 22.7 bits (47), Expect = 8.0
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 109 HSKTEPKTTIYERHIRSGEEIYSTNHLIFLGNIHNGAKIISEGCVSVYGV 158
HS PK + + E I N G+ + G ++++E C + +G+
Sbjct: 26 HSVMHPKVAPADFAFKDLEPIDLKN-----GDANKGKQLVAENCTACHGI 70
>ref|NP_223604.1| putative [Helicobacter pylori J99]
Length = 218
Score = 22.7 bits (47), Expect = 8.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 14 QTAFNERIVMLKTNQKNVHA 33
QT FN IV L N+K+ +A
Sbjct: 50 QTLFNSNIVELDDNKKSANA 69
>ref|NP_223296.1| putative [Helicobacter pylori J99]
Length = 512
Score = 22.7 bits (47), Expect = 8.0
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 71 KAVLRKHQLLFLETNRVLNGRHIKTMPLKDETD 103
+A+ + + L T + H+ T+P KDE +
Sbjct: 261 EALFKTPKRLITPTKNFVLENHLSTLPFKDELE 293
>ref|NP_223084.1| putative [Helicobacter pylori J99]
Length = 160
Score = 22.7 bits (47), Expect = 8.0
Identities = 18/52 (34%), Positives = 25/52 (47%), Gaps = 5/52 (9%)
Query: 171 ILKEVKSAQIVFQNKILSLK-----EVEPLLVNKNIKIITKNDDILDIKEVL 217
I KE Q +F+NK+ SLK E+E V +I + D + D K L
Sbjct: 59 IKKETLEYQKLFENKVESLKGVKIEELEDAKVTAENEIKSIQDLMQDYKRSL 110
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.138 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 241,067
Number of Sequences: 1491
Number of extensions: 10817
Number of successful extensions: 46
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 17
length of query: 217
length of database: 494,079
effective HSP length: 74
effective length of query: 143
effective length of database: 383,745
effective search space: 54875535
effective search space used: 54875535
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)