BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645668|ref|NP_207845.1| hypothetical protein
[Helicobacter pylori 26695]
(422 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223090.1| putative [Helicobacter pylori J99] 755 0.0
ref|NP_223217.1| putative [Helicobacter pylori J99] 30 0.12
ref|NP_223767.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 29 0.20
ref|NP_223076.1| putative RIBOSOMAL PROTEIN L11 METHYLTRANS... 29 0.20
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 29 0.26
ref|NP_222774.1| putative [Helicobacter pylori J99] 29 0.26
ref|NP_223312.1| ASPARTATE AMMONIA-LYASE [Helicobacter pylo... 27 0.76
ref|NP_222882.1| putative PEPTIDYL-PROLYL CIS-TRANS ISOMERA... 27 0.76
ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylo... 27 0.99
ref|NP_223320.1| putative PROCESSING PROTEASE [Helicobacter... 27 0.99
ref|NP_223101.1| putative [Helicobacter pylori J99] 27 0.99
ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 27 1.3
ref|NP_223820.1| putative Outer membrane function [Helicoba... 25 3.8
ref|NP_223243.1| putative [Helicobacter pylori J99] 25 3.8
ref|NP_222808.1| putative [Helicobacter pylori J99] 25 3.8
ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pyl... 24 6.4
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 24 6.4
ref|NP_223353.1| short-chain fatty acids transporter [Helic... 24 6.4
ref|NP_223138.1| putative [Helicobacter pylori J99] 24 6.4
ref|NP_222775.1| putative [Helicobacter pylori J99] 24 6.4
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 24 8.4
ref|NP_223991.1| NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [H... 24 8.4
ref|NP_222903.1| UDP-3-O-[3-hydroxymyristoyl [Helicobacter ... 24 8.4
>ref|NP_223090.1| putative [Helicobacter pylori J99]
Length = 440
Score = 755 bits (1949), Expect = 0.0
Identities = 377/422 (89%), Positives = 397/422 (93%)
Query: 1 MIFNALITKPRALSFSLNSKEGALNDNDGTLFWDLKKPIKIKIVAPKGIKRYDLKVTTQD 60
+IFNA ITKPRALSFSL S+E ALNDN+ LFWDLKKPIK+KIVAPKGIKRY++KVTT+D
Sbjct: 19 LIFNAFITKPRALSFSLKSEENALNDNNEALFWDLKKPIKVKIVAPKGIKRYEIKVTTKD 78
Query: 61 NLILYEKENLVLDKPKSLEVPLTRPEIMGLEDKCLLYEIKANDWSYANFFNGNKASFKQE 120
NLILYEKE+LVLDKPKSLEVPL RPEIMGLE KCL YE +A+DWSYANFFNGNKASFKQE
Sbjct: 79 NLILYEKESLVLDKPKSLEVPLIRPEIMGLEGKCLDYEFQASDWSYANFFNGNKASFKQE 138
Query: 121 VCVDTIKPSITILSRSPSIAYGGSAIVVFEALDKNLSQAFVRVKKKDFEAFRLLEFKQRN 180
VC+DTIKPSI ILSRSPSIAYGGSAIV+FEALDKNLSQAFVRVKKKDF+AFRLLEFKQRN
Sbjct: 139 VCIDTIKPSIVILSRSPSIAYGGSAIVIFEALDKNLSQAFVRVKKKDFKAFRLLEFKQRN 198
Query: 181 VFIALVPWSYKNKDFKAFIVAKDKAYNFNTAPLLFKRKIHRLREKDIDLSALKDKIAKQE 240
VFIALVPWSY+NKDFKAFIVAKDKAYN NT PLLFKRK HRLRE+DI+LSALKDKIAKQE
Sbjct: 199 VFIALVPWSYENKDFKAFIVAKDKAYNSNTTPLLFKRKTHRLRERDINLSALKDKIAKQE 258
Query: 241 KFQNDTEQALLERFSNARPKDLEKIQKIALEQGDFYKDFSHFQALKPLNGPFKMASNFLE 300
KFQN TEQ LLE FSNAR KDLEKIQKIALEQGDF KDFSHFQALKPLNGPFKM SNFLE
Sbjct: 259 KFQNHTEQTLLEMFSNARLKDLEKIQKIALEQGDFDKDFSHFQALKPLNGPFKMTSNFLE 318
Query: 301 NRRILKNNQVLFKFLHLGVDLIPGKDLSLAFDLSVKRVFKGEFDFYGNSLIHCYGLGLCV 360
NRR LK+NQVLFKFLHLGVDL+P KDLSLAFD SVKRVFKGE DFYGNSLI+CYGLGLCV
Sbjct: 319 NRRFLKDNQVLFKFLHLGVDLMPSKDLSLAFDPSVKRVFKGELDFYGNSLINCYGLGLCV 378
Query: 361 FLAHLKDDKSVGSSGLKLGSGLHLGMLLQGVFVRPNEWLNEQWIKTNITAPIEQAKRLLM 420
FLAHLKDD+SVGSSGLKLG GLHLGMLLQGVFVRPNEWLNEQWIKTNI APIEQAKRLLM
Sbjct: 379 FLAHLKDDESVGSSGLKLGIGLHLGMLLQGVFVRPNEWLNEQWIKTNIIAPIEQAKRLLM 438
Query: 421 KG 422
KG
Sbjct: 439 KG 440
>ref|NP_223217.1| putative [Helicobacter pylori J99]
Length = 289
Score = 30.0 bits (66), Expect = 0.12
Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 4/137 (2%)
Query: 99 IKANDWSYANFFNGNKASFKQEVCVDTIKPSITILSRS--PSIAYGGSAIVVFEALDKNL 156
I A + F + N F ++ I ++S + PS++ G ++V + AL NL
Sbjct: 57 IAAKKREFIAFHSHNDQEFLNQIEPSFFDKEIAVMSDAGMPSLSDPGMSLVAY-ALKHNL 115
Query: 157 SQAFVRVKKKDFEAFRLLEFKQRNVFIA-LVPWSYKNKDFKAFIVAKDKAYNFNTAPLLF 215
+ AF F + F A +P K + + + AY P++F
Sbjct: 116 QYDVLPGANALTTAFCASGFLEGRFFYAGFLPHKSKERRLRIIKILNALAYLEEKTPVVF 175
Query: 216 KRKIHRLREKDIDLSAL 232
HRL E DL+ L
Sbjct: 176 YESPHRLLETLRDLNDL 192
>ref|NP_223767.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 321
Score = 29.3 bits (64), Expect = 0.20
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 3 FNALITKPRALSFSLNSKEGALNDNDGTLFWDLKKPIKIK 42
F+ L++ +FS+N K L D GT+ + L + +K+K
Sbjct: 65 FDVLVSGFPCQAFSINGKRKGLEDERGTIIYGLIRILKVK 104
>ref|NP_223076.1| putative RIBOSOMAL PROTEIN L11 METHYLTRANSFERASE [Helicobacter
pylori J99]
Length = 329
Score = 29.3 bits (64), Expect = 0.20
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 12/107 (11%)
Query: 240 EKFQNDTEQALLERFSNARPKDLEKIQKIALEQGDFYKDFSHFQALKPLNGPFKMASNFL 299
E F DT LE S K + + I ++ F+ LK N
Sbjct: 21 ESFLLDTTHLALEESSLENLKAFDDKETIEFVSQSSWRYFATHDPLK---------ENLK 71
Query: 300 ENRRILKNNQVLFKFLHLGVDLIPGKDLSLAFDLSVKRVFKGEFDFY 346
E LKN +L +L L P + AF L++K+ + EFDF+
Sbjct: 72 EKPPHLKNFVILRSEKNLSDSLFPALE---AFCLNLKQSLQSEFDFF 115
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 28.9 bits (63), Expect = 0.26
Identities = 22/90 (24%), Positives = 38/90 (41%), Gaps = 14/90 (15%)
Query: 36 KKPIKIKIVAPKGIKRYD-----LKVTTQDNLILYEKEN---------LVLDKPKSLEVP 81
KKP +++ P D +K N +L +KE L+ + S + P
Sbjct: 344 KKPRVVEVPIPPKTSDSDETMRVIKEKENYNGLLVDKETTIKRSYKGTLISENSYSKKTP 403
Query: 82 LTRPEIMGLEDKCLLYEIKANDWSYANFFN 111
+ ++ LE++ Y +K+N YAN N
Sbjct: 404 INLEDLRSLEEEIKSYYVKSNGLCYANGIN 433
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 28.9 bits (63), Expect = 0.26
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 232 LKDKIAKQEKFQN---DTEQALLERFSNARPKDLEKIQKIALEQGDFYKDFSHFQALKPL 288
L DK+ + E Q +T L + N+ + + +KIA+E+ + ++ + LK L
Sbjct: 214 LTDKLKQLESAQKSLENTNNQLRQALENSNVQLAQAKEKIAIEKSELEREIAR---LKSL 270
Query: 289 NGPFKMASNFLENRRILKNNQVL 311
G + L NRR+ N+ L
Sbjct: 271 EGMEAKSDLDLHNRRLASANEDL 293
>ref|NP_223312.1| ASPARTATE AMMONIA-LYASE [Helicobacter pylori J99]
Length = 468
Score = 27.3 bits (59), Expect = 0.76
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 119 QEVCVDTIKPSITILSR-SPSIAYGGSAIVVFEALDKNLSQAFVRVKKKDFEAFRLLE-F 176
+++C D + SI I++ +P I Y SA++ EAL + S + ++KK +L + F
Sbjct: 393 EKICHDYVFNSIGIVTALNPHIGYEKSAMIAKEALKSDRSIYDIALEKKILTKEQLDDIF 452
Query: 177 KQRNVFIALVPWSYK 191
K N+ L P ++K
Sbjct: 453 KPENM---LSPHAFK 464
>ref|NP_222882.1| putative PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Helicobacter pylori
J99]
Length = 299
Score = 27.3 bits (59), Expect = 0.76
Identities = 28/89 (31%), Positives = 42/89 (46%), Gaps = 12/89 (13%)
Query: 198 FIVAKDKAYNFNTAPLLFKRKIHRLREKDIDLSALKDKIAKQEKFQNDTE---------- 247
F + K + NF+ L K K L E+ I +AL + AK EK E
Sbjct: 58 FDMIKQRNPNFDFDKLKEKEK-EALIEQAIR-TALVENEAKAEKLNQTPEFKAMMEAVKK 115
Query: 248 QALLERFSNARPKDLEKIQKIALEQGDFY 276
QAL+E ++ + ++++KIQ E DFY
Sbjct: 116 QALVEFWAKKQAEEVKKIQIPEKEMQDFY 144
>ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 946
Score = 26.9 bits (58), Expect = 0.99
Identities = 35/138 (25%), Positives = 57/138 (40%), Gaps = 22/138 (15%)
Query: 4 NALITKPRALSFSLNSKEGALNDNDGTLFWDLKKPIKIKIV---------------APKG 48
NAL ++++ +K+ N+ + +F L KI IV A K
Sbjct: 760 NALCCGKAFINYTALTKQN--NEKNHAIFLQLSDEGKIPIVLDHSACSTHFIKQMKAYKD 817
Query: 49 IKRYDLKVTTQDNLILYEK-----ENLVLDKPKSLEVPLTRPEIMGLEDKCLLYEIKAND 103
+K YDL V ++ L K E++ L +L++ ++ L KC L EI +
Sbjct: 818 LKVYDLSVYIEEVLSPKLKFNPINEDIGLYTMCALKLENKEELLLNLAKKCTLGEIVIHK 877
Query: 104 WSYANFFNGNKASFKQEV 121
+ F GNK F E+
Sbjct: 878 ETGCCGFAGNKGFFTPEL 895
Score = 25.4 bits (54), Expect = 2.9
Identities = 21/68 (30%), Positives = 33/68 (47%), Gaps = 5/68 (7%)
Query: 204 KAYNFNTAPLLFKRKIHRLREKDIDLSALKDKIAKQEKFQNDTEQALLERFSNARPKDLE 263
K Y + T LLF + + + L+ALK AKQ + + E L++ S K+LE
Sbjct: 264 KDYAYKTCALLFYENLEQCAKAAQILAALK---AKQPEMISSAE--LMDYASLKSVKNLE 318
Query: 264 KIQKIALE 271
+ + LE
Sbjct: 319 GMPSVVLE 326
>ref|NP_223320.1| putative PROCESSING PROTEASE [Helicobacter pylori J99]
Length = 435
Score = 26.9 bits (58), Expect = 0.99
Identities = 44/163 (26%), Positives = 65/163 (38%), Gaps = 38/163 (23%)
Query: 204 KAYNF--NTAPLLFKRKIHRLREKDIDLSALKDKIAKQEKFQNDTEQALLERFSNARPKD 261
K+ NF N + R + +L +K+ D L KQE F N +NA
Sbjct: 130 KSPNFTQNALEKVKTRMLAQLLQKESDFDYLAKLTLKQELFANTP-------LANAALGT 182
Query: 262 LEKIQKIALE--QGDFYKDFSHFQALKPLNGPFKM---------ASNFLENRRIL----- 305
E +QKI L+ + F K F + + L G K+ A NFL +
Sbjct: 183 KESLQKIKLDDLKQQFAKVFELNKLVVVLGGDLKVNQTLNRLNNALNFLPQGKAYEEPYF 242
Query: 306 -----KNNQVLFK-----FLHLGVDLIPGKDLSLAFDLSVKRV 338
K+ +VL+K F++ GV P K L DL+ +V
Sbjct: 243 EASDKKSEKVLYKDTEQAFVYFGV---PFKIKDLKQDLAKSKV 282
>ref|NP_223101.1| putative [Helicobacter pylori J99]
Length = 347
Score = 26.9 bits (58), Expect = 0.99
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 191 KNKDFKAFIVAKDKAYNFNTAPLLF-KRKIHRLREKDIDLSALKDKIAKQE 240
++K+ + I+ D N N A L K + HRL+ KDI + L I+ +E
Sbjct: 51 QSKESEFLILVSDLNLNLNEAEYLQDKIQEHRLQNKDIQIQLLDHHISGKE 101
>ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 363
Score = 26.6 bits (57), Expect = 1.3
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 68 ENLVLDKPKSLEVPLTRPEIMGLEDKCLLYEIKANDWSYANFFNGNKASFK----QEVCV 123
ENL SL+ E+ L ++ +I D S ANF NK SF +++
Sbjct: 104 ENLNKGMDDSLKANNALREVSALNSVSMIGKIAETDVSGANFDGNNKLSFSLFFDEKIDA 163
Query: 124 DTIKPSITILSRS 136
P+I IL+ +
Sbjct: 164 SKGVPAIQILNEN 176
>ref|NP_223820.1| putative Outer membrane function [Helicobacter pylori J99]
Length = 643
Score = 25.0 bits (53), Expect = 3.8
Identities = 19/74 (25%), Positives = 33/74 (43%), Gaps = 8/74 (10%)
Query: 345 FYGNSLIHCYGLGLCVFLAHLKDDKS--VGSSGLKLGSGLHLGMLLQGVFVRPNEWLNEQ 402
F +S + YG+G + + D + +G + K+ GL G+ L G WLN Q
Sbjct: 505 FNSSSDVLTYGVGSDLLFNFINDKNTNFLGKNN-KISVGLFGGIALAGT-----SWLNSQ 558
Query: 403 WIKTNITAPIEQAK 416
++ + + AK
Sbjct: 559 FVNLKTISNVYSAK 572
>ref|NP_223243.1| putative [Helicobacter pylori J99]
Length = 678
Score = 25.0 bits (53), Expect = 3.8
Identities = 16/52 (30%), Positives = 25/52 (47%), Gaps = 3/52 (5%)
Query: 234 DKIAKQEKFQNDTEQALLERFSNARPKDLEKIQKIALEQGDFYKDFSHFQAL 285
+ IA ++ F N + L R+ N PK+ E Q +E FY+ +AL
Sbjct: 617 EAIATKDYFYNPS---LGLRYLNESPKEPEDKQNDKIEASKFYQQLESLKAL 665
>ref|NP_222808.1| putative [Helicobacter pylori J99]
Length = 176
Score = 25.0 bits (53), Expect = 3.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 218 KIHRLREKDIDLSALKDKIAKQEKFQ 243
KI L +DI L AL D++ K++K+Q
Sbjct: 103 KISDLLIQDIQLYALVDEMLKEDKYQ 128
>ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pylori J99]
Length = 552
Score = 24.3 bits (51), Expect = 6.4
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 16 SLNSKEGALNDNDGTLFWDLKKPIKIKIVAPKGIKRYDLKVTTQDNLILYEKENLV 71
+L +G L+++D FWD K K IK LK+ +D I ++LV
Sbjct: 390 NLGGVDGLLHNHDA--FWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAKHLV 443
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 24.3 bits (51), Expect = 6.4
Identities = 10/51 (19%), Positives = 21/51 (40%)
Query: 11 RALSFSLNSKEGALNDNDGTLFWDLKKPIKIKIVAPKGIKRYDLKVTTQDN 61
+ L + + + +DN+ W P+ + + IK DL + +N
Sbjct: 1094 KILFYGMKIQNATYSDNNNIQTWSFINPLNSSQIIQESIKNGDLTIEVLNN 1144
>ref|NP_223353.1| short-chain fatty acids transporter [Helicobacter pylori J99]
Length = 454
Score = 24.3 bits (51), Expect = 6.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 293 KMASNFLENRRILKNNQVLFKFLHLGVDLIPGKDLSL 329
K ++FLEN +L V F +LG+ G +SL
Sbjct: 243 KTIAHFLENSALLSYLLVFLGFGYLGIYFFKGGGISL 279
>ref|NP_223138.1| putative [Helicobacter pylori J99]
Length = 495
Score = 24.3 bits (51), Expect = 6.4
Identities = 15/54 (27%), Positives = 26/54 (47%), Gaps = 4/54 (7%)
Query: 264 KIQKIALEQ----GDFYKDFSHFQALKPLNGPFKMASNFLENRRILKNNQVLFK 313
KI +IA+ + D FS L PL+ + + ++ + +LKN + FK
Sbjct: 55 KINQIAVFEDAKVSDLVAFFSKEWVLDPLSKRYALKDLMIDEKEVLKNYEDFFK 108
>ref|NP_222775.1| putative [Helicobacter pylori J99]
Length = 143
Score = 24.3 bits (51), Expect = 6.4
Identities = 19/54 (35%), Positives = 26/54 (47%), Gaps = 4/54 (7%)
Query: 74 KPKSLEVPLTRPEIMGLEDKCLLYEIKANDWSYANF----FNGNKASFKQEVCV 123
K KSLE+PL P + L + L + N+ S NF +K FKQ + V
Sbjct: 3 KEKSLELPLGHPLVEKLCELSLNNKAAFNEKSEPNFKDEVSEEDKIKFKQALRV 56
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 23.9 bits (50), Expect = 8.4
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 289 NGPFKMASNFLENRRILKNNQVLFKFLHLGVDLIPGKDLSLAFDLSVKRV 338
N K N+ +++ L + FKFLHL KD+ D S R+
Sbjct: 384 NSVLKKHENYQKDKASLPLLEYFFKFLHLYKFTTTPKDIKDNTDTSESRL 433
>ref|NP_223991.1| NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [Helicobacter pylori J99]
Length = 273
Score = 23.9 bits (50), Expect = 8.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 160 FVRVKKKDFEAFRLLEFKQRNVF 182
F RV +KDF+A + KQ VF
Sbjct: 21 FERVLEKDFKATAFVRAKQEGVF 43
>ref|NP_222903.1| UDP-3-O-[3-hydroxymyristoyl [Helicobacter pylori J99]
Length = 336
Score = 23.9 bits (50), Expect = 8.4
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 229 LSALKDKIAKQEKFQNDTEQALLERFSNARPKDLEKIQKI 268
LS L + + +F ND E L A P D+ I ++
Sbjct: 3 LSELLSAYSIETEFSNDFEVHALAELDKATPNDISYIDQV 42
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.140 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,964
Number of Sequences: 1491
Number of extensions: 25494
Number of successful extensions: 102
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 25
length of query: 422
length of database: 494,079
effective HSP length: 80
effective length of query: 342
effective length of database: 374,799
effective search space: 128181258
effective search space used: 128181258
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)