BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645677|ref|NP_207854.1| glucose-inhibited division
protein (gidB) [Helicobacter pylori 26695]
(178 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223081.1| GLUCOSE INHIBITED DIVISION PROTEIN B [Heli... 339 2e-95
ref|NP_224115.1| putative [Helicobacter pylori J99] 37 3e-04
ref|NP_224153.1| putative [Helicobacter pylori J99] 33 0.004
ref|NP_223717.1| PROTOPORPHYRINOGEN OXIDASE [Helicobacter p... 32 0.010
ref|NP_223659.1| putative [Helicobacter pylori J99] 31 0.017
ref|NP_223999.1| putative [Helicobacter pylori J99] 28 0.14
ref|NP_223475.1| putative osmoprotection binding protein [H... 28 0.19
ref|NP_223803.1| putative cAMP-induced cell filamentation p... 26 0.70
ref|NP_223761.1| putative [Helicobacter pylori J99] 25 0.92
ref|NP_224126.1| putative [Helicobacter pylori J99] 24 2.0
ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99] 24 2.7
ref|NP_223434.1| ACONITATE HYDRATASE [Helicobacter pylori J99] 24 2.7
ref|NP_223387.1| putative [Helicobacter pylori J99] 24 2.7
ref|NP_223264.1| methyl-accepting chemotaxis protein (MCP) ... 24 2.7
ref|NP_223997.1| DNA transfer protein [Helicobacter pylori ... 23 3.5
ref|NP_223260.1| putative [Helicobacter pylori J99] 23 3.5
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 23 4.6
ref|NP_223730.1| putative [Helicobacter pylori J99] 23 4.6
ref|NP_223249.1| putative FLAGELLAR MOTOR SWITCH PROTEIN [... 23 4.6
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 23 6.0
ref|NP_223788.1| putative [Helicobacter pylori J99] 22 7.8
ref|NP_222809.1| putative keto-acid dehydrogenase [Helicoba... 22 7.8
ref|NP_222780.1| putative [Helicobacter pylori J99] 22 7.8
>ref|NP_223081.1| GLUCOSE INHIBITED DIVISION PROTEIN B [Helicobacter pylori J99]
Length = 178
Score = 339 bits (870), Expect = 2e-95
Identities = 169/178 (94%), Positives = 174/178 (96%)
Query: 1 MNPLLQDYARILLEWNQTHNLSGAKNLSELEPQITDALKPLEFIKDFKSCLDIGSGAGLP 60
MNPLLQDYARILLEWNQTHNLSGA+NLSELEPQITDALKPLEF+KDFKSCLDIGSGAGLP
Sbjct: 1 MNPLLQDYARILLEWNQTHNLSGARNLSELEPQITDALKPLEFVKDFKSCLDIGSGAGLP 60
Query: 61 AIPLALEKPEVKFILLEPRIKRAAFLNYLKSVLPLKNIEIIKKRLEDYQNLLQVDLITSR 120
AIPLALEKPE +FILLEPR+KRAAFLNYLKSVLPL NIEIIKKRLEDYQNLLQVDLITSR
Sbjct: 61 AIPLALEKPEAQFILLEPRVKRAAFLNYLKSVLPLNNIEIIKKRLEDYQNLLQVDLITSR 120
Query: 121 AVASSSFLIEKSQRFLKDKGYFLFYKGEQLKDEIACKDTECFMHQKRVYFYKSKESLC 178
AVASSSFLIEKSQRFLKDKGYFLFYKGEQLK+EIA K TECFMHQKRVYFYKSKESLC
Sbjct: 121 AVASSSFLIEKSQRFLKDKGYFLFYKGEQLKNEIAYKTTECFMHQKRVYFYKSKESLC 178
>ref|NP_224115.1| putative [Helicobacter pylori J99]
Length = 238
Score = 37.0 bits (84), Expect = 3e-04
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 22/122 (18%)
Query: 43 FIKDFKSCLDIGSGAGLPAIPLALEKPEVKFILLEPRIKRAAFLNYLKSVLPLKNIEIIK 102
FIK+ + LDIGSG G+ + A + P L+E + + AF + K+ L N ++ +
Sbjct: 31 FIKNSGAILDIGSGCGVLGLLCARDNPLASVHLVE-KDSKMAFCSQ-KNALKFPNAQVFE 88
Query: 103 KRLEDYQNLLQVDLIT------------------SRAVASSSF--LIEKSQRFLKDKGYF 142
D+ + D I +R + F L+ K ++ LK KGYF
Sbjct: 89 SDFLDFNPPILYDAIVCNPPFYALGSIKSQIKGHARHQSELDFASLVAKVKKCLKPKGYF 148
Query: 143 LF 144
+F
Sbjct: 149 IF 150
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 33.1 bits (74), Expect = 0.004
Identities = 23/96 (23%), Positives = 48/96 (49%), Gaps = 4/96 (4%)
Query: 66 LEKPEVKFILLEPRIKRAAFLNYLKSVLPLKNIEIIKKRLEDYQNLLQVDL-ITSRAVAS 124
LE P+ + + +A+ L + ++ + +I K ED + ++++D + A +
Sbjct: 206 LEDPKTLQLEAKELQTQASLLLTYQHLINRRENRVILKDFEDKECMIEIDKSMPLNAFIN 265
Query: 125 SSFLIEKSQRFLKDKGYFLFYKGEQLKDEIACKDTE 160
F + K + K K FL+ + E LK++IA K+ +
Sbjct: 266 KKFTLSKKK---KQKSQFLYLEEENLKEKIAFKENQ 298
>ref|NP_223717.1| PROTOPORPHYRINOGEN OXIDASE [Helicobacter pylori J99]
Length = 276
Score = 32.0 bits (71), Expect = 0.010
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 39 KPLEFIKDF--KSCLDIGSGAGLPAIPLALEKPEVKFIL--LEPRIKRAAFLNYLKSVLP 94
K L I + K +IG G+G ++ LALE P + + P+ A N + L
Sbjct: 102 KALNIISQYHLKEIGEIGIGSGCVSVSLALENPNLSIYASDISPKALEVALKNIERFCLK 161
Query: 95 LKNIEIIKKRLEDYQNLLQVDLITSRAVASSSFLIEKSQRFLKDKGYFLFYKGEQLKDEI 154
+ + + + RL D+ +++ L+++ + ++ +EKS + F KG+++ EI
Sbjct: 162 -ERVFLKQTRLWDHMPTIEM-LVSNPPYIARNYPLEKSVLKEPHEALFGGVKGDEILKEI 219
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 31.2 bits (69), Expect = 0.017
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 99 EIIKKRLEDYQNLLQVDLITSRAVASSSFLIEKSQRFLKDKGYFLFYKGEQLKDEIACKD 158
E++ K+L+DYQN + + L R + L +K + F + K +++ + ++ K+
Sbjct: 486 ELVSKQLQDYQNTMLL-LAKERLLFLEQDLKQKEEEFERAKEHYVKSSKHYRETSLSPKE 544
Query: 159 TECFMHQKRVYFYKSKESL 177
+ F+ Q + + SK+ L
Sbjct: 545 KQGFLKQIKQFSKISKDIL 563
>ref|NP_223999.1| putative [Helicobacter pylori J99]
Length = 464
Score = 28.1 bits (61), Expect = 0.14
Identities = 34/110 (30%), Positives = 49/110 (43%), Gaps = 27/110 (24%)
Query: 22 SGAKNLSELEPQITDALKPLE--FIKDF-KSCLDIGSGAGLPAIPLALEK---------- 68
SG ++ LE +IT KPLE F ++F K G GL IP +K
Sbjct: 259 SGVVSIQALECEITSNNKPLELVFCENFPKKLSAFALGMGLENIPKDFKKWLELAPCVLD 318
Query: 69 ------PEV-----KFILLEPRIKRAAFLNYLKSV-LPLKNIEIIKKRLE 106
EV K ++L P K FL+ LKSV + + +E++ +LE
Sbjct: 319 AGVFYHKEVLQALEKEVILTPHPKE--FLSLLKSVGINISMLELLDNKLE 366
>ref|NP_223475.1| putative osmoprotection binding protein [Helicobacter pylori J99]
Length = 553
Score = 27.7 bits (60), Expect = 0.19
Identities = 20/53 (37%), Positives = 29/53 (53%), Gaps = 1/53 (1%)
Query: 84 AFLNYLKSVLPLK-NIEIIKKRLEDYQNLLQVDLITSRAVASSSFLIEKSQRF 135
A++N LK+ L K + E IKKR E NLL V L+ S + E +Q++
Sbjct: 350 AWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQKY 402
>ref|NP_223803.1| putative cAMP-induced cell filamentation protein [Helicobacter
pylori J99]
Length = 175
Score = 25.8 bits (55), Expect = 0.70
Identities = 19/48 (39%), Positives = 28/48 (57%), Gaps = 4/48 (8%)
Query: 66 LEKPEVKFILLEPRIKRAAFLNYLKSVLPLKNIEI---IKKRLEDYQN 110
L K E+K I L RI +AA+L+ +K P+ ++EI +KK L N
Sbjct: 111 LLKKELKKIALWDRIDKAAYLSAIKR-SPVNDLEIKTLLKKHLSSNIN 157
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 25.4 bits (54), Expect = 0.92
Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 17/122 (13%)
Query: 21 LSGAKNLSELEPQIT---DALKPLEFIKDFKSCLDIG--SGAGLPAIPLA-LEKPEVKFI 74
L+ A+ L++LE + +A+K L+F + K +D +G+ +P + + L V++I
Sbjct: 967 LANAEKLAKLETEKAFKAEAVKKLDF-NEIKKLIDESPRTGSSMPILGMQNLNAEAVEYI 1025
Query: 75 L----------LEPRIKRAAFLNYLKSVLPLKNIEIIKKRLEDYQNLLQVDLITSRAVAS 124
+EP + L Y + + + I L++++NL D+ R ++
Sbjct: 1026 QKNHKRIAVEKIEPSFAKDLKLKYPDDARAVMDYQAINHILKEHKNLAYEDIANYRELSK 1085
Query: 125 SS 126
+
Sbjct: 1086 QA 1087
>ref|NP_224126.1| putative [Helicobacter pylori J99]
Length = 227
Score = 24.3 bits (51), Expect = 2.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 81 KRAAFLNYLKSVLPLKNIEIIKKRLEDYQNLLQV 114
K+ NY+K+ + L + I+ R ++NLL++
Sbjct: 138 KKRLLYNYIKAHIALNLLWTIRNRTYHWENLLKI 171
>ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99]
Length = 686
Score = 23.9 bits (50), Expect = 2.7
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 27/135 (20%)
Query: 36 DALKPLEFIKDFKSCL--DIGSGAGLPAIPLALEKPEVKFILLEPRIKRAAFLNYLKSVL 93
+ALK E +KD K+CL D+ + + +KP + LLE K ++ L L
Sbjct: 227 EALKLFESLKDNKACLLKDLKNS----VVETKPKKPFITSTLLE---KASSMLG-----L 274
Query: 94 PLKNIEIIKKRLEDYQNLLQVDLITSRAVASSSFLIEKSQRFLKDKGYFL--FYKGEQLK 151
+ ++ + QNL + LIT + S +E FL + F YK LK
Sbjct: 275 SISEVQSLA------QNLFEAGLITYIRTDAESLSVE----FLDETESFYAPIYKDLYLK 324
Query: 152 DEI-ACKDTECFMHQ 165
E A K ++ H+
Sbjct: 325 REYKAGKQSQAEAHE 339
>ref|NP_223434.1| ACONITATE HYDRATASE [Helicobacter pylori J99]
Length = 852
Score = 23.9 bits (50), Expect = 2.7
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 42 EFIKDFKSCLDIGSGAGLPAIPLALEKPEVKFILLEPRIKRAAFLNYL 89
+F++D+K + G+P +PL ++ E +L AAF L
Sbjct: 3 DFLEDYKKSVLERKSEGIPPLPLNAKQVEAVVEILMKDPTNAAFAKEL 50
>ref|NP_223387.1| putative [Helicobacter pylori J99]
Length = 371
Score = 23.9 bits (50), Expect = 2.7
Identities = 12/43 (27%), Positives = 23/43 (52%)
Query: 4 LLQDYARILLEWNQTHNLSGAKNLSELEPQITDALKPLEFIKD 46
L++D R E + S KN+ +LE ++ D+L ++ I +
Sbjct: 178 LIEDIERRFKECEEQFRGSVGKNIEQLEERVKDSLAIIKRINN 220
>ref|NP_223264.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 433
Score = 23.9 bits (50), Expect = 2.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 145 YKGEQLKDEIACKDTECFMHQKRVYFYKSKESLC 178
+ +QL+ +I+ KD+E +K V Y+S +LC
Sbjct: 2 FGNKQLQLQISQKDSEIAELKKEVNLYQSLLNLC 35
>ref|NP_223997.1| DNA transfer protein [Helicobacter pylori J99]
Length = 409
Score = 23.5 bits (49), Expect = 3.5
Identities = 10/26 (38%), Positives = 13/26 (49%)
Query: 25 KNLSELEPQITDALKPLEFIKDFKSC 50
KNL Q +KP F++ KSC
Sbjct: 62 KNLQYRYAQFFGKIKPCSFLESLKSC 87
>ref|NP_223260.1| putative [Helicobacter pylori J99]
Length = 490
Score = 23.5 bits (49), Expect = 3.5
Identities = 21/90 (23%), Positives = 37/90 (40%), Gaps = 6/90 (6%)
Query: 79 RIKRAAFLNYLKSVLP--LKNIEIIKKRLEDYQNLLQVDLITSRAVASSSFLIEKSQRFL 136
R+K + NY S K +I + Y++L+ + ++ S FL+E L
Sbjct: 350 RLKTSRAKNYYISAARRGTKFTYLITAPNKHYKDLMIISMLNSDKQVHGEFLLELGNAKL 409
Query: 137 KDKGYFLFYKGEQLKDEIACKDTECFMHQK 166
K+K GE + + KD + + K
Sbjct: 410 KEKRGL----GELVISALVLKDNKLYAFSK 435
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 23.1 bits (48), Expect = 4.6
Identities = 11/38 (28%), Positives = 21/38 (54%)
Query: 101 IKKRLEDYQNLLQVDLITSRAVASSSFLIEKSQRFLKD 138
+K+R+ DY +LQ + + S S + L E +++ D
Sbjct: 52 MKERILDYLKILQKENLESEKEKSQNILKELEEKYHLD 89
>ref|NP_223730.1| putative [Helicobacter pylori J99]
Length = 182
Score = 23.1 bits (48), Expect = 4.6
Identities = 11/28 (39%), Positives = 16/28 (56%)
Query: 148 EQLKDEIACKDTECFMHQKRVYFYKSKE 175
+QL I KD ++H++R YF K E
Sbjct: 113 DQLLYRIFKKDEIHYIHKERKYFMKQNE 140
>ref|NP_223249.1| putative FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
Length = 123
Score = 23.1 bits (48), Expect = 4.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 107 DYQNLLQVDLITSRAVASSSFLIEKSQRFLK 137
DY+NLL ++++ S + S+ + + RF K
Sbjct: 37 DYKNLLDMEIVFSAELGSTQIPLLQILRFEK 67
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 22.7 bits (47), Expect = 6.0
Identities = 10/30 (33%), Positives = 18/30 (59%)
Query: 16 NQTHNLSGAKNLSELEPQITDALKPLEFIK 45
N T+N + A N+S + +I++ K + IK
Sbjct: 177 NTTNNANSASNVSNAKKEISEVKKQEQEIK 206
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 22.3 bits (46), Expect = 7.8
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 65 ALEKPEVKFILLEPRIKRAAFLNYLKSVLPLKNIEIIKK 103
A K E+ + ++ A +L+ PL ++E IKK
Sbjct: 200 AQRKAELSSQQFQGEVQELAIEEFLRQKFPLDSVEEIKK 238
>ref|NP_222809.1| putative keto-acid dehydrogenase [Helicobacter pylori J99]
Length = 314
Score = 22.3 bits (46), Expect = 7.8
Identities = 18/57 (31%), Positives = 28/57 (48%), Gaps = 6/57 (10%)
Query: 37 ALKPLEFIKDFKSCLDIGSG--AGLPAIPLALEKPEVKF----ILLEPRIKRAAFLN 87
ALK L+ +KD +++G G + L LE ++ + + EP K AFLN
Sbjct: 218 ALKELQSLKDGAILINVGRGGIVNEKDLALILETKDLYYASDVFVKEPFEKDHAFLN 274
>ref|NP_222780.1| putative [Helicobacter pylori J99]
Length = 500
Score = 22.3 bits (46), Expect = 7.8
Identities = 31/138 (22%), Positives = 54/138 (38%), Gaps = 21/138 (15%)
Query: 25 KNLSELEPQITDALKPLEFIKDFKSCLDIGSGAGLPAIPLALEKPEVKFILLEPRIKRAA 84
K +LE I + K D K L + GA + ++ P + + A
Sbjct: 50 KTEMQLEKAIGELKKAKSNEDDAKVALRVLQGASV----VSWIWPPARIAATAAIVAAEA 105
Query: 85 FLNYLKSVLPL--KNIEIIKKRLEDYQNLLQVDLITSRAVASSSFL------IEKSQRFL 136
L ++K +N+E++++ LE Y N +A AS++ + I+K F
Sbjct: 106 VLKFMKEDTEKCKRNVELLERMLEIYSN---------QAKASANLMNQAWEGIKKRLHFY 156
Query: 137 KDKGYFLFYKGEQLKDEI 154
DK + +Q D I
Sbjct: 157 TDKHQEFIRRLKQASDAI 174
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.139 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,842
Number of Sequences: 1491
Number of extensions: 9030
Number of successful extensions: 50
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 24
length of query: 178
length of database: 494,079
effective HSP length: 72
effective length of query: 106
effective length of database: 386,727
effective search space: 40993062
effective search space used: 40993062
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)