BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645678|ref|NP_207855.1| hypothetical protein
[Helicobacter pylori 26695]
(93 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223080.1| putative [Helicobacter pylori J99] 178 1e-47
ref|NP_223819.1| putative [Helicobacter pylori J99] 23 0.80
ref|NP_224165.1| NA(+)/H(+) ANTIPORTER 1 [Helicobacter pylo... 22 1.8
ref|NP_223556.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_223083.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_222971.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 22 1.8
ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helic... 22 2.3
ref|NP_224059.1| putative RIBONUCLEASE P PROTEIN COMPONENT ... 21 4.0
ref|NP_223991.1| NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [H... 21 5.2
ref|NP_223067.1| HIGH-AFFINITY NICKEL-TRANSPORT PROTEIN [He... 21 5.2
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 20 6.8
ref|NP_222950.1| putative histidine kinase sensor protein [... 20 6.8
ref|NP_223788.1| putative [Helicobacter pylori J99] 20 8.9
ref|NP_223399.1| putative [Helicobacter pylori J99] 20 8.9
ref|NP_223126.1| PHOSPHATIDYLGLYCEROPHOSPHATE SYNTHASE [Hel... 20 8.9
>ref|NP_223080.1| putative [Helicobacter pylori J99]
Length = 97
Score = 178 bits (452), Expect = 1e-47
Identities = 89/96 (92%), Positives = 89/96 (92%), Gaps = 4/96 (4%)
Query: 1 MLYASKTSLFLQIKGKFMLRILIPLLIIVWVLWRLFLRQKPPKD----NHSYTQQTPKEL 56
MLYASK LFLQIKGKFMLRILIPLLIIVWVLWRLFLRQKP KD NHSYTQQTPKEL
Sbjct: 1 MLYASKARLFLQIKGKFMLRILIPLLIIVWVLWRLFLRQKPHKDDHRDNHSYTQQTPKEL 60
Query: 57 EDHMIVCSKCQTYVSSKDAIYSGAVAYCSETCLKDK 92
EDHMIVCSKCQTYVSSKDAIYSGAVAYCSETCLKDK
Sbjct: 61 EDHMIVCSKCQTYVSSKDAIYSGAVAYCSETCLKDK 96
>ref|NP_223819.1| putative [Helicobacter pylori J99]
Length = 435
Score = 23.5 bits (49), Expect = 0.80
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 11 LQIKGKFMLRILIPLLIIVWVL 32
L+IKG F++ +LI I+ WVL
Sbjct: 186 LKIKGSFIIAVLI-TSILAWVL 206
>ref|NP_224165.1| NA(+)/H(+) ANTIPORTER 1 [Helicobacter pylori J99]
Length = 438
Score = 22.3 bits (46), Expect = 1.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 1 MLYASKTSLFLQIKGKFMLRILIPLLIIVWVLW 33
+L A L L I + +R LIP L++ +LW
Sbjct: 192 LLGALGVVLVLAILNRLNIRSLIPYLLLGVLLW 224
>ref|NP_223556.1| putative [Helicobacter pylori J99]
Length = 42
Score = 22.3 bits (46), Expect = 1.8
Identities = 10/22 (45%), Positives = 15/22 (67%)
Query: 19 LRILIPLLIIVWVLWRLFLRQK 40
L + I LLII+W + +L L+ K
Sbjct: 12 LLLTIILLIIIWRIIKLVLKDK 33
>ref|NP_223083.1| putative [Helicobacter pylori J99]
Length = 249
Score = 22.3 bits (46), Expect = 1.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 9 LFLQIKGKFMLRILIPLLIIVWVLW 33
+ + +K F I+I + II W LW
Sbjct: 58 VMVAVKISFSAAIVISMPIIFWQLW 82
>ref|NP_222971.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 239
Score = 22.3 bits (46), Expect = 1.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 1 MLYASKTSLFLQIKGKFMLRILIPLLIIVWVLWRLFL 37
++ ASK + L + F++ + IP L++ +L R L
Sbjct: 162 IMSASKDAYGLMLMVVFVMGLAIPFLLVALMLERALL 198
>ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 681
Score = 21.9 bits (45), Expect = 2.3
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 34 RLFLRQKPPKDNHSYTQQTPKELED 58
+L + KPPK NH + TP ++ D
Sbjct: 611 QLLQQDKPPKQNHQ--KDTPIKVGD 633
>ref|NP_224059.1| putative RIBONUCLEASE P PROTEIN COMPONENT [Helicobacter pylori
J99]
Length = 161
Score = 21.2 bits (43), Expect = 4.0
Identities = 9/32 (28%), Positives = 16/32 (49%)
Query: 32 LWRLFLRQKPPKDNHSYTQQTPKELEDHMIVC 63
L+ L L ++PPK+ + L+D +C
Sbjct: 42 LFVLDLSKEPPKEKEGFKDPLSCRLKDRNTLC 73
>ref|NP_223991.1| NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [Helicobacter pylori J99]
Length = 273
Score = 20.8 bits (42), Expect = 5.2
Identities = 11/41 (26%), Positives = 21/41 (50%)
Query: 40 KPPKDNHSYTQQTPKELEDHMIVCSKCQTYVSSKDAIYSGA 80
K KD S+ K L + +C+++ +K+A+ +GA
Sbjct: 163 KHVKDLKSFLTHARKNLPFTAKIEIECESFEEAKNAMSAGA 203
>ref|NP_223067.1| HIGH-AFFINITY NICKEL-TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 331
Score = 20.8 bits (42), Expect = 5.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 1 MLYASKTSLFLQIKGKFMLR 20
+L+A+ SLF + G FML+
Sbjct: 221 ILFAAGMSLFDTLDGAFMLK 240
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 20.4 bits (41), Expect = 6.8
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 40 KPPKDNHSYTQQTPKELEDHMIVCSKCQTYVSSKD 74
K P++ P+ LE+ + KC + KD
Sbjct: 256 KSPEEMAKLFADIPEALENTQEIADKCVLEIDLKD 290
>ref|NP_222950.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 381
Score = 20.4 bits (41), Expect = 6.8
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 49 TQQTPKELEDHMIVCSKCQTYVSSKDAIYS 78
T+Q+ K LE + C TY D +++
Sbjct: 237 TKQSLKTLESDLKEALNCYTYSKDIDFLFN 266
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 20.0 bits (40), Expect = 8.9
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 63 CSKCQTYVSSKDAIY 77
C KCQ ++ +A+Y
Sbjct: 11 CPKCQEPINVSEALY 25
>ref|NP_223399.1| putative [Helicobacter pylori J99]
Length = 404
Score = 20.0 bits (40), Expect = 8.9
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 43 KDNHSYTQQTPKELED 58
KD H Q KE+ED
Sbjct: 104 KDYHDTMQSIKKEMED 119
>ref|NP_223126.1| PHOSPHATIDYLGLYCEROPHOSPHATE SYNTHASE [Helicobacter pylori J99]
Length = 200
Score = 20.0 bits (40), Expect = 8.9
Identities = 13/31 (41%), Positives = 18/31 (57%)
Query: 7 TSLFLQIKGKFMLRILIPLLIIVWVLWRLFL 37
TSLF +K +L + +L IV L+ LFL
Sbjct: 16 TSLFESMKVLKLLPNFLTILRIVLSLFLLFL 46
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.325 0.137 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,912
Number of Sequences: 1491
Number of extensions: 3452
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 93
length of database: 494,079
effective HSP length: 69
effective length of query: 24
effective length of database: 391,200
effective search space: 9388800
effective search space used: 9388800
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 40 (20.0 bits)