BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645679|ref|NP_207856.1| hypothetical protein
[Helicobacter pylori 26695]
(135 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223079.1| putative [Helicobacter pylori J99] 260 8e-72
ref|NP_223723.1| putative [Helicobacter pylori J99] 23 2.9
ref|NP_224003.1| putative [Helicobacter pylori J99] 22 8.4
ref|NP_223969.1| putative [Helicobacter pylori J99] 22 8.4
ref|NP_223503.1| TYPE I RESTRICTIONENZYME (SPECIFICITY SUBU... 22 8.4
ref|NP_222901.1| TRIOSE PHOPHATE ISOMERASE [Helicobacter py... 22 8.4
>ref|NP_223079.1| putative [Helicobacter pylori J99]
Length = 135
Score = 260 bits (665), Expect = 8e-72
Identities = 126/135 (93%), Positives = 130/135 (95%)
Query: 1 MLILGHPLIPSARFVFIKNTDAIHSNTNNDIVCFEAHPKNLELAKYCCENSVHFSVIFLS 60
MLILGHPLIPSARFVFIKNTDAIHS+ NNDIVCFEA+PKNLELA+YCCEN VHFSVIFLS
Sbjct: 1 MLILGHPLIPSARFVFIKNTDAIHSSANNDIVCFEANPKNLELAQYCCENGVHFSVIFLS 60
Query: 61 HKIETDTFFLFNAFKPLYCIFKDIKQAILAQQHATNYLLDSKILFFMDLNDTELWEICAK 120
HKIETDTFFLFNAFKPLYCIFKDIKQAILAQQHATNYLLDSKILF MD NDTE WEICAK
Sbjct: 61 HKIETDTFFLFNAFKPLYCIFKDIKQAILAQQHATNYLLDSKILFSMDFNDTESWEICAK 120
Query: 121 SQIDGVISKDSLLLK 135
+QIDGVISKDSLLLK
Sbjct: 121 NQIDGVISKDSLLLK 135
>ref|NP_223723.1| putative [Helicobacter pylori J99]
Length = 143
Score = 23.1 bits (48), Expect = 2.9
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 82 KDIKQAILAQQHATNYLLDSKILFFMD 108
K +K AI ++ Y+ +KIL+F++
Sbjct: 107 KSVKFAITKKERMKAYIKKAKILYFLE 133
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 21.6 bits (44), Expect = 8.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 70 LFNAFKPLYCIFKDIKQA 87
L NAF+ L F+D K++
Sbjct: 55 LINAFRVLVAYFRDFKES 72
>ref|NP_223969.1| putative [Helicobacter pylori J99]
Length = 228
Score = 21.6 bits (44), Expect = 8.4
Identities = 7/19 (36%), Positives = 12/19 (62%)
Query: 58 FLSHKIETDTFFLFNAFKP 76
+L+H + +TF L N + P
Sbjct: 103 YLAHALTDETFALLNLYAP 121
>ref|NP_223503.1| TYPE I RESTRICTIONENZYME (SPECIFICITY SUBUNIT) [Helicobacter pylori
J99]
Length = 207
Score = 21.6 bits (44), Expect = 8.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 95 TNYLLDSKILFFMDLNDTELWE 116
TN LL + F++ N+T++ E
Sbjct: 103 TNELLTKFLYFYLKTNETQIME 124
>ref|NP_222901.1| TRIOSE PHOPHATE ISOMERASE [Helicobacter pylori J99]
Length = 234
Score = 21.6 bits (44), Expect = 8.4
Identities = 24/78 (30%), Positives = 36/78 (45%), Gaps = 7/78 (8%)
Query: 58 FLSHKIETDTFFLFNAFKPLYCIFKDIKQAILAQQHATNYLLDSKILFFMDLNDTELWEI 117
FL K + FF FK +YCI +D+ + +L S+ L +DLN + L I
Sbjct: 103 FLKEKFD---FFKGKNFKIVYCIGEDLTTREKGFRAVKEFL--SEQLENIDLNYSNL--I 155
Query: 118 CAKSQIDGVISKDSLLLK 135
A I + +K S L+
Sbjct: 156 VAYEPIWAIGTKKSASLE 173
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.327 0.141 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,079
Number of Sequences: 1491
Number of extensions: 6452
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 7
length of query: 135
length of database: 494,079
effective HSP length: 69
effective length of query: 66
effective length of database: 391,200
effective search space: 25819200
effective search space used: 25819200
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 44 (21.6 bits)