BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645680|ref|NP_207857.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(200 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223078.1| putative Outer membrane protein [Helicobac... 415 e-118
ref|NP_224132.1| putative [Helicobacter pylori J99] 169 6e-44
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 56 8e-10
ref|NP_224112.1| putative Outer membrane protein [Helicobac... 55 1e-09
ref|NP_222958.1| putative Outer membrane protein [Helicobac... 54 2e-09
ref|NP_222935.1| Outer membrane protein/porin [Helicobacter... 54 3e-09
ref|NP_223332.1| putative Outer membrane protein [Helicobac... 52 1e-08
ref|NP_223027.1| putative Outer membrane protein [Helicobac... 50 4e-08
ref|NP_223142.1| putative Outer membrane protein [Helicobac... 46 6e-07
ref|NP_222959.1| putative Outer membrane protein [Helicobac... 45 1e-06
ref|NP_223800.1| putative Outer membrane protein [Helicobac... 45 2e-06
ref|NP_223380.1| putative Outer membrane protein [Helicobac... 45 2e-06
ref|NP_223377.1| putative Outer membrane protein [Helicobac... 45 2e-06
ref|NP_224080.1| putative Outer membrane protein [Helicobac... 44 2e-06
ref|NP_222743.1| putative Outer membrane protein [Helicobac... 42 9e-06
ref|NP_223567.1| Outer membrane protein/porin [Helicobacter... 42 1e-05
ref|NP_222729.1| putative Outer membrane protein [Helicobac... 42 1e-05
ref|NP_223575.1| putative Outer membrane protein [Helicobac... 40 6e-05
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 40 6e-05
ref|NP_224150.1| putative OUTER MEMBRANE PROTEIN [Helicobac... 39 7e-05
ref|NP_223363.1| Outer membrane protein/porin [Helicobacter... 34 0.002
ref|NP_222795.1| putative Outer membrane protein [Helicobac... 34 0.003
ref|NP_223566.1| Outer membrane protein/porin [Helicobacter... 33 0.004
ref|NP_223450.1| putative Outer membrane protein [Helicobac... 30 0.058
ref|NP_223299.1| putative Outer membrane protein [Helicobac... 27 0.29
ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROT... 27 0.38
ref|NP_223856.1| putative role in outermembrane permeabilit... 26 0.64
ref|NP_223263.1| 8-amino-7-oxononanoate synthase [Helicobac... 24 3.2
ref|NP_223381.1| putative Outer membrane protein [Helicobac... 23 4.2
ref|NP_223656.1| putative [Helicobacter pylori J99] 23 7.1
ref|NP_224162.1| ELONGATION FACTOR TS (EF-TS) [Helicobacter... 22 9.3
ref|NP_223979.1| putative Outer membrane protein [Helicobac... 22 9.3
ref|NP_223820.1| putative Outer membrane function [Helicoba... 22 9.3
ref|NP_223511.1| ADP-L-GLYCERO-D-MANNOHEPTOSE-6-EPIMERASE [... 22 9.3
ref|NP_222933.1| putative Outer membrane protein [Helicobac... 22 9.3
>ref|NP_223078.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 200
Score = 415 bits (1066), Expect = e-118
Identities = 200/200 (100%), Positives = 200/200 (100%)
Query: 1 MHYLRILILSMSFLNILNAENLSYMSSSYQIGTVFMRPLNTNKLLQGASILQGYEVNPKN 60
MHYLRILILSMSFLNILNAENLSYMSSSYQIGTVFMRPLNTNKLLQGASILQGYEVNPKN
Sbjct: 1 MHYLRILILSMSFLNILNAENLSYMSSSYQIGTVFMRPLNTNKLLQGASILQGYEVNPKN 60
Query: 61 DWAYSRYYFFIDYGNVLFNNDSTLQANMFTYGVGGDFMVAYAKNPINRWAFFFGLQLAAN 120
DWAYSRYYFFIDYGNVLFNNDSTLQANMFTYGVGGDFMVAYAKNPINRWAFFFGLQLAAN
Sbjct: 61 DWAYSRYYFFIDYGNVLFNNDSTLQANMFTYGVGGDFMVAYAKNPINRWAFFFGLQLAAN 120
Query: 121 TWILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKIFLTP 180
TWILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKIFLTP
Sbjct: 121 TWILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKIFLTP 180
Query: 181 ERRSLFERSFLFFVSHSWHF 200
ERRSLFERSFLFFVSHSWHF
Sbjct: 181 ERRSLFERSFLFFVSHSWHF 200
>ref|NP_224132.1| putative [Helicobacter pylori J99]
Length = 211
Score = 169 bits (427), Expect = 6e-44
Identities = 79/196 (40%), Positives = 127/196 (64%), Gaps = 3/196 (1%)
Query: 7 LILSMSFLN--ILNAENLSYMSSSYQIGTVFMRPLNTNK-LLQGASILQGYEVNPKNDWA 63
L LS+ FL+ + A++ Y++S YQ+G + M+ N K ++GAS G+E+NP N W
Sbjct: 15 LFLSVYFLSPTLTQAKSRFYVASQYQVGKMIMKKYNDLKRTIEGASFSLGWEINPTNYWF 74
Query: 64 YSRYYFFIDYGNVLFNNDSTLQANMFTYGVGGDFMVAYAKNPINRWAFFFGLQLAANTWI 123
YSRYYFF+DYGNV+ N + QANMFTYG GGD ++ Y KNP+ ++ F+G+Q+A NTW
Sbjct: 75 YSRYYFFMDYGNVILNKRTGAQANMFTYGFGGDLIMEYNKNPLYVFSLFYGMQVAENTWT 134
Query: 124 LNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKIFLTPERR 183
++ + +++ W S++ F+ + FR +G G +F+T++ +H +E+G+K E
Sbjct: 135 ISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDASIEVGIKWPFAFEYD 194
Query: 184 SLFERSFLFFVSHSWH 199
S F R F F+SH+++
Sbjct: 195 SPFVRLFSVFISHTFY 210
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 55.8 bits (133), Expect = 8e-10
Identities = 33/98 (33%), Positives = 54/98 (54%), Gaps = 9/98 (9%)
Query: 66 RYYFFIDYG-NVLFNNDSTLQANMFTYGVGGDFMVAYAKNPINRWAFFFGL----QLAAN 120
R+YFF DYG + + + +++AN+F YGVG DF+ + N A FGL QL
Sbjct: 1083 RHYFFFDYGFSEIGLANQSVKANIFAYGVGTDFLWNLFRRTYNTKALNFGLFAGVQLGGA 1142
Query: 121 TWILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQ 158
TW+ + ++ +++ W + D H+T F+ FGV+
Sbjct: 1143 TWL--SSLRQQIIDNWGNAND--IHSTNFQVALNFGVR 1176
Score = 23.5 bits (49), Expect = 4.2
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 15 NILNAENLSYMSSSYQIGTVFMRPLNTNKLLQGASIL 51
++L +N YMS YQIG + +N +LL+ +I+
Sbjct: 16 SLLAEDNGWYMSVGYQIGGT-QQFINNKQLLENQNII 51
>ref|NP_224112.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 388
Score = 55.5 bits (132), Expect = 1e-09
Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 42 NKLLQGASILQGYE-VNPKNDWAYSRYYFFIDYGNVLFNND-----------STLQANMF 89
N+ + G ++ GY+ K W RYY F DYG+ F+N S +A+M+
Sbjct: 150 NQPMYGLGVMTGYKHFVGKKRWFGLRYYGFFDYGHTNFSNSRAANAISPFYLSDQKADMY 209
Query: 90 TYGVGGDFMVAYAKNPINRWAFFFGLQLAANTWILNNKV 128
TYG G D + P FF G+ A NTW NN+V
Sbjct: 210 TYGFGTDMLFNVIDKPKATAGFFVGVNFAGNTW-TNNRV 247
>ref|NP_222958.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 479
Score = 54.3 bits (129), Expect = 2e-09
Identities = 60/208 (28%), Positives = 96/208 (45%), Gaps = 25/208 (12%)
Query: 14 LNILNAENLSYMSSSYQIGTVFMRP-LNTNKLLQGASILQ-GYEVNPKNDWAYS-----R 66
+NI+NA + SS+ + + P L + K Q AS+ G ++ K + + R
Sbjct: 276 INIINAVLGQFESSASSLYKISYIPNLFSLKDYQSASMNGFGAKMGYKQFFTHKKNIGLR 335
Query: 67 YYFFIDYGNVLFNNDST-LQANMFTYGVGGDFMVAYAKNPINR----WAFFFGLQLAANT 121
YY F+DYG F + + + AN+ TYGVG DF+ + R FFG Q+A T
Sbjct: 336 YYGFLDYGYANFGDTNLKVGANLVTYGVGTDFLYNVYERSRRRERTTIGLFFGAQIAGQT 395
Query: 122 WILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQFRTIVLYHKVD--VEIGMKI--- 176
W N V +L+ +K +F + +G +T H++D +E G+KI
Sbjct: 396 WSTN--VTNLLSGQRPDVKSSSFQ--FLFDLGVRTNFAKTNFNKHRLDQGIEFGVKIPVI 451
Query: 177 ----FLTPERRSLFERSFLFFVSHSWHF 200
F T + + R+F F+V +S F
Sbjct: 452 AHKYFATQGSSASYMRNFSFYVGYSVGF 479
>ref|NP_222935.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 53.9 bits (128), Expect = 3e-09
Identities = 41/144 (28%), Positives = 68/144 (46%), Gaps = 14/144 (9%)
Query: 40 NTNKLLQGASILQGY-EVNPKNDWAYSRYYFFIDYGNVLF-NNDSTLQANMFTYGVGGDF 97
+ N + G + GY + KN + RYY F DY +N +N+FTYG G D
Sbjct: 316 SNNGAMNGVGVQLGYKQFFGKNKFFGIRYYGFFDYNYAYIKSNFFNSASNVFTYGAGSDL 375
Query: 98 MVAYAKNPINR-----WAFFFGLQLAANTWILNNKVKDLVVNTWDSLKDFNFHNTYFRAI 152
++ + +R + F G+ LA TW+ N + N+ S K +NT F+ +
Sbjct: 376 LLNFINGGSDRNRKVSFGIFGGIALAGTTWLNNQSANLKITNSAYSAK---INNTNFQFL 432
Query: 153 GKFGVQFRTIVLYHKVDVEIGMKI 176
G++ + I +H +E+G+KI
Sbjct: 433 FNTGLRLQGI--HH--GIELGVKI 452
Score = 23.1 bits (48), Expect = 5.4
Identities = 11/40 (27%), Positives = 20/40 (49%)
Query: 5 RILILSMSFLNILNAENLSYMSSSYQIGTVFMRPLNTNKL 44
+ ++LS+ ++ + YMS YQIG NT ++
Sbjct: 3 KTILLSLMVSSLFAENDGVYMSVGYQIGEAAQMVKNTGEI 42
>ref|NP_223332.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 270
Score = 51.6 bits (122), Expect = 1e-08
Identities = 38/144 (26%), Positives = 56/144 (38%), Gaps = 41/144 (28%)
Query: 20 ENLSYMSSSYQIGTVFMRPLNTNK------------------LLQGASILQGY-EVNPKN 60
+N Y+ SYQ+G N K ++QG + GY + +
Sbjct: 46 KNAWYLGISYQVGQASQSVKNPPKSSEFNYPKFPVGKTDYLAVMQGLGLTVGYKQFFGEK 105
Query: 61 DWAYSRYYFFIDYGNVLFNNDSTLQAN----------------------MFTYGVGGDFM 98
W +RYY F+DYG+ +F ++ N MFTYGVG D +
Sbjct: 106 RWFGARYYGFMDYGHAVFGANALTSDNGGVCKLNEPCATKVGTMGNLSDMFTYGVGIDTL 165
Query: 99 VAYAKNPINRWAFFFGLQLAANTW 122
+ FFFG Q+A N+W
Sbjct: 166 YNVINKEDASFGFFFGAQIAGNSW 189
>ref|NP_223027.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 245
Score = 50.1 bits (118), Expect = 4e-08
Identities = 54/196 (27%), Positives = 85/196 (42%), Gaps = 29/196 (14%)
Query: 27 SSYQIG-TVFMRPLNTNKLL-----QGASILQGYEVNPKNDWAYS-RYYFFIDYGNVLFN 79
+SYQ G T M +N+ K L G ++ GY D RY+ F+D+
Sbjct: 57 TSYQTGYTNVMTSINSVKKLTNMGSNGIGLVMGYNHFFHPDKVLGLRYFAFLDWQGYGMR 116
Query: 80 NDSTLQA--NMFTYGVGGD-----FMVAYAKNPIN-RWAFFFGLQLAANTWILNNKVKDL 131
NM TYGVG D F ++ ++ I F G+ +A N+W + NK ++L
Sbjct: 117 YPKGYYGGNNMITYGVGVDAIWNFFQGSFYQDDIGVDIGVFGGIAIAGNSWYIGNKGQEL 176
Query: 132 VVNTWDSLKDFNFHNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKI-------FLTPERRS 184
+ T S D NT F+ + FG + + + + EIG K + T +
Sbjct: 177 LGITNSSAVD----NTSFQFLFNFGFK---ALFVDEHEFEIGFKFPTLNNKYYTTDALKV 229
Query: 185 LFERSFLFFVSHSWHF 200
R F F+V +++HF
Sbjct: 230 QMRRVFAFYVGYNYHF 245
>ref|NP_223142.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 186
Score = 46.2 bits (108), Expect = 6e-07
Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 8 ILSMSFLNILNAE-NLSYMSSSYQIGTVFMRPLNTNKL-------LQGASILQGYEVNPK 59
ILS+S L E N +M + YQ G P N+N L G + G+ V
Sbjct: 8 ILSLSASLALAGEVNGFFMGAGYQQGRY--GPYNSNYSDWRHGNDLYGLNFKLGF-VGFA 64
Query: 60 NDWAYSRYYFFIDYGNVLFNNDST--LQANMFTYGVGGDFMVAYAKNPINRWA--FFFGL 115
N W +R Y F+D+ FN T + N+ TYG GGD +V P++++A G+
Sbjct: 65 NKWFGARVYGFLDW----FNTSGTEHTKTNLLTYGGGGDLIVNLI--PLDKFALGLIGGV 118
Query: 116 QLAANTWI 123
QLA NTW+
Sbjct: 119 QLAGNTWM 126
>ref|NP_222959.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 471
Score = 45.4 bits (106), Expect = 1e-06
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 7/63 (11%)
Query: 66 RYYFFIDYG-NVLFNNDSTLQANMFTYGVGGDFM-----VAYAKNPINRWAFFFGLQLAA 119
RYY F DYG L + +S ++AN+FTYG G DF+ ++ +N F G+Q+A
Sbjct: 321 RYYAFFDYGFTQLGSLNSAVKANIFTYGAGTDFLWNIFRRVFSDQSLN-VGVFGGIQIAG 379
Query: 120 NTW 122
NTW
Sbjct: 380 NTW 382
>ref|NP_223800.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 697
Score = 44.7 bits (104), Expect = 2e-06
Identities = 50/193 (25%), Positives = 80/193 (40%), Gaps = 28/193 (14%)
Query: 29 YQIGTV--FMRPLNTNKLLQGASILQGY-EVNPKNDWAYSRYYFFIDYGNVLFNNDSTL- 84
YQ+G F+ + + + G + GY + K RYY F D+G F +S+L
Sbjct: 512 YQMGFARNFLEHNSNSNNMNGFGVKMGYKQFFGKKRMFGLRYYGFYDFGYAQFGTESSLV 571
Query: 85 QANMFTYGVGGDFMVAYAKNPINRWA----FFFGLQLAANTWILNNKVKDLVVNTWDSLK 140
+A + +YG G DF+ A FF G+QLA TW N D V K
Sbjct: 572 KATLSSYGAGTDFLYNVFTRKRGTEAIDIGFFAGIQLAGQTWKTN--FLDQVDGNHLKPK 629
Query: 141 DFNFHNTYFRAIGKFGVQFRTIVLYHK------VDVEIGMKI-------FLTPERRSLFE 187
D T F+ + G++ + H+ +E G+KI + + + +
Sbjct: 630 D-----TSFQFLFDLGIRTNFSKIAHQKRSRFSQGIEFGLKIPVLYHTYYQSEGVTAKYR 684
Query: 188 RSFLFFVSHSWHF 200
R F F+V ++ F
Sbjct: 685 RDFSFYVGYNIGF 697
>ref|NP_223380.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 651
Score = 44.7 bits (104), Expect = 2e-06
Identities = 39/133 (29%), Positives = 55/133 (41%), Gaps = 29/133 (21%)
Query: 40 NTNKLLQGASILQGYE--VNPKNDWAYSRYYFFIDYGN-----VLFNNDSTLQANMFTYG 92
N N L G + GY+ W RYY F DY + FN+ S +++TYG
Sbjct: 472 NNNGALNGLGVQVGYKQFFGESKRWGL-RYYGFFDYNHGYIKSSFFNSSS----DIWTYG 526
Query: 93 VGGDFMVAYAKNPINR------WAFFFGLQLAANTWILNNKVKDLVVNTWDSLKDFNFHN 146
G D +V + + I R F G+QLA TW LN++ +L F+N
Sbjct: 527 GGSDLLVNFINDSITRKNNKLSVGLFGGIQLAGTTW-LNSQYMNLTA----------FNN 575
Query: 147 TYFRAIGKFGVQF 159
Y + QF
Sbjct: 576 PYSAKVNASNFQF 588
Score = 23.9 bits (50), Expect = 3.2
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 6 ILILSMSFLN-ILNAE-NLSYMSSSYQIGTVFMRPLNTNKL 44
+L LS+S + +L+AE N ++S+ YQIG NT +L
Sbjct: 6 LLSLSLSLASSLLHAEDNGFFVSAGYQIGEAVQMVKNTGEL 46
>ref|NP_223377.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 638
Score = 44.7 bits (104), Expect = 2e-06
Identities = 39/133 (29%), Positives = 55/133 (41%), Gaps = 29/133 (21%)
Query: 40 NTNKLLQGASILQGYE--VNPKNDWAYSRYYFFIDYGN-----VLFNNDSTLQANMFTYG 92
N N L G + GY+ W RYY F DY + FN+ S +++TYG
Sbjct: 459 NNNGALNGLGVQVGYKQFFGESKRWGL-RYYGFFDYNHGYIKSSFFNSSS----DIWTYG 513
Query: 93 VGGDFMVAYAKNPINR------WAFFFGLQLAANTWILNNKVKDLVVNTWDSLKDFNFHN 146
G D +V + + I R F G+QLA TW LN++ +L F+N
Sbjct: 514 GGSDLLVNFINDSITRKNNKLSVGLFGGIQLAGTTW-LNSQYMNLTA----------FNN 562
Query: 147 TYFRAIGKFGVQF 159
Y + QF
Sbjct: 563 PYSAKVNASNFQF 575
Score = 23.9 bits (50), Expect = 3.2
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 6 ILILSMSFLN-ILNAE-NLSYMSSSYQIGTVFMRPLNTNKL 44
+L LS+S + +L+AE N ++S+ YQIG NT +L
Sbjct: 6 LLSLSLSLASSLLHAEDNGFFVSAGYQIGEAVQMVKNTGEL 46
>ref|NP_224080.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 248
Score = 44.3 bits (103), Expect = 2e-06
Identities = 51/216 (23%), Positives = 85/216 (38%), Gaps = 51/216 (23%)
Query: 5 RILILSMSFLNILNAENLSYMSSSYQIGTV-----------FMRPLNTNKLLQGASILQG 53
RI++L + E+ +++ +YQ+ + +PL G G
Sbjct: 4 RIVLLGALGVLANAEESAAFVGVNYQVSMIQNQTKMVNDNGLQKPLIKFPPYAGPGFEVG 63
Query: 54 Y-EVNPKNDWAYSRYYFFIDY---------------------------GNVLFNNDS--- 82
Y + K W RYY F DY GN L DS
Sbjct: 64 YKQFFGKKKWFGMRYYGFFDYAHNRFGVMKKGIPVGESGFIYNSFSFGGNTLTERDSYQG 123
Query: 83 TLQANMFTYGVGGDFMVAYAKNPINRWAFFFGLQLAANTWI--LNNKVKDLVVNTWDSLK 140
N+FTYGVG D + + + F G+QLA ++W ++ ++ V + +S
Sbjct: 124 QYYINLFTYGVGLDTLWNFVNKENMVFGFVVGIQLAGDSWATSISKEIGSYVKHHSNS-- 181
Query: 141 DFNFHNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKI 176
++ F+ + KFGV RT + H +E+G+K+
Sbjct: 182 --SYSPANFQFLWKFGV--RTHIAIHN-SLELGIKV 212
>ref|NP_222743.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 690
Score = 42.4 bits (98), Expect = 9e-06
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 19/150 (12%)
Query: 42 NKLLQGASILQGY-EVNPKNDWAYSRYYFFIDYGNVLFNNDSTLQAN--MFTYGVGGDFM 98
N + G GY + KN +RYY F+DY N +N A+ ++TYGVG D +
Sbjct: 514 NGAMNGIGFQVGYKQFFGKNKRWGARYYGFVDY-NHTYNKSQFFNASSDVWTYGVGSDLL 572
Query: 99 VAYAKNPINR-----WAFFFGLQLAANTWILNNKVKDLVVNTWDSLKDFNFHNTYFRAIG 153
V + + + + F G+ LA +W+ + V VN + K + F+ +
Sbjct: 573 VNFINDKATKHNKISFGAFGGIALAGTSWLNSQYVNLANVNNYYKAK---INTANFQFLF 629
Query: 154 KFGVQFRTIVLYHKV-------DVEIGMKI 176
G++ H+ +E+G KI
Sbjct: 630 NLGLRMNLARKKHRATDNAAQHGIELGTKI 659
>ref|NP_223567.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 527
Score = 41.6 bits (96), Expect = 1e-05
Identities = 33/117 (28%), Positives = 54/117 (45%), Gaps = 9/117 (7%)
Query: 66 RYYFFIDYGNVLFNNDSTL-QANMFTYGVGGD-----FMVAYAKNPINRWAFFFGLQLAA 119
RYY F Y N T Q N+ TYGVG D F ++ +N FF G+QLA
Sbjct: 383 RYYGFFSYNGAGVGNGPTYNQVNLLTYGVGTDVLYNVFSRSFGSRSLNA-GFFGGIQLAG 441
Query: 120 NTWILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKI 176
+T+I + + + + K + R FG+ + + +++ +EIG++I
Sbjct: 442 DTYISTLRNSPQLASRPTATKFQFLFDVGLRM--NFGILKKDLKSHNQHSIEIGVQI 496
Score = 24.3 bits (51), Expect = 2.4
Identities = 12/38 (31%), Positives = 21/38 (54%)
Query: 7 LILSMSFLNILNAENLSYMSSSYQIGTVFMRPLNTNKL 44
L LS+SF + E+ +M+ Y++G V + N K+
Sbjct: 30 LALSLSFNPVGAEEDGGFMTFGYELGQVVQQVKNPGKI 67
>ref|NP_222729.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 41.6 bits (96), Expect = 1e-05
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 42 NKLLQGASILQGYE--VNPKNDWAYSRYYFFIDYGNVLFNNDSTLQAN-MFTYGVGGDFM 98
N + G + GY+ K W RYY F DY + + A+ +FTYGVG D +
Sbjct: 492 NGAMNGIGVQVGYKQFFGEKRRWGL-RYYGFFDYNHAYIKSSFFNSASDVFTYGVGTDVL 550
Query: 99 VAY-----AKNPINRWAFFFGLQLAANTWILNNKVKDLVVNTWDSLK 140
+ KN + F G+ LA +W+ + V N + S K
Sbjct: 551 YNFINDKTTKNSKISFGVFGGIALAGTSWLNSQYVNLATFNNFYSAK 597
Score = 30.0 bits (66), Expect = 0.045
Identities = 17/41 (41%), Positives = 26/41 (62%), Gaps = 1/41 (2%)
Query: 5 RILILSMSFLNILNAE-NLSYMSSSYQIGTVFMRPLNTNKL 44
+ L+LS+S ++LNAE N ++S+ YQIG NT +L
Sbjct: 3 KTLLLSLSASSLLNAEDNGFFISAGYQIGEAAQMVKNTGEL 43
>ref|NP_223575.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 366
Score = 39.7 bits (91), Expect = 6e-05
Identities = 44/163 (26%), Positives = 66/163 (39%), Gaps = 37/163 (22%)
Query: 66 RYYFFIDYGNVLF-----NNDSTLQANMFTYGVGGDFMVAYAKNPINRWA--FFFGLQLA 118
RYY F DYG F D + N YG+G D++ + N + F+ G LA
Sbjct: 213 RYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLFNFIDNAQKHSSVGFYVGFALA 272
Query: 119 ANTWILNNKVKDLVVNTWDSLKDF----------NFHNTYFRAIGKFGVQFRTIVLYHKV 168
++W+ + + W S DF H ++F+ FGV R V H
Sbjct: 273 GSSWVGSG------LGMWVSQMDFINNYLTDYRAKMHTSFFQIPLNFGV--RVNVDRHN- 323
Query: 169 DVEIGMKI------FLTPERRSL-----FERSFLFFVSHSWHF 200
E+G+KI F + L F+R +F VS+ + F
Sbjct: 324 GFEMGLKIPLAVNSFYETHGKGLNASLFFKRLVMFNVSYVYSF 366
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 39.7 bits (91), Expect = 6e-05
Identities = 44/163 (26%), Positives = 66/163 (39%), Gaps = 37/163 (22%)
Query: 66 RYYFFIDYGNVLF-----NNDSTLQANMFTYGVGGDFMVAYAKNPINRWA--FFFGLQLA 118
RYY F DYG F D + N YG+G D++ + N + F+ G LA
Sbjct: 218 RYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLFNFIDNAQKHSSVGFYVGFALA 277
Query: 119 ANTWILNNKVKDLVVNTWDSLKDF----------NFHNTYFRAIGKFGVQFRTIVLYHKV 168
++W+ + + W S DF H ++F+ FGV R V H
Sbjct: 278 GSSWVGSG------LGMWVSQMDFINNYLTDYRAKMHTSFFQIPLNFGV--RVNVDRHN- 328
Query: 169 DVEIGMKI------FLTPERRSL-----FERSFLFFVSHSWHF 200
E+G+KI F + L F+R +F VS+ + F
Sbjct: 329 GFEMGLKIPLAVNSFYETHGKGLNASLFFKRLVMFNVSYVYSF 371
>ref|NP_224150.1| putative OUTER MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 242
Score = 39.3 bits (90), Expect = 7e-05
Identities = 58/244 (23%), Positives = 98/244 (39%), Gaps = 57/244 (23%)
Query: 4 LRILILSMSFLNILNAENLSYMSSSYQIGTVFMRP-LN-----TNKLLQGASILQGYEVN 57
L LI+SM+ ++ ++ + ++ + Y G M +N TN ++G L GY+
Sbjct: 9 LLALIISMNAVSGMDGNGV-FLGAGYLQGQAQMHADINSQKQATNATIKGFDALLGYQFF 67
Query: 58 PKNDWAYSRYYFFIDYG--------NVLFNNDS-----------------------TLQA 86
+ + R Y F DY N +N+++ T +
Sbjct: 68 FEKHFGL-RLYGFFDYAHANSIKLKNPNYNSEAAQVASQILGKQEINRLTNIADPRTFEP 126
Query: 87 NMFTYGVGGDFMVAYAKNPINRWAFFFGLQLAANTWILNNKVKD--LVVNTWDSLKDFNF 144
NM TYG D MV N I F G+QLA N+W++ + LV S K +F
Sbjct: 127 NMLTYGGAMDVMVNVINNGIMSLGAFGGIQLAGNSWLMATPSFEGILVEQALVSKKATSF 186
Query: 145 HNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKI-------FLTPERRSL-FERSFLFFVSH 196
F V R +L H +E G+K ++T + + F R + ++V++
Sbjct: 187 QFL-------FNVGARLRILKHS-SIEAGVKFPMLKKNPYITAKNLDIGFRRVYSWYVNY 238
Query: 197 SWHF 200
+ F
Sbjct: 239 VFTF 242
>ref|NP_223363.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 270
Score = 34.3 bits (77), Expect = 0.002
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 17/106 (16%)
Query: 42 NKLLQGASILQGYE-------VNPKNDWAYSRYYFFIDYGNVLFNND----STLQANMFT 90
N L G + GY+ ++ + W R Y DYG+ + +Q +M +
Sbjct: 79 NGALNGFGLNVGYKKFFQFKSLDMTSKWFGFRVYGLFDYGHADLGKQVYAPNKIQLDMVS 138
Query: 91 YGVGGDFMVAYAKNPINRWAFFFGLQLAANTWILNNKVKDLVVNTW 136
+GVG D + + F G+ + NTW K N W
Sbjct: 139 WGVGSDLLADIIDKDNASFGIFGGVAIGGNTW------KSSAANYW 178
>ref|NP_222795.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 255
Score = 33.9 bits (76), Expect = 0.003
Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 23/156 (14%)
Query: 39 LNTNKLLQ--GASILQGYE--VNPKNDWAYSRY-YFFIDYGNVLFNN------DSTLQAN 87
+NTN Q G + GY+ + + Y Y+ ++ N+ F D Q N
Sbjct: 70 INTNNYGQMYGVDAMAGYKWFFGKTKRFGFRTYGYYSYNHANLSFVGSKLGIMDGASQVN 129
Query: 88 MFTYGVGGDFMVAY--AKNPINRWAFFFGLQLAANTWILNNK-----VKDLVVNTWDSLK 140
FTYGVG D + + +K N F G L +++I+ + + NT
Sbjct: 130 NFTYGVGFDALYNFYESKEGYNTAGLFVGFGLGGDSFIVQGESYLKSQMQICNNTAGCSA 189
Query: 141 DFNFHNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKI 176
N +YF+ +FG FR+ H +E+G K+
Sbjct: 190 SMN--TSYFQMPVEFG--FRSNFSKHS-GIEVGFKL 220
>ref|NP_223566.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 520
Score = 33.5 bits (75), Expect = 0.004
Identities = 31/101 (30%), Positives = 45/101 (43%), Gaps = 12/101 (11%)
Query: 66 RYYFFIDYGNVLFNNDSTLQ-ANMFTYGVGGDFMV-AYAKNPINR---WAFFFGLQLAAN 120
RYY F Y ST ++TYGVG D + ++++ NR FF G+QLA
Sbjct: 374 RYYGFFSYNGASVGFRSTQNNVGLYTYGVGTDVLYNIFSRSYQNRSVDMGFFSGIQLAGE 433
Query: 121 TWIL------NNKVKDLVVNT-WDSLKDFNFHNTYFRAIGK 154
T+ N K+ + NT + L DF + + GK
Sbjct: 434 TFQSTLRDDPNVKLHGKINNTHFQFLFDFGMRMNFGKLDGK 474
>ref|NP_223450.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 278
Score = 29.6 bits (65), Expect = 0.058
Identities = 41/186 (22%), Positives = 68/186 (36%), Gaps = 46/186 (24%)
Query: 49 SILQGY-EVNPKNDWAYSRYYFFIDYGNVLFNNDS-----TLQA---------------- 86
S++ GY + PK + R+Y +DY F + +L+A
Sbjct: 105 SLIYGYKQFFPKKEHYGFRFYVSLDYAYGFFLKNKGALGDSLRASSQIPKSYREKLQRKE 164
Query: 87 ---NMFTYGVGGDFMVAYAKNPINRWAFFFGLQLAANTWILNNKVKDLVVNTW--DSLKD 141
N YGVG DF+ A + G+ TW K + W DSL
Sbjct: 165 TFINAIFYGVGADFLYKRAFGTL-----ILGVNFVGETWFYETK----IFKQWAKDSLN- 214
Query: 142 FNFHNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKI-------FLTPERRSLFERSFLFFV 194
+ F+ + G ++R Y +E G +I F TP F+R+ ++
Sbjct: 215 -TYRPNMFQVMLNVGYRYR-FSRYKNWAIEFGARIPFLINDYFKTPLYTLHFKRNISVYL 272
Query: 195 SHSWHF 200
+ ++ F
Sbjct: 273 TSTYDF 278
>ref|NP_223299.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 307
Score = 27.3 bits (59), Expect = 0.29
Identities = 15/46 (32%), Positives = 25/46 (53%), Gaps = 9/46 (19%)
Query: 114 GLQLAANTWILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQF 159
G++L A+TW +N + ++ +K T F+ GKFGV+F
Sbjct: 208 GMELGASTWFASNNL-----TPFNQVKS----RTIFQLQGKFGVRF 244
>ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROTEIN [Helicobacter pylori
J99]
Length = 605
Score = 26.9 bits (58), Expect = 0.38
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 20/87 (22%)
Query: 15 NILNAENLSYMSSSYQIGTVFMRPLNTNKLLQGASILQGYEVNPKNDWAYSRYYFFIDYG 74
NI N L Y S+ + T+F L+ +N K+ A R Y G
Sbjct: 25 NIANVNTLGYRSNDPEFKTLFSSHLDA--------------LNAKSVVANDRNYGVTGSG 70
Query: 75 NVLFNNDSTLQANMFTYGVGGDFMVAY 101
NVL N D + G+F +AY
Sbjct: 71 NVLSNKDGEYMPS------EGEFHMAY 91
>ref|NP_223856.1| putative role in outermembrane permeability [Helicobacter pylori
J99]
Length = 766
Score = 26.2 bits (56), Expect = 0.64
Identities = 14/39 (35%), Positives = 20/39 (50%)
Query: 24 YMSSSYQIGTVFMRPLNTNKLLQGASILQGYEVNPKNDW 62
+MS+S + T F+ P L G LQ + + PKN W
Sbjct: 202 FMSTSNKRTTGFLYPEFGTSNLDGFIYLQPFYLAPKNSW 240
>ref|NP_223263.1| 8-amino-7-oxononanoate synthase [Helicobacter pylori J99]
Length = 373
Score = 23.9 bits (50), Expect = 3.2
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 118 AANTWILNNKVKDLVVNTWDSLKDFNFHN 146
A+N ++ + KDL+ N +D L+ F+ H+
Sbjct: 29 ASNDYLGLSVKKDLLQNAFDKLQSFDCHS 57
>ref|NP_223381.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 305
Score = 23.5 bits (49), Expect = 4.2
Identities = 15/63 (23%), Positives = 30/63 (46%), Gaps = 6/63 (9%)
Query: 125 NNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKIFLTPERRS 184
+N LV+ S +DF F+N +F A G + ++ + ++ +K+ L E+
Sbjct: 146 SNAQGSLVLQKTPSPQDFLFNNGHFMAFG------LNVNMFVNLPIDTLLKLALKTEKML 199
Query: 185 LFE 187
F+
Sbjct: 200 FFK 202
>ref|NP_223656.1| putative [Helicobacter pylori J99]
Length = 337
Score = 22.7 bits (47), Expect = 7.1
Identities = 13/44 (29%), Positives = 22/44 (49%), Gaps = 2/44 (4%)
Query: 91 YGVGGDFMVAYAKNPINRWAFFFGLQLAANTWILNNKVKDLVVN 134
Y +G + + +K PI++ FFG TW NK+ + + N
Sbjct: 270 YVMGCNMEIDGSKYPIHKDWGFFGKAKVPETW--RNKIWECIKN 311
>ref|NP_224162.1| ELONGATION FACTOR TS (EF-TS) [Helicobacter pylori J99]
Length = 355
Score = 22.3 bits (46), Expect = 9.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 125 NNKVKDLVVNTWDSLKDFNFHNT 147
N K+LV T +++K N H T
Sbjct: 88 NEGFKELVKKTLETIKTHNIHTT 110
>ref|NP_223979.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 22.3 bits (46), Expect = 9.3
Identities = 10/21 (47%), Positives = 11/21 (51%)
Query: 24 YMSSSYQIGTVFMRPLNTNKL 44
YMS YQIG + NT L
Sbjct: 27 YMSVGYQIGEAVQKVKNTGAL 47
>ref|NP_223820.1| putative Outer membrane function [Helicobacter pylori J99]
Length = 643
Score = 22.3 bits (46), Expect = 9.3
Identities = 13/42 (30%), Positives = 26/42 (60%), Gaps = 2/42 (4%)
Query: 5 RILILSMSFL-NILNAE-NLSYMSSSYQIGTVFMRPLNTNKL 44
+ ++LS++ ++L+AE N ++S YQIG + N +K+
Sbjct: 6 KTILLSLTLAASLLHAEDNGVFLSVGYQIGEAVQKVKNADKV 47
>ref|NP_223511.1| ADP-L-GLYCERO-D-MANNOHEPTOSE-6-EPIMERASE [Helicobacter pylori J99]
Length = 329
Score = 22.3 bits (46), Expect = 9.3
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 95 GDFMVAYAKNP 105
GDF V+Y KNP
Sbjct: 272 GDFKVSYIKNP 282
>ref|NP_222933.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 22.3 bits (46), Expect = 9.3
Identities = 10/21 (47%), Positives = 11/21 (51%)
Query: 24 YMSSSYQIGTVFMRPLNTNKL 44
YMS YQIG + NT L
Sbjct: 27 YMSVGYQIGEAVQKVKNTGAL 47
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.328 0.141 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 219,869
Number of Sequences: 1491
Number of extensions: 10414
Number of successful extensions: 92
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 41
length of query: 200
length of database: 494,079
effective HSP length: 73
effective length of query: 127
effective length of database: 385,236
effective search space: 48924972
effective search space used: 48924972
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)