BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645684|ref|NP_207861.1| hypothetical protein
[Helicobacter pylori 26695]
(84 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223074.1| putative [Helicobacter pylori J99] 147 3e-38
ref|NP_223812.1| putative [Helicobacter pylori J99] 23 0.83
ref|NP_224060.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_223927.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_223602.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT B [H... 22 1.8
ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPH... 22 1.8
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 22 3.1
ref|NP_224153.1| putative [Helicobacter pylori J99] 22 3.1
ref|NP_223361.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 22 3.1
ref|NP_222872.1| putative histidine kinase sensor protein [... 22 3.1
ref|NP_222870.1| putative [Helicobacter pylori J99] 22 3.1
ref|NP_223847.1| abc transporter, ATP-binding protein [Heli... 21 4.1
ref|NP_223018.1| putative [Helicobacter pylori J99] 21 5.4
ref|NP_224114.1| putative component of cation transport for... 20 7.0
ref|NP_223830.1| putative [Helicobacter pylori J99] 20 9.2
ref|NP_223549.1| putative [Helicobacter pylori J99] 20 9.2
ref|NP_223343.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 20 9.2
ref|NP_223138.1| putative [Helicobacter pylori J99] 20 9.2
ref|NP_222756.1| DNA transformation competancy [Helicobacte... 20 9.2
>ref|NP_223074.1| putative [Helicobacter pylori J99]
Length = 86
Score = 147 bits (372), Expect = 3e-38
Identities = 73/86 (84%), Positives = 77/86 (88%), Gaps = 2/86 (2%)
Query: 1 MLAYKQIFDKGLKPYYKHSVCLKLFFRFCFLKTHAYQQRYQAFALTLFSCKFFNACKIFL 60
M + KQIFDKGLKPYYKHSVCLK FFRFCFLK HAYQQRY+AFALTLFSCKFFNACKIF+
Sbjct: 1 MRSCKQIFDKGLKPYYKHSVCLKPFFRFCFLKIHAYQQRYRAFALTLFSCKFFNACKIFI 60
Query: 61 LAIGFKIVFIPIL--EAKLKRVSNAY 84
I FKIVFIPIL +AKLKRVSNAY
Sbjct: 61 PIIDFKIVFIPILKHQAKLKRVSNAY 86
>ref|NP_223812.1| putative [Helicobacter pylori J99]
Length = 687
Score = 23.5 bits (49), Expect = 0.83
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 44 ALTLFSCKFFNACKIFLLAIGFKIVFIPILEAKLKRVSNAY 84
AL FFN +L + F +V + +L ++ SNAY
Sbjct: 629 ALKTLQKSFFNHAIDAILCVFFMLVALLVLIVSVRICSNAY 669
>ref|NP_224060.1| putative [Helicobacter pylori J99]
Length = 118
Score = 22.7 bits (47), Expect = 1.4
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 36 YQQRYQAFALTLFSCKFFNACKIFLL 61
YQ+ + AF T SC+F+ C + L
Sbjct: 20 YQRFFSAF--TFSSCRFYPTCSNYAL 43
>ref|NP_223927.1| putative [Helicobacter pylori J99]
Length = 161
Score = 22.3 bits (46), Expect = 1.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 35 AYQQRYQAFALTLFSCKFFNA 55
++Q RY F +F +FF A
Sbjct: 76 SFQVRYPRFLKAIFKARFFGA 96
>ref|NP_223602.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT B [Helicobacter pylori J99]
Length = 289
Score = 22.3 bits (46), Expect = 1.8
Identities = 10/28 (35%), Positives = 16/28 (56%), Gaps = 7/28 (25%)
Query: 1 MLAYKQIFDKGLKPYYKHSVCLKLFFRF 28
++ YK++F K +SVCLK + F
Sbjct: 37 LMYYKEVFGK-------YSVCLKCHYHF 57
>ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE
[Helicobacter pylori J99]
Length = 776
Score = 22.3 bits (46), Expect = 1.8
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 3 AYKQIFDKGLKPYYKHSVCLKLFFRFC 29
++K + K +PY H +C+ FC
Sbjct: 52 SHKGQYRKSGEPYIVHPICVASVVAFC 78
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 21.6 bits (44), Expect = 3.1
Identities = 10/12 (83%), Positives = 11/12 (91%), Gaps = 1/12 (8%)
Query: 13 KPYYKHSVCLKL 24
KP+YKHSV LKL
Sbjct: 555 KPFYKHSV-LKL 565
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 21.6 bits (44), Expect = 3.1
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 68 VFIPILEAKLKRVSNAY 84
+F+P+ +K+KR N Y
Sbjct: 313 MFMPVKNSKIKRPMNGY 329
>ref|NP_223361.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 381
Score = 21.6 bits (44), Expect = 3.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 70 IPILEAKLKRVSNAY 84
+PI E KLK V AY
Sbjct: 315 LPIAEIKLKEVCEAY 329
>ref|NP_222872.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 442
Score = 21.6 bits (44), Expect = 3.1
Identities = 8/15 (53%), Positives = 12/15 (79%)
Query: 5 KQIFDKGLKPYYKHS 19
K+ F+K L+PY+K S
Sbjct: 349 KEDFEKYLQPYFKSS 363
>ref|NP_222870.1| putative [Helicobacter pylori J99]
Length = 240
Score = 21.6 bits (44), Expect = 3.1
Identities = 9/22 (40%), Positives = 17/22 (76%)
Query: 60 LLAIGFKIVFIPILEAKLKRVS 81
LL GF+ + +PI++A L+R++
Sbjct: 184 LLNEGFESLRLPIIKAGLQRIA 205
>ref|NP_223847.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 578
Score = 21.2 bits (43), Expect = 4.1
Identities = 8/29 (27%), Positives = 14/29 (47%)
Query: 15 YYKHSVCLKLFFRFCFLKTHAYQQRYQAF 43
++ V L FF FC + + ++ Y F
Sbjct: 81 HFSSPVRLMYFFSFCLVGIYLFRMFYGVF 109
>ref|NP_223018.1| putative [Helicobacter pylori J99]
Length = 381
Score = 20.8 bits (42), Expect = 5.4
Identities = 10/39 (25%), Positives = 18/39 (45%)
Query: 32 KTHAYQQRYQAFALTLFSCKFFNACKIFLLAIGFKIVFI 70
K A + F+ +F F IFL +G+ ++F+
Sbjct: 319 KHFAKASSWVVFSFGIFQALFSYLFTIFLGDLGYVLIFV 357
>ref|NP_224114.1| putative component of cation transport for cbb3-type oxidase
[Helicobacter pylori J99]
Length = 788
Score = 20.4 bits (41), Expect = 7.0
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 11/56 (19%)
Query: 34 HAYQQRYQAFALTLFSCKFFNACKIFL-------LAIGF----KIVFIPILEAKLK 78
H + YQ L + S KF NA + L + +GF + + ILE +LK
Sbjct: 566 HGLKASYQNETLLVGSLKFLNAMGVDLKVKESANIMVGFAKNKTLCALFILEERLK 621
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 20.0 bits (40), Expect = 9.2
Identities = 13/57 (22%), Positives = 22/57 (37%), Gaps = 2/57 (3%)
Query: 2 LAYKQIFDKGLKPYYKHS--VCLKLFFRFCFLKTHAYQQRYQAFALTLFSCKFFNAC 56
+A+ + +K K S +C + +LKTH A +T + N C
Sbjct: 37 IAFWEAIKDSIKKQIKKSDWICGNVKTADDYLKTHPNSWFNSAIGVTAITAMLMNVC 93
>ref|NP_223549.1| putative [Helicobacter pylori J99]
Length = 90
Score = 20.0 bits (40), Expect = 9.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 8 FDKGLKPYYKHSVCLKLFFR 27
FDK LK K+ LKL ++
Sbjct: 10 FDKDLKILVKNGFDLKLLYK 29
>ref|NP_223343.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 248
Score = 20.0 bits (40), Expect = 9.2
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 5 KQIFDKGLKPY 15
K+ +D G+KPY
Sbjct: 108 KKAYDTGIKPY 118
>ref|NP_223138.1| putative [Helicobacter pylori J99]
Length = 495
Score = 20.0 bits (40), Expect = 9.2
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 40 YQAFALTLFSCKFFNACKIFLLAIGFKIVFIP 71
+ A+A L + + K++L +G K++ +P
Sbjct: 238 FNAYAKHLNAQALLKSAKLYLERMGQKVIDLP 269
>ref|NP_222756.1| DNA transformation competancy [Helicobacter pylori J99]
Length = 247
Score = 20.0 bits (40), Expect = 9.2
Identities = 12/39 (30%), Positives = 17/39 (42%)
Query: 36 YQQRYQAFALTLFSCKFFNACKIFLLAIGFKIVFIPILE 74
Y++RY+ LF F+ + GFKI I E
Sbjct: 201 YEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITE 239
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.339 0.149 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,378
Number of Sequences: 1491
Number of extensions: 3567
Number of successful extensions: 22
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 19
length of query: 84
length of database: 494,079
effective HSP length: 60
effective length of query: 24
effective length of database: 404,619
effective search space: 9710856
effective search space used: 9710856
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 40 (20.0 bits)