BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644738|ref|NP_206908.1| hypothetical protein
[Helicobacter pylori 26695]
(186 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222821.1| putative [Helicobacter pylori J99] 249 3e-68
ref|NP_224044.1| putative [Helicobacter pylori J99] 25 0.98
ref|NP_224073.1| putative motility protein [Helicobacter py... 24 2.8
ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylo... 24 2.8
ref|NP_223437.1| putative Outer membrane protein [Helicobac... 24 2.8
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 24 2.8
ref|NP_222914.1| putative [Helicobacter pylori J99] 23 4.8
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 22 8.3
ref|NP_223858.1| GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE [Hel... 22 8.3
ref|NP_222965.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 22 8.3
>ref|NP_222821.1| putative [Helicobacter pylori J99]
Length = 152
Score = 249 bits (636), Expect = 3e-68
Identities = 119/153 (77%), Positives = 133/153 (86%), Gaps = 2/153 (1%)
Query: 25 MKTIEWNEEQRKAFQDLLREFTALIDAKAQEEKQTGRTPKIPKYGSCQNGLNKFLAPWGY 84
M+TIEWNEEQRKAFQDLLREF ALIDAK QE+KQ G+ PKIPKY SCQNGLNKFLAPWGY
Sbjct: 1 METIEWNEEQRKAFQDLLREFVALIDAKVQEKKQMGKKPKIPKYASCQNGLNKFLAPWGY 60
Query: 85 ACKISPGSHGRLSYKPSIAFCRQDILGEGFVNGEIPTPTKGFYIWLAYYWHNDAKKFHLC 144
ACKIS G+ G LS++PSIAFCRQDILGEGFVNGE PTPTKGFY+W AYYW ND +K LC
Sbjct: 61 ACKISLGT-GLLSHEPSIAFCRQDILGEGFVNGEKPTPTKGFYLWFAYYWRNDLEKIDLC 119
Query: 145 IGRSIEENGEKECQKCLAYDKIIDPDGDAYYQE 177
IGRS EE+ ++ECQKCLAYDKII P+ + Y+E
Sbjct: 120 IGRSDEEDKKEECQKCLAYDKII-PNRNECYRE 151
>ref|NP_224044.1| putative [Helicobacter pylori J99]
Length = 792
Score = 25.4 bits (54), Expect = 0.98
Identities = 13/36 (36%), Positives = 18/36 (49%)
Query: 28 IEWNEEQRKAFQDLLREFTALIDAKAQEEKQTGRTP 63
I W E +R F DL + FT L+ + + T TP
Sbjct: 16 ILWGEAKRGDFDDLDKAFTQLLLTIGKHKLYTHHTP 51
>ref|NP_224073.1| putative motility protein [Helicobacter pylori J99]
Length = 195
Score = 23.9 bits (50), Expect = 2.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 29 EWNEEQRKAFQDLLREFTALIDAKAQEEKQ 58
E EEQ + L E I+AK QE+K+
Sbjct: 59 EHEEEQDSSLNTALPEDKTAIEAKEQEQKE 88
>ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 946
Score = 23.9 bits (50), Expect = 2.8
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 31 NEEQRKAFQDLLREFTALIDAKA---QEEKQTGR 61
NE +RKAF++L+ E ++ + + E TGR
Sbjct: 452 NEAERKAFENLVSEMFLMVSKSSGSIKAEHGTGR 485
>ref|NP_223437.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 455
Score = 23.9 bits (50), Expect = 2.8
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 123 TKGFYIWLAYYWHNDAKKFHLCIGR 147
T+ + ++ +Y +++ KFHL +GR
Sbjct: 139 TRNYVLYNSYLFYSYGDKFHLKLGR 163
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 23.9 bits (50), Expect = 2.8
Identities = 11/41 (26%), Positives = 21/41 (50%), Gaps = 6/41 (14%)
Query: 144 CIGRSIEENGEKECQKCLAYDKIIDPDGDAYYQESYDDLKS 184
C+ R+ E +KEC +K++ P+ +ES +K+
Sbjct: 1132 CVSRARNEKEKKEC------EKLLTPEARKLLEESKKSVKA 1166
Score = 23.1 bits (48), Expect = 4.8
Identities = 11/46 (23%), Positives = 23/46 (49%), Gaps = 6/46 (13%)
Query: 139 KKFHLCIGRSIEENGEKECQKCLAYDKIIDPDGDAYYQESYDDLKS 184
K + C+ R+ E ++EC +K++ P+ +ES +K+
Sbjct: 836 KAYKDCVSRARNEKEKQEC------EKLLTPEARKLLEESKKSVKA 875
Score = 22.3 bits (46), Expect = 8.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 139 KKFHLCIGRSIEENGEKECQKCL 161
K + C+ R+ E ++EC+K L
Sbjct: 1019 KAYKDCVSRARNEKEKQECEKLL 1041
Score = 22.3 bits (46), Expect = 8.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 139 KKFHLCIGRSIEENGEKECQKCL 161
K + C+ R+ E ++EC+K L
Sbjct: 507 KAYKDCVSRARNEKEKQECEKLL 529
Score = 22.3 bits (46), Expect = 8.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 139 KKFHLCIGRSIEENGEKECQKCL 161
K + C+ R+ E ++EC+K L
Sbjct: 1203 KAYKDCVSRARNEKEKQECEKLL 1225
Score = 22.3 bits (46), Expect = 8.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 139 KKFHLCIGRSIEENGEKECQKCL 161
K + C+ R+ E ++EC+K L
Sbjct: 912 KAYKDCVSRARNEKEKQECEKLL 934
>ref|NP_222914.1| putative [Helicobacter pylori J99]
Length = 368
Score = 23.1 bits (48), Expect = 4.8
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 139 KKFHLCIGRSIEENGEKECQKCLAYDKIIDPDGDAYYQESYD 180
KK H+ I +E G C+ C +I + + E+Y+
Sbjct: 256 KKLHIPIAGIVENMGSFVCEHCKKESEIFGSNSMSGLLEAYN 297
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 22.3 bits (46), Expect = 8.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 155 KECQKCLAYDKIIDPDGDAYYQE 177
K+ QK L DK D D + YYQ+
Sbjct: 233 KQIQKELGTDKQRDEDLNQYYQK 255
>ref|NP_223858.1| GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE [Helicobacter pylori J99]
Length = 424
Score = 22.3 bits (46), Expect = 8.3
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 102 IAFCRQDILGEGFVNGEIPT---PTKGFYIWLAYYWHNDAKKFHLCIGRSIEENG 153
+ F ++ ++ V+ PT P + YI D KK HL +G ++NG
Sbjct: 320 LVFSKEFVMSVALVSRNYPTSSSPKQTLYIDPV-----DEKKGHLILGEVEQDNG 369
>ref|NP_222965.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 390
Score = 22.3 bits (46), Expect = 8.3
Identities = 13/44 (29%), Positives = 22/44 (49%), Gaps = 3/44 (6%)
Query: 143 LCIGRSIEENGEKECQKCLAYDKIIDPDGDAYYQESYDDLKSPS 186
L + I+E +KE L ++D G+ Y+ + DL +PS
Sbjct: 164 LILKEQIKELSQKEHFNFLKNYNLVDEKGEIYFAK---DLSTPS 204
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.139 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 208,018
Number of Sequences: 1491
Number of extensions: 9103
Number of successful extensions: 35
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 24
length of query: 186
length of database: 494,079
effective HSP length: 73
effective length of query: 113
effective length of database: 385,236
effective search space: 43531668
effective search space used: 43531668
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)