BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645687|ref|NP_207864.1| copper ion binding protein
(copP) [Helicobacter pylori 26695]
(66 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223071.1| copper-associated protein [Helicobacter py... 127 6e-32
ref|NP_223072.1| COPPER-TRANSPORTING P-TYPE ATPASE [Helicob... 35 2e-04
ref|NP_224114.1| putative component of cation transport for... 22 3.4
ref|NP_223982.1| PHOSPHOGLYCERATE KINASE [Helicobacter pylo... 22 3.4
ref|NP_223368.1| putative [Helicobacter pylori J99] 22 3.4
ref|NP_223391.1| putative aminotransferase [Helicobacter py... 21 5.7
ref|NP_223068.1| putative [Helicobacter pylori J99] 21 5.7
ref|NP_224206.1| putative UNDECAPRENYL-PHOSPHATE-ALPHA-N-AC... 20 9.8
ref|NP_223359.1| DNA GYRASE SUBUNIT A [Helicobacter pylori ... 20 9.8
ref|NP_223055.1| putative [Helicobacter pylori J99] 20 9.8
>ref|NP_223071.1| copper-associated protein [Helicobacter pylori J99]
Length = 66
Score = 127 bits (318), Expect = 6e-32
Identities = 63/66 (95%), Positives = 63/66 (95%)
Query: 1 MKATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLD 60
MK TFQVPSITCNHCVDKIEKFVGEIEGVSFID SVEKKSVVVEFD PATQDLIKEALLD
Sbjct: 1 MKVTFQVPSITCNHCVDKIEKFVGEIEGVSFIDASVEKKSVVVEFDTPATQDLIKEALLD 60
Query: 61 AGQEVV 66
AGQEVV
Sbjct: 61 AGQEVV 66
>ref|NP_223072.1| COPPER-TRANSPORTING P-TYPE ATPASE [Helicobacter pylori J99]
Length = 745
Score = 35.4 bits (80), Expect = 2e-04
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 1 MKATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPAT 50
MK +F + +TC C IE+ +G V I+VS+ KS +EF+ T
Sbjct: 1 MKESFYIEGMTCTACSSGIERSLGRKSFVKKIEVSLLNKSANIEFNENET 50
>ref|NP_224114.1| putative component of cation transport for cbb3-type oxidase
[Helicobacter pylori J99]
Length = 788
Score = 21.6 bits (44), Expect = 3.4
Identities = 9/35 (25%), Positives = 18/35 (50%)
Query: 12 CNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFD 46
CN C+ +K + ++GV + V+ + + FD
Sbjct: 93 CNACLWLNQKVLERLKGVKKVSVNFTTHHLQIVFD 127
>ref|NP_223982.1| PHOSPHOGLYCERATE KINASE [Helicobacter pylori J99]
Length = 402
Score = 21.6 bits (44), Expect = 3.4
Identities = 7/32 (21%), Positives = 20/32 (61%)
Query: 22 FVGEIEGVSFIDVSVEKKSVVVEFDAPATQDL 53
F+ ++ + +DV+ ++ + V+F+ P ++L
Sbjct: 7 FMQNVKNIQEVDVNHKRVLIRVDFNVPLDENL 38
>ref|NP_223368.1| putative [Helicobacter pylori J99]
Length = 406
Score = 21.6 bits (44), Expect = 3.4
Identities = 8/26 (30%), Positives = 17/26 (64%)
Query: 13 NHCVDKIEKFVGEIEGVSFIDVSVEK 38
+HC+ +IEK + + SF+ + V++
Sbjct: 280 DHCIKEIEKKEMQNKVYSFVSLGVQE 305
>ref|NP_223391.1| putative aminotransferase [Helicobacter pylori J99]
Length = 369
Score = 20.8 bits (42), Expect = 5.7
Identities = 10/24 (41%), Positives = 14/24 (57%)
Query: 35 SVEKKSVVVEFDAPATQDLIKEAL 58
S++ +V E+D PA D I AL
Sbjct: 94 SIKAHELVYEWDTPAQVDGILNAL 117
>ref|NP_223068.1| putative [Helicobacter pylori J99]
Length = 173
Score = 20.8 bits (42), Expect = 5.7
Identities = 7/27 (25%), Positives = 16/27 (58%)
Query: 19 IEKFVGEIEGVSFIDVSVEKKSVVVEF 45
++K +G++E F ++EK + +F
Sbjct: 7 LQKHLGDVETSDFKTNAIEKSQQIAKF 33
>ref|NP_224206.1| putative UNDECAPRENYL-PHOSPHATE-ALPHA-N-
ACETYLGLUCOSAMINYLTRANSFERASE [Helicobacter pylori J99]
Length = 335
Score = 20.0 bits (40), Expect = 9.8
Identities = 7/18 (38%), Positives = 14/18 (76%)
Query: 22 FVGEIEGVSFIDVSVEKK 39
F+G + G+S + +S+E+K
Sbjct: 204 FLGLVCGISLLHLSLEQK 221
>ref|NP_223359.1| DNA GYRASE SUBUNIT A [Helicobacter pylori J99]
Length = 828
Score = 20.0 bits (40), Expect = 9.8
Identities = 11/36 (30%), Positives = 18/36 (49%)
Query: 31 FIDVSVEKKSVVVEFDAPATQDLIKEALLDAGQEVV 66
F V K++ + EF + I+ +LD G E+V
Sbjct: 617 FTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELV 652
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 20.0 bits (40), Expect = 9.8
Identities = 6/25 (24%), Positives = 17/25 (68%)
Query: 20 EKFVGEIEGVSFIDVSVEKKSVVVE 44
+++V ++E + F D ++KK +++
Sbjct: 138 DRYVKKLEELGFYDKIMQKKPTILK 162
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.135 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,586
Number of Sequences: 1491
Number of extensions: 1946
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 66
length of database: 494,079
effective HSP length: 42
effective length of query: 24
effective length of database: 431,457
effective search space: 10354968
effective search space used: 10354968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 40 (20.0 bits)