BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645690|ref|NP_207867.1| hypothetical protein
[Helicobacter pylori 26695]
(171 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223068.1| putative [Helicobacter pylori J99] 309 3e-86
ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobact... 28 0.10
ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobact... 28 0.13
ref|NP_223418.1| FUNCTIONAL HOMOLOG OF SRP RECEPTOR [Helico... 27 0.30
ref|NP_223560.1| putative [Helicobacter pylori J99] 27 0.39
ref|NP_223234.1| putative [Helicobacter pylori J99] 26 0.66
ref|NP_223111.1| RNA POLYMERASE SIGMA FACTOR (sigma 28) [He... 26 0.66
ref|NP_223055.1| putative [Helicobacter pylori J99] 26 0.66
ref|NP_222745.1| ISOCITRATE DEHYDROGENASE [Helicobacter pyl... 25 0.86
ref|NP_223800.1| putative Outer membrane protein [Helicobac... 25 1.1
ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter p... 25 1.5
ref|NP_223695.1| PHENYLALANYL-TRNA SYNTHETASE ALPHA CHAIN [... 24 2.5
ref|NP_223575.1| putative Outer membrane protein [Helicobac... 24 2.5
ref|NP_223203.1| cag island protein [Helicobacter pylori J99] 24 2.5
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 24 2.5
ref|NP_223563.1| putative [Helicobacter pylori J99] 23 3.3
ref|NP_223425.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 23 3.3
ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99] 23 3.3
ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter p... 23 4.3
ref|NP_223598.1| putative [Helicobacter pylori J99] 23 4.3
ref|NP_223664.1| putative [Helicobacter pylori J99] 23 5.6
ref|NP_223520.1| putative [Helicobacter pylori J99] 23 5.6
ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pyl... 22 7.3
ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 22 7.3
ref|NP_223489.1| putative spermidine synthase [Helicobacter... 22 7.3
ref|NP_223364.1| putative [Helicobacter pylori J99] 22 7.3
ref|NP_223673.1| putative [Helicobacter pylori J99] 22 9.5
ref|NP_223071.1| copper-associated protein [Helicobacter py... 22 9.5
>ref|NP_223068.1| putative [Helicobacter pylori J99]
Length = 173
Score = 309 bits (791), Expect = 3e-86
Identities = 163/173 (94%), Positives = 167/173 (96%), Gaps = 2/173 (1%)
Query: 1 MDILKTLQKHLGDVETSDFTTNAIEKSQQIAKFSRDMKNINESVGALQVLQIACKKLFNK 60
MDILKTLQKHLGDVETSDF TNAIEKSQQIAKFSRDMKNINESVGALQVLQIACKKL NK
Sbjct: 1 MDILKTLQKHLGDVETSDFKTNAIEKSQQIAKFSRDMKNINESVGALQVLQIACKKLLNK 60
Query: 61 SMGLEDKDALQASIIKQELREIVENCQFLASPLFDTQLNIAINDEIFSMIVVNPLDLLEN 120
SMGLEDKDALQASIIKQELREIVENCQFLASPLFDTQLNIAINDE+FSMIV NPL+LLEN
Sbjct: 61 SMGLEDKDALQASIIKQELREIVENCQFLASPLFDTQLNIAINDEVFSMIVDNPLNLLEN 120
Query: 121 VGEFQAYLEEKLNEIKELLGYLSESLSNPKAFMP--SFSNQSLKDLLSDNLRA 171
VG FQAYLEEKLNEIKELLGYLSESLSNPKAFMP SFSN+SLKDLLSD+LRA
Sbjct: 121 VGGFQAYLEEKLNEIKELLGYLSESLSNPKAFMPKQSFSNKSLKDLLSDDLRA 173
>ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobacter pylori J99]
Length = 414
Score = 28.5 bits (62), Expect = 0.10
Identities = 17/49 (34%), Positives = 27/49 (54%), Gaps = 5/49 (10%)
Query: 95 DTQLNIAINDEIFSMIVVNPLDLLENVGEFQAYLEEKLNEIKELLGYLS 143
D ++ + +NDE + I L EN + YL+EKL E K+L+ L+
Sbjct: 228 DNEMIVRLNDESYPTI-----SLEENRFKDSDYLKEKLKEAKDLIDALN 271
>ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobacter pylori J99]
Length = 644
Score = 28.1 bits (61), Expect = 0.13
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 24/131 (18%)
Query: 26 KSQQIAKFSRDMKNINESVGAL------QVLQIACKKLFNKSMGLEDK-----DALQASI 74
K + IA F + N + ++ A Q++ I K+ F K + L+ + + +
Sbjct: 93 KKRPIAFFKAALLNADHAMIAYLAKEKNQIVAIPFKEPFKKPISLKHSQRSLLELPRHCV 152
Query: 75 IKQEL--REIVENCQFLASPLFDTQLNIAINDEI--FSMIVVNPLDLLENVGEFQAYLEE 130
+K +L REI E L PL D L++++ D I FS + LDL Q Y +
Sbjct: 153 VKIDLKKREISEILGALEDPLIDENLSLSLFDRIKDFSK---DCLDLA------QYYAQL 203
Query: 131 KLNEIKELLGY 141
K ++ K+ + Y
Sbjct: 204 KASDFKDRINY 214
>ref|NP_223418.1| FUNCTIONAL HOMOLOG OF SRP RECEPTOR [Helicobacter pylori J99]
Length = 293
Score = 26.9 bits (58), Expect = 0.30
Identities = 13/29 (44%), Positives = 19/29 (64%)
Query: 55 KKLFNKSMGLEDKDALQASIIKQELREIV 83
KK+ NK G E K+ + S+ K+EL EI+
Sbjct: 6 KKIVNKIKGEEVKEKKRESVPKEELEEIL 34
Score = 22.3 bits (46), Expect = 7.3
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 2 DILKTLQKHLGDVET 16
D++++L KHLGD+ T
Sbjct: 42 DLIESLLKHLGDLIT 56
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 26.6 bits (57), Expect = 0.39
Identities = 19/74 (25%), Positives = 34/74 (45%)
Query: 25 EKSQQIAKFSRDMKNINESVGALQVLQIACKKLFNKSMGLEDKDALQASIIKQELREIVE 84
EK+++I+ K N S ++Q Q + K NKS ++ +KQE++E
Sbjct: 346 EKTKEISDNKEKAKETNSSAQSVQNTQASDKTSDNKSTTPKETIRHFTQQLKQEIQEYKP 405
Query: 85 NCQFLASPLFDTQL 98
++ LF +L
Sbjct: 406 PMSKISMDLFPKEL 419
>ref|NP_223234.1| putative [Helicobacter pylori J99]
Length = 366
Score = 25.8 bits (55), Expect = 0.66
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 38/160 (23%)
Query: 7 LQKHLGDVETSDFTTNAIEKSQQIAKFSRDMKNINESVGALQV----------------- 49
L+ L D+ T D I++ Q+ K S+D KN+ E +L+
Sbjct: 131 LELILADIATLD---KRIDRLQKALKSSKDAKNLLECALSLKTHLEELKPAKTFPLNTSE 187
Query: 50 ----LQIACKKLFNKSM------GLEDKDALQASIIKQELREIVENCQFLASPLFDTQLN 99
L + L +K M G ED + L K E V+N +F+A L
Sbjct: 188 AFLELDKELRFLSHKKMIYVANVGEEDLNILNEHAKKVENHAKVQNSEFVA-------LC 240
Query: 100 IAINDEIFSMIVVNPLDLLENVGEFQAYLEEKLN-EIKEL 138
+ +E+ SM + L+++G ++ LE+ + KEL
Sbjct: 241 AKLEEEMVSMSGDEVKEFLQSLGVEESGLEKTIRLSFKEL 280
>ref|NP_223111.1| RNA POLYMERASE SIGMA FACTOR (sigma 28) [Helicobacter pylori J99]
Length = 255
Score = 25.8 bits (55), Expect = 0.66
Identities = 25/85 (29%), Positives = 35/85 (40%), Gaps = 16/85 (18%)
Query: 77 QELREIVENCQFLASPLFDTQLNIAINDEIFSMIVVNPLDLLENVGE------------F 124
+++RE A D Q N DEI I +LLE++ +
Sbjct: 154 EKIREAKTASDIYALVPIDEQFNAIEQDEITQKIEAE--ELLEHIQKVLNQMSEREQILI 211
Query: 125 QAYLEEKLN--EIKELLGYLSESLS 147
Q Y E+LN EIKE+LG +S
Sbjct: 212 QLYYFEELNLSEIKEILGITESRIS 236
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 25.8 bits (55), Expect = 0.66
Identities = 17/70 (24%), Positives = 31/70 (44%)
Query: 95 DTQLNIAINDEIFSMIVVNPLDLLENVGEFQAYLEEKLNEIKELLGYLSESLSNPKAFMP 154
D L+ + E+ MI + LE +G + +++K +KE + S + FM
Sbjct: 121 DIYLDYEKHLEVLEMIYDRYVKKLEELGFYDKIMQKKPTILKEFFEHFSSIEWHLDGFMS 180
Query: 155 SFSNQSLKDL 164
F Q L ++
Sbjct: 181 VFERQCLLEV 190
>ref|NP_222745.1| ISOCITRATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 425
Score = 25.4 bits (54), Expect = 0.86
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 9 KHLGDVETSDFTTNAIEKSQQIAKFSRDMKNINESVGALQVLQIACKKLFN 59
+H+G VE +D +A+EK+ + K + D + + ++ + A + N
Sbjct: 374 RHMGWVEAADLIVSAMEKAIKSKKVTYDFARLMDGAKEVKCSEFASVMIEN 424
>ref|NP_223800.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 697
Score = 25.0 bits (53), Expect = 1.1
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 128 LEEKLNEIKELLGYL----SESLSNPKAFMPSFSNQSLKDLLSDNL 169
L LN++ +L+G E+L N K F F NQS L + L
Sbjct: 137 LVNNLNKLTQLIGETLIRNPENLPNSKVFNVKFGNQSTVIALPEGL 182
>ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
Length = 658
Score = 24.6 bits (52), Expect = 1.5
Identities = 14/61 (22%), Positives = 31/61 (49%), Gaps = 3/61 (4%)
Query: 82 IVENCQFLASPLFDTQLNIAINDEIFSMIVVNPLDLLE---NVGEFQAYLEEKLNEIKEL 138
I +NCQFL +L + ++ + + ++ P LL+ V + +++ +EIK +
Sbjct: 385 IHKNCQFLFVSATPNKLELELSQKNVAEQIIRPTGLLDPKFEVRDSDKQVQDLFDEIKSV 444
Query: 139 L 139
+
Sbjct: 445 V 445
>ref|NP_223695.1| PHENYLALANYL-TRNA SYNTHETASE ALPHA CHAIN [Helicobacter pylori
J99]
Length = 328
Score = 23.9 bits (50), Expect = 2.5
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 3 ILKTLQKHLGDVETSDFTTNAIEKSQQIAKFSRDMKNIN-ESVGALQVLQIACKKLFNKS 61
+++ L+K E + NA+ K A +KN+N E A K+ F K+
Sbjct: 4 LIERLEKVTNSKELEEARLNALGKKGVFADKFNQLKNLNGEEKNAFAKEIHHYKQAFEKA 63
Query: 62 MGLEDKDALQASIIKQELREIVENCQFLA 90
L+ K ++ + ++ +E ++ F A
Sbjct: 64 FELKKKAIMELELEERLKKEKIDVSLFNA 92
>ref|NP_223575.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 366
Score = 23.9 bits (50), Expect = 2.5
Identities = 13/55 (23%), Positives = 26/55 (46%), Gaps = 1/55 (1%)
Query: 111 VVNPLDLLENVGEFQAYLEEKLNEIKELLGYLSESLSNP-KAFMPSFSNQSLKDL 164
+ NPL+L+EN+ + + N + L +SN A PS ++++ +
Sbjct: 137 ITNPLELVENLKNLELQFSQSQNSMLSSLSSQIAQISNSLNALDPSSYSKNVSSM 191
>ref|NP_223203.1| cag island protein [Helicobacter pylori J99]
Length = 376
Score = 23.9 bits (50), Expect = 2.5
Identities = 17/58 (29%), Positives = 29/58 (49%), Gaps = 6/58 (10%)
Query: 28 QQIAKFSRDMKNINESVGALQVLQIACKKLFNKSMGLEDKDALQASII-KQELREIVE 84
+Q F ++K E V A + A KKL N + D L+ + KQ+++E+V+
Sbjct: 21 EQFGSFFNEIKKEQEEVAAKEDALKARKKLLNNT-----HDFLEDLVFRKQKIKELVD 73
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 23.9 bits (50), Expect = 2.5
Identities = 13/55 (23%), Positives = 26/55 (46%), Gaps = 1/55 (1%)
Query: 111 VVNPLDLLENVGEFQAYLEEKLNEIKELLGYLSESLSNP-KAFMPSFSNQSLKDL 164
+ NPL+L+EN+ + + N + L +SN A PS ++++ +
Sbjct: 142 ITNPLELVENLKNLELQFSQSQNSMLSSLSSQIAQISNSLNALDPSSYSKNVSSM 196
>ref|NP_223563.1| putative [Helicobacter pylori J99]
Length = 193
Score = 23.5 bits (49), Expect = 3.3
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 74 IIKQELREIVE----NCQFLASPLFDTQLNIAINDE 105
++ +L EI E N L+ PL D +LN ++N+E
Sbjct: 1 MVPTQLNEIAEFLKTNPYNLSQPLQDGRLNSSVNEE 36
>ref|NP_223425.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 358
Score = 23.5 bits (49), Expect = 3.3
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 81 EIVENCQFLASPLF-DTQLNIAINDEIFSMIVV 112
EI+EN + LA L+ D +LN I +E+F + +
Sbjct: 306 EIIEN-KTLARELYRDVKLNATIPEELFEAVAI 337
>ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99]
Length = 620
Score = 23.5 bits (49), Expect = 3.3
Identities = 13/43 (30%), Positives = 22/43 (50%), Gaps = 3/43 (6%)
Query: 58 FNKSMGLEDKDALQASIIKQELREIVENCQFLASPLFDTQLNI 100
F G+E K+ + A Q L+E EN + S +T++N+
Sbjct: 238 FKNETGIEIKNDVMAL---QRLKEAAENAKKELSSAMETEINL 277
>ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 623
Score = 23.1 bits (48), Expect = 4.3
Identities = 12/44 (27%), Positives = 22/44 (49%)
Query: 32 KFSRDMKNINESVGALQVLQIACKKLFNKSMGLEDKDALQASII 75
K +RD +N + + + IACK+L +G + AS++
Sbjct: 231 KLTRDQQNAIKEIQSDLTSPIACKRLIIGDVGCGKTMVILASMV 274
>ref|NP_223598.1| putative [Helicobacter pylori J99]
Length = 493
Score = 23.1 bits (48), Expect = 4.3
Identities = 11/38 (28%), Positives = 18/38 (46%)
Query: 121 VGEFQAYLEEKLNEIKELLGYLSESLSNPKAFMPSFSN 158
VG+ L + N +E L Y+ +S S P + S+
Sbjct: 136 VGQISKSLNDAHNSTRERLAYIIDSTSAPVCLLVPISS 173
>ref|NP_223664.1| putative [Helicobacter pylori J99]
Length = 466
Score = 22.7 bits (47), Expect = 5.6
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 53 ACKKLFNKSMGLEDKDALQASIIKQELREIVENCQFLASPL--FDTQLNIAINDEIFSMI 110
A K+FN + K Q ++ L EI +N F+ L + A ++
Sbjct: 344 AAAKVFN-----DYKHRFQQLSVETAL-EIAQNLSFMNKTLGLMVQMQSYAFKQQMGYFE 397
Query: 111 VVNPLDLLENVGEFQAYLEEKLNEIKEL 138
+ P D L++ E Q LE+K EI+++
Sbjct: 398 DIIPADALKDDKEHQENLEQKQQEIEKV 425
>ref|NP_223520.1| putative [Helicobacter pylori J99]
Length = 153
Score = 22.7 bits (47), Expect = 5.6
Identities = 18/82 (21%), Positives = 43/82 (51%), Gaps = 5/82 (6%)
Query: 3 ILKTLQKHLGD--VETSDFTTNA-IEKSQQIAKFSRDMKNINESVGALQVLQIA-CKKLF 58
+LK L++ + +E +F +N + +++ F + ++ + QV+ CK+LF
Sbjct: 39 VLKGLKQEICQKKLEKENFRSNKETQNTEEDVIFPKALEEVEVYAKDNQVIMAKPCKRLF 98
Query: 59 NKSMGLEDKDALQAS-IIKQEL 79
N+ + L+ + L+ + ++K L
Sbjct: 99 NEGLYLQYRSVLRENRLLKNHL 120
>ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pylori J99]
Length = 486
Score = 22.3 bits (46), Expect = 7.3
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 25 EKSQQIAKFSRDMKNINESVGALQVLQIACKKLFNKSMGLEDKD 68
E+ +QIA+ SR++K + + L+I L + LE++D
Sbjct: 326 ERHEQIAEISRELKTL------ARELEIPIIALVQLNRSLENRD 363
>ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 1035
Score = 22.3 bits (46), Expect = 7.3
Identities = 12/66 (18%), Positives = 30/66 (45%)
Query: 13 DVETSDFTTNAIEKSQQIAKFSRDMKNINESVGALQVLQIACKKLFNKSMGLEDKDALQA 72
D E + + I + + + + +KN N G +L+ +K+ ++ + L+
Sbjct: 183 DYEVTLQNDSLIRYNLSLEQVANAIKNSNNDTGGGVILENGFEKIIRSHGYIQSLNDLEE 242
Query: 73 SIIKQE 78
++K+E
Sbjct: 243 IVVKKE 248
>ref|NP_223489.1| putative spermidine synthase [Helicobacter pylori J99]
Length = 262
Score = 22.3 bits (46), Expect = 7.3
Identities = 30/143 (20%), Positives = 56/143 (38%), Gaps = 38/143 (26%)
Query: 36 DMKNINESVGALQVLQIACKKLFNKSMGLEDKDALQASIIKQELREIVENCQFLASPLFD 95
++KN A Q+L + KK ++ + L++ D + +K+ L+E
Sbjct: 119 EVKNNKNFTHAKQLLDLDIKK-YDLILCLQEPDIHKIDGLKRMLKE-------------- 163
Query: 96 TQLNIAINDEIFSMIVVNPL-------DLLENVGEFQAYLEEKLNEIKELLGYLSESLSN 148
D +F + +PL + L+N+G+F + ++ LSN
Sbjct: 164 --------DGVFISVAKHPLLEHVSMQNALKNLGDFFPITIPFVAPLR--------ILSN 207
Query: 149 PKAFMPSFSNQSLKDLLSDNLRA 171
SF LKDL++ + A
Sbjct: 208 KGYIYASFKTHPLKDLMTPKIEA 230
>ref|NP_223364.1| putative [Helicobacter pylori J99]
Length = 308
Score = 22.3 bits (46), Expect = 7.3
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 124 FQAYLEEKLNEIKELLGYLSESLSNPKAFMPSFSNQSLKDLLSDN 168
FQA E +E++EL +L + + +A + S SL+D L N
Sbjct: 204 FQAVRIEVNSELEELKEFLQCARNLKEAILCVISFHSLEDALVKN 248
>ref|NP_223673.1| putative [Helicobacter pylori J99]
Length = 161
Score = 21.9 bits (45), Expect = 9.5
Identities = 14/43 (32%), Positives = 25/43 (57%), Gaps = 1/43 (2%)
Query: 126 AYLEEKLNEIKELLGYLSESLSNPKAFMPSFSNQSLKDLLSDN 168
A L+++ ++I ELL YLS S S F+ + ++ + +DN
Sbjct: 30 ANLDDEYDKIDELLFYLSYS-SKVWNFLHTLDEKATTLIFNDN 71
>ref|NP_223071.1| copper-associated protein [Helicobacter pylori J99]
Length = 66
Score = 21.9 bits (45), Expect = 9.5
Identities = 7/27 (25%), Positives = 16/27 (58%)
Query: 7 LQKHLGDVETSDFTTNAIEKSQQIAKF 33
++K +G++E F ++EK + +F
Sbjct: 19 IEKFVGEIEGVSFIDASVEKKSVVVEF 45
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.133 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,558
Number of Sequences: 1491
Number of extensions: 7940
Number of successful extensions: 52
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 30
length of query: 171
length of database: 494,079
effective HSP length: 72
effective length of query: 99
effective length of database: 386,727
effective search space: 38285973
effective search space used: 38285973
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)