BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645692|ref|NP_207869.1| hypothetical protein
[Helicobacter pylori 26695]
(228 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223066.1| putative [Helicobacter pylori J99] 177 2e-46
ref|NP_224180.1| putative [Helicobacter pylori J99] 51 2e-08
ref|NP_223331.1| putative [Helicobacter pylori J99] 31 0.024
ref|NP_224021.1| putative [Helicobacter pylori J99] 29 0.091
ref|NP_222895.1| putative [Helicobacter pylori J99] 28 0.26
ref|NP_223600.1| putative [Helicobacter pylori J99] 27 0.59
ref|NP_223315.1| PHOSPHOSERINE PHOSPHATASE [Helicobacter py... 26 0.77
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 26 1.0
ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter p... 26 1.0
ref|NP_222912.1| putative [Helicobacter pylori J99] 26 1.0
ref|NP_223024.1| GUANYLATE KINASE [Helicobacter pylori J99] 25 1.3
ref|NP_223992.1| QUINOLINATE SYNTHETASE [Helicobacter pylor... 25 1.7
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 25 1.7
ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicob... 25 1.7
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 25 1.7
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 25 2.2
ref|NP_223773.1| putative [Helicobacter pylori J99] 24 2.9
ref|NP_223659.1| putative [Helicobacter pylori J99] 24 2.9
ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 24 2.9
ref|NP_223137.1| putative [Helicobacter pylori J99] 24 2.9
ref|NP_222839.1| putative [Helicobacter pylori J99] 24 2.9
ref|NP_222774.1| putative [Helicobacter pylori J99] 24 2.9
ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Heli... 24 3.8
ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 24 3.8
ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 24 3.8
ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTR... 23 5.0
ref|NP_224099.1| putative [Helicobacter pylori J99] 23 5.0
ref|NP_222977.1| putative [Helicobacter pylori J99] 23 5.0
ref|NP_224022.1| putative [Helicobacter pylori J99] 23 6.5
ref|NP_223800.1| putative Outer membrane protein [Helicobac... 23 6.5
ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori... 23 6.5
ref|NP_223045.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobact... 23 6.5
ref|NP_222999.1| P-AMINOBENZOATE SYNTHETASE [Helicobacter p... 23 6.5
ref|NP_223617.1| putative [Helicobacter pylori J99] 23 8.5
ref|NP_223415.1| putative [Helicobacter pylori J99] 23 8.5
>ref|NP_223066.1| putative [Helicobacter pylori J99]
Length = 167
Score = 177 bits (450), Expect = 2e-46
Identities = 98/179 (54%), Positives = 119/179 (65%), Gaps = 24/179 (13%)
Query: 60 IIFDAD---------KDYESNKKEILKIVSESKQTISEEQIFLFPNNQDDGDLETLLLKI 110
IIFDAD +++ K I + E +EQIFLFPNNQDDGDLETLLL+I
Sbjct: 3 IIFDADIKKENQESDAGFDNKLKHIREKFKEKGTDFPKEQIFLFPNNQDDGDLETLLLEI 62
Query: 111 ANHKEFINCFESYLDCIKKKEHYKPIKNIRKSKWYAYLEALGLEKFFQYTWDTKKKNNKK 170
A H EF+ CFE YL+CIK KEHYKPIKNIRK+ YAYLEALGLE K
Sbjct: 63 AKHDEFLKCFEGYLECIKSKEHYKPIKNIRKNMLYAYLEALGLENL-----------TKT 111
Query: 171 KLIIDDKDGDEIEIKDQYKGDYEEL-KKVLDLNSKSLIPLKNFLGQFAENNQKTNPKIF 228
+ + D G +IK +Y+ +Y++L ++V+D +S SLIPLKNFLGQFAEN QKTNPKIF
Sbjct: 112 NIDVFDSKG---KIKSRYEENYKKLTEEVIDFSSNSLIPLKNFLGQFAENKQKTNPKIF 167
>ref|NP_224180.1| putative [Helicobacter pylori J99]
Length = 176
Score = 51.2 bits (121), Expect = 2e-08
Identities = 46/161 (28%), Positives = 79/161 (48%), Gaps = 23/161 (14%)
Query: 4 KEILIFVEGPSDKVFLEVYLYFLERFPIKNFKVQNVDGKDNLSKRLLEIE---KYDKTLI 60
+E ++VEG SDK+FL + L ++ +K+ + N KD LS+ I+ K I
Sbjct: 2 REKFVYVEGESDKIFLTI-LNEVKNLGLKDSNIINCGSKDKLSEEAESIKGNLKAKDIYI 60
Query: 61 IFDADKDYESNK-KEILKIVSE--------SKQTISEEQIFLFPNNQDDG------DLET 105
+FD+D + K +EI K + E + + ++ +IFL P N + +LE
Sbjct: 61 VFDSDNQTKETKIQEIKKQLQENTKQEHRLNDEEFNQIKIFLLPENDETKHHPNYCELEP 120
Query: 106 LLLKIA---NHKEFINCF-ESYLDCIKKKEHYKPIKNIRKS 142
LL K+A +K F F + Y + + KPI++ +K+
Sbjct: 121 LLEKMAKESENKAFYTSFRQHYNTLFNEVKQIKPIQSEQKN 161
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 31.2 bits (69), Expect = 0.024
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 12/84 (14%)
Query: 71 NKKEILKIVSESKQTISEEQIFLFPNNQDDGDLE------------TLLLKIANHKEFIN 118
N + + KIV K ++ I L NQ+D DL+ + I K +
Sbjct: 7 NNEFVCKIVGTHKGLAKQDVIALDDENQEDNDLKNKADTFVSQRAISFCKSIQTSKNIKD 66
Query: 119 CFESYLDCIKKKEHYKPIKNIRKS 142
FE+ ++C ++ K KN++ S
Sbjct: 67 SFETIMECYDEELKKKSFKNLKIS 90
>ref|NP_224021.1| putative [Helicobacter pylori J99]
Length = 410
Score = 29.3 bits (64), Expect = 0.091
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 107 LLKIANHKEFINCFESYLDCIKKKEHYKPIKNIRKSKWYAYLEALGLEKFFQYTWDTKKK 166
L +++ +EF C+ SYL + K H+ PI + R L +++F +Y D KKK
Sbjct: 259 LSRLSGAREFKGCYNSYLHYLVLK-HFNPISDPR-------LSVFNVKEFKRYN-DIKKK 309
Query: 167 NNKK 170
K+
Sbjct: 310 MVKE 313
>ref|NP_222895.1| putative [Helicobacter pylori J99]
Length = 567
Score = 27.7 bits (60), Expect = 0.26
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 6 ILIFVEGPSDKVFLEVYLYFLERFPIKNFKVQNVDGKDNLSKRLLEI-EKYDKTLIIFDA 64
+L+ + DK YLY K++ + K LLE+ EK + + DA
Sbjct: 85 VLVSKQYEEDKRETRKYLY-----QKGELKLEVASQNQSFFKTLLEVAEKGNISHCEKDA 139
Query: 65 DKDYESNKKEILKIVSESKQTISEEQI 91
D + + N E+LK + + +SEE++
Sbjct: 140 DTEGKQNLFEVLKAILDKISKLSEEEV 166
>ref|NP_223600.1| putative [Helicobacter pylori J99]
Length = 337
Score = 26.6 bits (57), Expect = 0.59
Identities = 22/87 (25%), Positives = 41/87 (46%), Gaps = 6/87 (6%)
Query: 69 ESNKKEILKIVSESKQTISEEQIFLFPNNQDDGDLETLLLKIAN-HKEFINCFESYLDCI 127
+ +KKE+LK V+ ++ + +E + F + L T LKI+ K+ + YL
Sbjct: 200 KGSKKEVLKAVNAMQEDLDKECVKAFLKAFFEKSLNTDTLKISELCKKVGYDKDDYLKLA 259
Query: 128 KKKEHYKPIKNIRKSKWYAYLEALGLE 154
+K + K + +W+ + E L E
Sbjct: 260 QKAQ-----KFLVPDQWFQFFEILSQE 281
>ref|NP_223315.1| PHOSPHOSERINE PHOSPHATASE [Helicobacter pylori J99]
Length = 207
Score = 26.2 bits (56), Expect = 0.77
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 47 KRLLEIEKYDKTLIIFDADKDYESNKKEILKIVSESKQTISE 88
+RLL I K D+TL++ D D K +KI +K+ + +
Sbjct: 149 QRLLNISK-DRTLVVGDGANDLSMFKHAHIKIAFNAKEILKQ 189
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 25.8 bits (55), Expect = 1.0
Identities = 44/197 (22%), Positives = 79/197 (39%), Gaps = 22/197 (11%)
Query: 11 EGPSDKVFLEVYLYFLERFPIKNFKVQNVDGKDNLSKRLLEIEKYD-KTLIIFDADKDYE 69
E P K F ++ LYFLE K +N K + E +D K L+ DK +
Sbjct: 100 ENPLSKAFCQMVLYFLEEIE----KEKNNSLKHTIICNAHEFFLFDCKDLLSLKEDKRIK 155
Query: 70 SNKKEILKIV-SESKQTISEEQIFLFPNNQDDGDLETLLLKIANHKEFINCFESYL--DC 126
K K ++S + + + F G+L +++ + + L +
Sbjct: 156 KFYKNYAKKEGTDSSKPKFYKDLEQFLQEDFQGELRYTHFNLSDDFKELPLIYQVLSQEV 215
Query: 127 IKKKEHYKPIKNIRKSKWYAYLEALGLEKFFQYTWDTKKKNNKKKLIID---DKDGDEIE 183
+ K++ + K + L LGLE ++N+K K++I K+
Sbjct: 216 LLKQKRTLDANTLNKDFYEELLYILGLE----------EQNDKGKILIKPSRTKNSLSGA 265
Query: 184 IKDQYKG-DYEELKKVL 199
+K++YK D EE+ +L
Sbjct: 266 LKEKYKNLDDEEVMALL 282
>ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter pylori J99]
Length = 459
Score = 25.8 bits (55), Expect = 1.0
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 34 FKVQNVDGKDNLSKRLLEIEKYDKTLIIFDADKDYESNKKE 74
F ++ D K +L + L +++ DKT I +ADKD +S +++
Sbjct: 383 FSLKEADLKHHLEQELKKLD--DKTPISKEADKDKKSEEEK 421
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 25.8 bits (55), Expect = 1.0
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 54 KYDKTL-IIFDADKDYESNKKEILKIVSESKQTISEEQIF 92
K+DK L I FD+ + + +KK + +I ES + I + + F
Sbjct: 465 KFDKDLEIYFDSHESFNISKKYLQEIDQESLKKIKQSKDF 504
Score = 25.0 bits (53), Expect = 1.7
Identities = 20/82 (24%), Positives = 37/82 (44%), Gaps = 15/82 (18%)
Query: 4 KEILIFVEGPSDKVFLEVYLYFLER------------FPIKNFKVQNVDGKDNLSKRLLE 51
K +IFVEG +D +L + +L PI K + D K+ + K L E
Sbjct: 746 KHRIIFVEGITDYCYLSAFKLYLRYKEYKDNPIPFTFLPISGLKNDSNDMKETIEK-LCE 804
Query: 52 IEKYDKTLIIFDADKDYESNKK 73
++ + +++ D D+ N++
Sbjct: 805 LDNH--PIVLTDDDRKCVFNQQ 824
Score = 23.9 bits (50), Expect = 3.8
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 52 IEKYDKTLIIFDADKDYESNKKEILKIVSESKQTISEEQIFLFPNNQDDGDLETLLLKIA 111
+++ KTLI + +K E+ ++ VS + NN D ++ T +
Sbjct: 14 LKELSKTLISYPFEKHVEALGEQCSNFVS------------IPINNDDYSNICTFVSDFI 61
Query: 112 NHKEFINCFESYLDCIKKK 130
N N ES+LD K K
Sbjct: 62 NLIASYNLLESFLDFYKDK 80
>ref|NP_223024.1| GUANYLATE KINASE [Helicobacter pylori J99]
Length = 206
Score = 25.4 bits (54), Expect = 1.3
Identities = 15/46 (32%), Positives = 25/46 (53%), Gaps = 3/46 (6%)
Query: 36 VQNVDGKDNLSKRLLEIEKYDKTLIIFD---ADKDYESNKKEILKI 78
++ D K+ + KRL+ K + L FD ++D E +K+ IL I
Sbjct: 136 LRGTDSKETIEKRLINAYKEMQCLESFDYLIINEDLEKSKEIILSI 181
>ref|NP_223992.1| QUINOLINATE SYNTHETASE [Helicobacter pylori J99]
Length = 336
Score = 25.0 bits (53), Expect = 1.7
Identities = 19/54 (35%), Positives = 26/54 (47%), Gaps = 6/54 (11%)
Query: 180 DEIEIKDQYKGDYEELKKVLDLNSKSLIPL--KNFLGQ----FAENNQKTNPKI 227
DEI Y GD EL K+ + K+LI +F+G+ A N Q PK+
Sbjct: 30 DEIVELAHYTGDSLELAKIASQSDKNLIVFCGVHFMGESVKALAFNKQVIMPKL 83
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 25.0 bits (53), Expect = 1.7
Identities = 10/19 (52%), Positives = 13/19 (67%)
Query: 149 EALGLEKFFQYTWDTKKKN 167
E LG EKF Q W+ K+K+
Sbjct: 109 EDLGREKFIQKVWEWKEKS 127
>ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 701
Score = 25.0 bits (53), Expect = 1.7
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 52 IEKYDKTLIIFDADKDYESNKKEILKIVSES 82
+E+Y K++++ D D + + N+K L V +S
Sbjct: 659 LEEYFKSVLVMDKDIEIQKNRKNFLWGVYQS 689
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 25.0 bits (53), Expect = 1.7
Identities = 38/180 (21%), Positives = 74/180 (41%), Gaps = 21/180 (11%)
Query: 51 EIEKYDKTLIIFDADKDYESNKKEILKIVS-ESKQTISEEQIFLFPNNQDDG-------D 102
E++K K + + E K+E K+++ E+++ + + + N + + D
Sbjct: 1052 EVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKD 1111
Query: 103 LETLLLKIANHKEFINCFESYLDCIKKKEHYKPIKNIRKSKWYAYLEALGLEKFFQYTWD 162
L L K KE + ++YLDC+ + + K K K L + +
Sbjct: 1112 LPKDLQKKVLAKESV---KAYLDCVSRARNEKEKKECEKL----------LTPEARKLLE 1158
Query: 163 TKKKNNKKKLIIDDKDGDEIEIKDQYKGDYEELKKVLDLNSKSLIPLKNFLGQFAENNQK 222
KK+ K L K +E E K+ K E +K+L+ +S+ K+ + + +K
Sbjct: 1159 ESKKSVKAYLDCVSKAKNEAEKKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEK 1218
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 24.6 bits (52), Expect = 2.2
Identities = 34/169 (20%), Positives = 70/169 (41%), Gaps = 41/169 (24%)
Query: 39 VDGKDNLSKRLLEIEKYDKTLIIFDADKDYESNKKEILKIVSESKQTISEEQIFLFPNNQ 98
++ K+ + ++ +K ++ + +A KD + N K + + E+K+ EE+ + +N
Sbjct: 156 IEDKNYYTNAFIKPQKENQENMSENAPKDAQKNNKPLKEEKEETKE--KEEETIIIGDN- 212
Query: 99 DDGDLETLLLKIANHKEFINCFESYLDCIKK--KEHYKPIKNIRKSKWYAY--------- 147
T +KI IKK ++ YK +K+ ++ KWY
Sbjct: 213 ------TNAMKI----------------IKKDIQKGYKALKSSQR-KWYCLWACSKKSKL 249
Query: 148 ----LEALGLEKFFQYTWDTKKKNNKKKLIIDDKDGDEIEIKDQYKGDY 192
E ++F + +D + +K +I DG + + + GDY
Sbjct: 250 SLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDY 298
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 24.3 bits (51), Expect = 2.9
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 165 KKNNKKKLIIDDKDGDEIEIKDQYKGDYEELKKVLDLNSKSLIPLKNFLGQFAENNQKTN 224
+K N+K + +K GD +E K++ K + EE SL + + L F E K
Sbjct: 59 EKKNEKIEKVTEKQGDFLEPKEEPKEEPEE----------SLEDIFSSLNDFQEKTDKNA 108
Query: 225 PK 226
K
Sbjct: 109 QK 110
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 24.3 bits (51), Expect = 2.9
Identities = 11/43 (25%), Positives = 23/43 (52%)
Query: 139 IRKSKWYAYLEALGLEKFFQYTWDTKKKNNKKKLIIDDKDGDE 181
I +++ + + L LEK ++ DTK + + + I + + DE
Sbjct: 570 IGANRFLTHYDNLNLEKVLEHAKDTKLEQKEIQAITKEPNNDE 612
>ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 439
Score = 24.3 bits (51), Expect = 2.9
Identities = 14/54 (25%), Positives = 24/54 (43%)
Query: 62 FDADKDYESNKKEILKIVSESKQTISEEQIFLFPNNQDDGDLETLLLKIANHKE 115
F A KD+ES KKE +++ + + L N +L + I +H +
Sbjct: 379 FQAYKDFESFKKEAMRLSQLKGKDFFKPLRILLTGNSHGVELPLIFPYIQSHHQ 432
>ref|NP_223137.1| putative [Helicobacter pylori J99]
Length = 115
Score = 24.3 bits (51), Expect = 2.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 165 KKNNKKKLIIDDKDGDEIEIKDQYKGDYEELKK 197
KKN+++K+I+ DK +E Q K + E +K
Sbjct: 72 KKNHERKMILQDKQKEEQMRLYQAKKERESRQK 104
>ref|NP_222839.1| putative [Helicobacter pylori J99]
Length = 143
Score = 24.3 bits (51), Expect = 2.9
Identities = 8/27 (29%), Positives = 19/27 (69%)
Query: 64 ADKDYESNKKEILKIVSESKQTISEEQ 90
+ +D KKEIL++++ K+T++ ++
Sbjct: 82 SQEDRNKRKKEILEVIANKKKTMTMKE 108
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 24.3 bits (51), Expect = 2.9
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 17/129 (13%)
Query: 72 KKEILKIVSESKQTISEEQIFLFPNNQDDGDLETLLLKIANHKEFINCFESYLDCIKKKE 131
+KE ++ + KQ S ++ NNQ LE +++A KE I I+K E
Sbjct: 208 EKENQRLTDKLKQLESAQKSLENTNNQLRQALENSNVQLAQAKEKI--------AIEKSE 259
Query: 132 HYKPIKNIRKSKWYAYLEALGL--EKFFQYTWDTKKKNNKKKLIIDDKDGDEIEIKDQYK 189
+ I ++ + L L + D K++N K + + I +K++
Sbjct: 260 LEREIARLKSLEGMEAKSDLDLHNRRLASANEDLKRQNRK-------LEEENIALKERVD 312
Query: 190 GDYEELKKV 198
G E+L K+
Sbjct: 313 GLNEQLSKL 321
>ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
Length = 1001
Score = 23.9 bits (50), Expect = 3.8
Identities = 14/46 (30%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
Query: 160 TWDTKKKNNKKKLIIDDKDGDEIEIKDQY-KGDYEELKKVLDLNSK 204
+++ KKK K KL +++ + E + D Y G + +L + L SK
Sbjct: 344 SFERKKKRQKSKLALNELNAGEWVVHDDYGVGVFSQLIQHSVLGSK 389
>ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 363
Score = 23.9 bits (50), Expect = 3.8
Identities = 11/54 (20%), Positives = 26/54 (47%)
Query: 171 KLIIDDKDGDEIEIKDQYKGDYEELKKVLDLNSKSLIPLKNFLGQFAENNQKTN 224
K+I ++E++++ K +E+ + N ++ LK+F G + + N
Sbjct: 54 KIITQTAQLTQVEMQEENKKTMQEVASAMKSNKETNESLKDFQGALKDTMENLN 107
>ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 865
Score = 23.9 bits (50), Expect = 3.8
Identities = 38/162 (23%), Positives = 62/162 (37%), Gaps = 27/162 (16%)
Query: 52 IEKYDKTLIIFDADKDYESNKKEILKIVSESKQTISEEQIFLFPNNQDDGDLE-TLLLKI 110
IE T + +A K E+ E K + E +E++ ++ + D+ + KI
Sbjct: 578 IESKLVTRAVENAQKKVENLHFESRKHLLEYDDVANEQRKSVYKFRDELLDINYDISAKI 637
Query: 111 ANHKEF-INCFESYLDCIK----KKEHYKPIKNIRKSKWYAYLEALGLEKFFQYTWDTKK 165
A ++E+ +N S L +E +KNI K + A +E LEK
Sbjct: 638 AENREYALNQIFSKLKAFDHQNLSEEELLGLKNILKEDFNASVELEDLEKASPI------ 691
Query: 166 KNNKKKLIIDDKDGDEIEIKDQYKGDYEELKKVLDLNSKSLI 207
E + ++ K DYE K LD +S I
Sbjct: 692 ---------------EKFVAEKLKSDYENKMKALDSEQRSRI 718
>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 641
Score = 23.5 bits (49), Expect = 5.0
Identities = 34/131 (25%), Positives = 54/131 (40%), Gaps = 24/131 (18%)
Query: 99 DDGDLETLLLKIANHKEFINCFESY-LDCIKKK--------EHYKPIKNIRKSKWYAYL- 148
D G L+ LL + KE E Y LD + KK +++K +K + +S L
Sbjct: 39 DTGKLKALLGDFSEIKE-----EGYGLDFVGKKIALNQAFKKNHKILKPLNESTSKHILI 93
Query: 149 --EALGLEKFFQYTWDTKKKNNKKKLIID---DKDGDEIEIKDQYKGDYEELKKVLDLNS 203
+ L K + ++ K K + ID + D D + EE+ K LD +
Sbjct: 94 KGDNLDALKILKQSYSEKIK----MIYIDPPYNTKNDNFIYGDDFSQSNEEVLKTLDYSK 149
Query: 204 KSLIPLKNFLG 214
+ L +KN G
Sbjct: 150 EKLDYIKNLFG 160
>ref|NP_224099.1| putative [Helicobacter pylori J99]
Length = 329
Score = 23.5 bits (49), Expect = 5.0
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 166 KNNKKKLIIDDKDGDEIEIKDQYKGDYEELKKVLDLNSKSLIPLKNFLGQFAENNQKT 223
K++ K+ + +K +E ++ +++G LK+ K L + +F A NN T
Sbjct: 241 KDSWLKISVPEKYLNEFKVGKEFEGYIPALKRSAKFRVKYLSVMGDFATWKATNNSNT 298
>ref|NP_222977.1| putative [Helicobacter pylori J99]
Length = 327
Score = 23.5 bits (49), Expect = 5.0
Identities = 27/122 (22%), Positives = 55/122 (44%), Gaps = 18/122 (14%)
Query: 97 NQDDGDLETLLLKIANHKEFINCFESYLDCIKKKEHYKPIKNIRKSKWYAYLEALGLEKF 156
N D L +L++ NH+ F+++ ++ K PI+ ++ ++ Y+
Sbjct: 22 NVDHNLLSAQVLRVKNHRIKEKFFKTFETKVETKNGEVPIQALKIARTYSQ--------- 72
Query: 157 FQYTWDTKKKNNKKKLIIDDKDGDEIEIKDQYKGDYEELKKVLDLNSKSLIPL--KNFLG 214
+Y + +K K ++ +K E +IK Q DY+ ++N K + + K+FL
Sbjct: 73 -KYPYTYFSAMSKAKEVLCEKQAFE-QIK-QENQDYQ----ACEVNQKYCVYVESKDFLK 125
Query: 215 QF 216
F
Sbjct: 126 DF 127
>ref|NP_224022.1| putative [Helicobacter pylori J99]
Length = 309
Score = 23.1 bits (48), Expect = 6.5
Identities = 15/47 (31%), Positives = 25/47 (52%), Gaps = 6/47 (12%)
Query: 182 IEIKDQYKGDYEELKKVLDLNSKSLIPLKNFLGQFAENNQKTNPKIF 228
I IKD +KG+ +++ L K +F+ +F +NN K + K F
Sbjct: 160 ILIKDFFKGNNYLYRRLCFLLGK------HFMDRFLKNNAKASVKDF 200
>ref|NP_223800.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 697
Score = 23.1 bits (48), Expect = 6.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 199 LDLNSKSLIPLKNFLGQFAENNQKT 223
LDLN+K L L N+ GQ N +T
Sbjct: 415 LDLNNKGLNFLPNYGGQLNGANNQT 439
>ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori J99]
Length = 519
Score = 23.1 bits (48), Expect = 6.5
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 43 DNLSKRLLEIEKYDKTLII-----FDADKDYESNKKEILKIVSESKQTISEEQIFLFPN 96
D +++ L ++K D L I FDA D KK++ + Q + +F+FP+
Sbjct: 409 DKINEALTIVQKLDPQLEIDGPLQFDASIDKGVAKKKM-----PNSQVAGQASVFIFPD 462
>ref|NP_223045.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
Length = 343
Score = 23.1 bits (48), Expect = 6.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 193 EELKKVLDLNSKSLIPLKNF 212
EE +KV+D +KSL KNF
Sbjct: 100 EEARKVMDKLTKSLQTQKNF 119
>ref|NP_222999.1| P-AMINOBENZOATE SYNTHETASE [Helicobacter pylori J99]
Length = 567
Score = 23.1 bits (48), Expect = 6.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 190 GDYEELKKVLDLNSKSLIPLKNFLGQFAENNQK 222
GD++ K V L + +L LKN L ++N K
Sbjct: 4 GDFKYQKSVKKLTATNLNELKNALDFISQNRGK 36
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 22.7 bits (47), Expect = 8.5
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 176 DKDGDEIEIKDQYKGDYEELKKVLDLNSKSLIP 208
+KD + DQY E++KK LN+K+L P
Sbjct: 183 EKDTKLVSSHDQY----EKIKKSGSLNTKNLDP 211
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 22.7 bits (47), Expect = 8.5
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 164 KKKNNKKKLIIDDKDGDEIEIKDQYKGDYEELKKVLDLNSKSLIPLKNFLGQFAENNQK 222
+ KN + + D K+ ++ Q+K + K+ L+ K L + L Q EN +K
Sbjct: 76 ENKNLQLQTHFDKKEAHLKHLEAQHKEFVRDEKRYLEKEKKELEKERQILEQERENFKK 134
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.139 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 294,447
Number of Sequences: 1491
Number of extensions: 16312
Number of successful extensions: 88
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 41
length of query: 228
length of database: 494,079
effective HSP length: 75
effective length of query: 153
effective length of database: 382,254
effective search space: 58484862
effective search space used: 58484862
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)