BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645694|ref|NP_207871.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(189 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223064.1| putative [Helicobacter pylori J99] 341 6e-96
ref|NP_222984.1| GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE P... 30 0.031
ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobact... 28 0.12
ref|NP_223328.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III ... 25 1.0
ref|NP_224119.1| putative ferredoxin-like protein [Helicoba... 25 1.3
ref|NP_223874.1| putative [Helicobacter pylori J99] 25 1.3
ref|NP_223235.1| AMINOPEPTIDASE [Helicobacter pylori J99] 24 2.2
ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [H... 24 2.9
ref|NP_223320.1| putative PROCESSING PROTEASE [Helicobacter... 24 2.9
ref|NP_223149.1| putative [Helicobacter pylori J99] 24 2.9
ref|NP_224061.1| putative Inner membrane protein [Helicobac... 23 5.0
ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME ... 23 5.0
ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Heli... 23 5.0
ref|NP_223970.1| co-chaperone with DnaK [Helicobacter pylor... 23 6.5
ref|NP_223538.1| putative lipopolysaccharide biosynthesis p... 23 6.5
ref|NP_223272.1| putative efflux transporter [Helicobacter ... 23 6.5
ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicob... 22 8.5
ref|NP_223225.1| putative [Helicobacter pylori J99] 22 8.5
ref|NP_223035.1| putative [Helicobacter pylori J99] 22 8.5
ref|NP_222973.1| putative [Helicobacter pylori J99] 22 8.5
>ref|NP_223064.1| putative [Helicobacter pylori J99]
Length = 189
Score = 341 bits (875), Expect = 6e-96
Identities = 170/188 (90%), Positives = 180/188 (95%)
Query: 1 MKKIAFFIFVILFSVGIYLIWHVLLEKALELKLATSANDLLLKLLAILGVFSMLVLFQGI 60
MKKI FFIFV+LFSVGIYL WHVLLEK+LELKL TSANDLLLKL A+LGVFS+LVLFQG+
Sbjct: 1 MKKILFFIFVVLFSVGIYLTWHVLLEKSLELKLVTSANDLLLKLFALLGVFSILVLFQGV 60
Query: 61 ISSYKKRQLKRILQKIDAMNGFEFEEYSKIFFTSKGFEVSITQKSGDYGADLIIEKDGIK 120
ISSYK+RQLKRILQKIDAMNGFEFEEYSKIFFTSKGFEV+ITQKSGDYGADLI EKDG+K
Sbjct: 61 ISSYKERQLKRILQKIDAMNGFEFEEYSKIFFTSKGFEVTITQKSGDYGADLIAEKDGVK 120
Query: 121 WAVQVKRYSHKVSPKAIQEVVSSKAYYACEKACVITNSYFTQAAQKLAQANEVLLIDRDE 180
WAVQ KRYSHKVSPKAIQEVVSSKAYYACEKACVITNSYFTQAAQKLAQANEV+LIDRDE
Sbjct: 121 WAVQAKRYSHKVSPKAIQEVVSSKAYYACEKACVITNSYFTQAAQKLAQANEVILIDRDE 180
Query: 181 WVRFLNEK 188
WV+FL K
Sbjct: 181 WVKFLGGK 188
>ref|NP_222984.1| GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE PYROPHOSPHATASE
[Helicobacter pylori J99]
Length = 484
Score = 30.4 bits (67), Expect = 0.031
Identities = 25/91 (27%), Positives = 41/91 (44%), Gaps = 12/91 (13%)
Query: 10 VILFSVGIYLIWHVLLEKALELKLATS-----ANDLLLKLLAILGVFSMLVLFQGIISSY 64
+I VG I + L+K L++KLA + + L K GV G I +
Sbjct: 155 LISLDVGTIRIKEMFLDKDLDVKLAKAFIQKEVSKLPFKHKNAFGV-------GGTIRAL 207
Query: 65 KKRQLKRILQKIDAMNGFEFEEYSKIFFTSK 95
K +KR ID+++G+E + + + F K
Sbjct: 208 SKVLMKRFDYPIDSLHGYEIDAHKNLAFIEK 238
>ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobacter pylori J99]
Length = 414
Score = 28.5 bits (62), Expect = 0.12
Identities = 31/122 (25%), Positives = 43/122 (34%), Gaps = 31/122 (25%)
Query: 62 SSYKKRQLKRILQKIDAMN---------GFEFEEYSKIFFTSKGFEVSITQKSGDYGADL 112
S Y K +LK IDA+N G EY FF K
Sbjct: 253 SDYLKEKLKEAKDLIDALNLRKATIYKIGLMLLEYQYDFFKGK----------------- 295
Query: 113 IIEKDGIKWAVQVKRYSHKVSPKAIQEVVSSKAYYACEKACVITNSYFTQAAQKLAQANE 172
E +K ++H VS I +S+K Y ACE+ +F+ A +N
Sbjct: 296 --ELRPLKLLDLANEFNHSVS--TISRAISNK-YLACERGVFPIKHFFSIALDNSETSNA 350
Query: 173 VL 174
V+
Sbjct: 351 VI 352
>ref|NP_223328.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE [Helicobacter
pylori J99]
Length = 457
Score = 25.4 bits (54), Expect = 1.0
Identities = 24/87 (27%), Positives = 42/87 (47%), Gaps = 15/87 (17%)
Query: 26 EKALELK-------LATSANDLLLKLLAILGVFSMLVLFQGIISSYK---KRQLKRILQK 75
EKAL+L +A S D+L K + + + ++ + + I + K K+ L+K
Sbjct: 349 EKALDLGHLPVERGVALSQEDVLRKEVIMQMMSNLKLDYSKIEEKFSIDFKAHFKKELEK 408
Query: 76 IDAMNGFEFEEYSKIFFTSKGFEVSIT 102
+ +EE + F SKGFE++ T
Sbjct: 409 LKP-----YEEAGLLSFNSKGFEMTRT 430
>ref|NP_224119.1| putative ferredoxin-like protein [Helicobacter pylori J99]
Length = 458
Score = 25.0 bits (53), Expect = 1.3
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 16/103 (15%)
Query: 42 LKLLAILGVFSMLVLFQGIISSYKKRQLKRILQKID----AMNGFEFEEYSKIFFTSKGF 97
LK +A +GV +++V I S K+R L I + D +G+ +Y +F +
Sbjct: 315 LKTIAYMGVIAVVVALLIITSFKKERMLLDINRNSDLYEIRSSGYVDNDYVFLFHNT--- 371
Query: 98 EVSITQKSGDYGADLIIEKDGIKWAVQVKRYSHKVSPKAIQEV 140
K ++ ++ +KD +Q+K+ + ++ KA Q++
Sbjct: 372 ----DNKDHEFYFKILGQKD-----IQIKKPLNPIAIKAGQKI 405
>ref|NP_223874.1| putative [Helicobacter pylori J99]
Length = 415
Score = 25.0 bits (53), Expect = 1.3
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 3 KIAFFIFVILFSVGIYLIWHVLLEKALELKLATSANDLL--LKLLAILGVFSMLVLFQGI 60
++ F I ++ YLI +L+K + LL + L AIL S+LVL G+
Sbjct: 87 RLPFLIAHVINMFLFYLIGRKILKKPKDALYVVLTYALLPGVNLFAILLAKSVLVLSLGL 146
Query: 61 ISSY 64
+ SY
Sbjct: 147 LISY 150
>ref|NP_223235.1| AMINOPEPTIDASE [Helicobacter pylori J99]
Length = 496
Score = 24.3 bits (51), Expect = 2.2
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 156 TNSYFTQAAQKLAQANEVLLIDRDEWVRFLNEKR 189
T Y + AQK+A+ N + + DE +FL EK+
Sbjct: 189 TPVYMAEVAQKVAKENHLEIHVHDE--KFLEEKK 220
>ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 764
Score = 23.9 bits (50), Expect = 2.9
Identities = 30/147 (20%), Positives = 62/147 (41%), Gaps = 22/147 (14%)
Query: 24 LLEKALELK--LATSANDLLLKLLA----------ILGVFSMLVLFQGIISSYKKRQLKR 71
+LE LEL+ + T N L L+ LG S+ + +G + + K+ ++++
Sbjct: 509 VLEDPLELQNPITTELNTLRTSLVCGLLDASLRNKNLGFKSIALYEKGSVYNSKREEIQK 568
Query: 72 ILQKIDAMNGFEFEEYSK-IFFTSKGFEVSITQKSGDYGADLIIEKDGIKWAVQVKRYSH 130
+ + + E ++K + F +++ GD+ + + + I Q +
Sbjct: 569 LGFLVSGLQKKESYPHAKGKAWDFYSFAECVSRIIGDFSLEKLTTQTPINHPYQSAKIIQ 628
Query: 131 ---------KVSPKAIQEVVSSKAYYA 148
K+ PK IQE+ ++YYA
Sbjct: 629 NNEIIGVIAKIHPKVIQELDLFESYYA 655
>ref|NP_223320.1| putative PROCESSING PROTEASE [Helicobacter pylori J99]
Length = 435
Score = 23.9 bits (50), Expect = 2.9
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 23 VLLEKALELKLATSANDLLLKL--------LAILGVFSMLV---LFQGIISSYKKRQLKR 71
+L +KA+ L + TSA DL + L AI+ + +L Q + K R L +
Sbjct: 90 LLEQKAISLNVDTSAEDLQITLEFLKEYEDEAIMRLKELLKSPNFTQNALEKVKTRMLAQ 149
Query: 72 ILQK 75
+LQK
Sbjct: 150 LLQK 153
>ref|NP_223149.1| putative [Helicobacter pylori J99]
Length = 282
Score = 23.9 bits (50), Expect = 2.9
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 49 GVFSMLVLFQGIISSYKKRQLKRILQKIDAMNGFEFEEYSKIFFTSK 95
GVF + F ++ + KK Q+KR++ + F ++ I +K
Sbjct: 70 GVFWAMKDFLWLLKAIKKHQIKRLILEKQDFRSFLLSQFVSITTPNK 116
>ref|NP_224061.1| putative Inner membrane protein [Helicobacter pylori J99]
Length = 549
Score = 23.1 bits (48), Expect = 5.0
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 10/47 (21%)
Query: 4 IAFFIFVILFSVGIYLIW----------HVLLEKALELKLATSANDL 40
+ F IF+I F G+ L W +++ K LE K A ++
Sbjct: 501 LLFTIFLITFPAGLVLYWTTHNILSVLQQLIINKVLENKKRAHAQNI 547
>ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 620
Score = 23.1 bits (48), Expect = 5.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 60 IISSYKKRQLKRILQKIDAMNGFEFE 85
I + KR LKR K+DA++ EF+
Sbjct: 548 IFNDLNKRILKRADNKMDAIHSEEFQ 573
>ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Helicobacter pylori J99]
Length = 425
Score = 23.1 bits (48), Expect = 5.0
Identities = 14/46 (30%), Positives = 23/46 (49%)
Query: 53 MLVLFQGIISSYKKRQLKRILQKIDAMNGFEFEEYSKIFFTSKGFE 98
+L+L G I++YK +L R+L K A + ++ F FE
Sbjct: 19 VLLLVSGSIAAYKSLELVRLLFKSGASIQVVMSKGAQKFIKPLSFE 64
>ref|NP_223970.1| co-chaperone with DnaK [Helicobacter pylori J99]
Length = 369
Score = 22.7 bits (47), Expect = 6.5
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 29 LELKLATSANDLLLKLLAILGVF--------SMLVLFQGIISSYKKRQLKRILQKIDAMN 80
LELK+ +A D GV S++V Q I ++ + +L+K+ A
Sbjct: 287 LELKIPRNAKDRQAFAFRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQGLLEKLHASF 346
Query: 81 GFEFEEYSKIFFT 93
G+E E + + T
Sbjct: 347 GYEGEPHKSVLET 359
>ref|NP_223538.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 373
Score = 22.7 bits (47), Expect = 6.5
Identities = 10/29 (34%), Positives = 16/29 (54%)
Query: 61 ISSYKKRQLKRILQKIDAMNGFEFEEYSK 89
+S+ +LKR + A +G EF + SK
Sbjct: 62 LSAENAEKLKRTISPFSAFSGIEFCDISK 90
>ref|NP_223272.1| putative efflux transporter [Helicobacter pylori J99]
Length = 1028
Score = 22.7 bits (47), Expect = 6.5
Identities = 8/27 (29%), Positives = 16/27 (58%)
Query: 61 ISSYKKRQLKRILQKIDAMNGFEFEEY 87
++ Y K +K +LQKI+ + G + +
Sbjct: 150 LNDYAKNTIKPMLQKINGVGGVQLNGF 176
>ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 701
Score = 22.3 bits (46), Expect = 8.5
Identities = 15/46 (32%), Positives = 24/46 (51%)
Query: 40 LLLKLLAILGVFSMLVLFQGIISSYKKRQLKRILQKIDAMNGFEFE 85
L LK+ ++ +FS+ + G + R+L L KI A G EF+
Sbjct: 471 LSLKIDSLFSLFSVGKIPSGSKDPFALRRLSFGLLKIIAHYGLEFD 516
>ref|NP_223225.1| putative [Helicobacter pylori J99]
Length = 26
Score = 22.3 bits (46), Expect = 8.5
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 8 IFVILFSVGIYLIWHVL 24
I++ILF + IYL++ +L
Sbjct: 4 IYLILFLIVIYLLYRIL 20
>ref|NP_223035.1| putative [Helicobacter pylori J99]
Length = 266
Score = 22.3 bits (46), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 71 RILQKIDAMNGFEFEEYSKIFFTSKG 96
+++Q+I A NG EY K F KG
Sbjct: 110 KVIQEI-AQNGLILSEYEKDFMPIKG 134
>ref|NP_222973.1| putative [Helicobacter pylori J99]
Length = 409
Score = 22.3 bits (46), Expect = 8.5
Identities = 6/36 (16%), Positives = 17/36 (46%)
Query: 137 IQEVVSSKAYYACEKACVITNSYFTQAAQKLAQANE 172
+QE++ + + C + C + Y +K+ + +
Sbjct: 1 MQEIIGASLVFLCNEKCEVLEDYGVVFDEKIVEIGD 36
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.325 0.139 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 191,316
Number of Sequences: 1491
Number of extensions: 8160
Number of successful extensions: 58
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 21
length of query: 189
length of database: 494,079
effective HSP length: 73
effective length of query: 116
effective length of database: 385,236
effective search space: 44687376
effective search space used: 44687376
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)