BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645699|ref|NP_207876.1| hypothetical protein
[Helicobacter pylori 26695]
(171 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223059.1| putative [Helicobacter pylori J99] 340 2e-95
ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobact... 25 0.86
ref|NP_223410.1| putative [Helicobacter pylori J99] 24 1.9
ref|NP_223075.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 24 2.5
ref|NP_223245.1| putative [Helicobacter pylori J99] 23 3.3
ref|NP_222886.1| putative [Helicobacter pylori J99] 23 5.6
ref|NP_222732.1| DNA PRIMASE [Helicobacter pylori J99] 23 5.6
ref|NP_222941.1| putative [Helicobacter pylori J99] 22 9.5
>ref|NP_223059.1| putative [Helicobacter pylori J99]
Length = 169
Score = 340 bits (871), Expect = 2e-95
Identities = 164/169 (97%), Positives = 168/169 (99%)
Query: 3 LKNLSTLLVFLFFCLGCVSNFNEDTYTLDLVLEKKIQASRKGEITQDNVPIITAIATHLN 62
+KNLSTLLVFLFFCLGCVSNFNEDTYTLDLVLEKKIQASRKGEITQDNVPIITAIATHLN
Sbjct: 1 MKNLSTLLVFLFFCLGCVSNFNEDTYTLDLVLEKKIQASRKGEITQDNVPIITAIATHLN 60
Query: 63 DVDSGTYYDHEYFLVEIFTQNNDWIDDGYISYELFGTKPIGSEPLWVREITKDEFDGILE 122
DVDSGTYYDHEYFLVEIFTQNNDWIDDGYISYELFGTKP GSEPLWVREIT+DEFDGILE
Sbjct: 61 DVDSGTYYDHEYFLVEIFTQNNDWIDDGYISYELFGTKPTGSEPLWVREITRDEFDGILE 120
Query: 123 TTNRWSRAFLLAFNKLDYLAVQEAKLELDAYSLGKIVFNFAYQVPLPQF 171
TTNRWSRAFL+AF+KLDYLAVQEAKLELDAYSLGKIVFNFAYQVPLPQF
Sbjct: 121 TTNRWSRAFLIAFDKLDYLAVQEAKLELDAYSLGKIVFNFAYQVPLPQF 169
>ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobacter pylori J99]
Length = 644
Score = 25.4 bits (54), Expect = 0.86
Identities = 13/54 (24%), Positives = 22/54 (40%)
Query: 20 VSNFNEDTYTLDLVLEKKIQASRKGEITQDNVPIITAIATHLNDVDSGTYYDHE 73
+ +F++D L + + K I ++P IT D D +YD E
Sbjct: 186 IKDFSKDCLDLAQYYAQLKASDFKDRINYSHIPFITIDPKDAKDFDDAIFYDKE 239
>ref|NP_223410.1| putative [Helicobacter pylori J99]
Length = 235
Score = 24.3 bits (51), Expect = 1.9
Identities = 22/68 (32%), Positives = 32/68 (46%), Gaps = 3/68 (4%)
Query: 100 KPIGSEPLWVREIT--KDEFDGILETTNRWSRAFLLAFNKLDYLAVQEAKLELD-AYSLG 156
+ IGSE + ++ +D + GI R AFL +FN DY + + +L SL
Sbjct: 66 RQIGSERIGESKVLVLQDLYKGIQALNCRIDEAFLNSFNFRDYDYILDCMDDLPIKTSLA 125
Query: 157 KIVFNFAY 164
NFAY
Sbjct: 126 IKCQNFAY 133
>ref|NP_223075.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 632
Score = 23.9 bits (50), Expect = 2.5
Identities = 12/63 (19%), Positives = 29/63 (45%)
Query: 76 LVEIFTQNNDWIDDGYISYELFGTKPIGSEPLWVREITKDEFDGILETTNRWSRAFLLAF 135
L+ + Q N ++ GY S F K L+++ + ++ + + +T + + A +
Sbjct: 534 LMVLEKQRNAFLGGGYGSSREFSEKTAEEMDLFIKNLLEERYQHVKQTLSDYREAIEIMV 593
Query: 136 NKL 138
+L
Sbjct: 594 KEL 596
>ref|NP_223245.1| putative [Helicobacter pylori J99]
Length = 372
Score = 23.5 bits (49), Expect = 3.3
Identities = 17/46 (36%), Positives = 25/46 (53%), Gaps = 7/46 (15%)
Query: 88 DDGYISYELFGTKPIGSEPLWVREITKDEFDGILETTNRWSRAFLL 133
+D +S GTK G+ + +I+ + FD TNRWS AF+L
Sbjct: 73 NDNLLSAYFSGTKE-GARDV---KISANLFDS---KTNRWSEAFIL 111
>ref|NP_222886.1| putative [Helicobacter pylori J99]
Length = 406
Score = 22.7 bits (47), Expect = 5.6
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 87 IDDGYISYELFGT-KPIGSEPLWVREITKDEFDGILETTNRWSRAFLLAFNKLD 139
+D Y Y + G + + +++I E+ LET FL+ FN+ +
Sbjct: 288 LDAKYYKYGISGVASDLPNSASIIKQIVYGEYAAKLETKKEVYNIFLMPFNRFN 341
>ref|NP_222732.1| DNA PRIMASE [Helicobacter pylori J99]
Length = 559
Score = 22.7 bits (47), Expect = 5.6
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Query: 63 DVDSGTYYDH--EYFLVEI 79
+ D G YYDH +Y L+E+
Sbjct: 95 EYDKGVYYDHKEDYHLLEM 113
>ref|NP_222941.1| putative [Helicobacter pylori J99]
Length = 355
Score = 21.9 bits (45), Expect = 9.5
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 15 FCLGCVSNFNEDTYTLDLVLEKKIQASRKGEIT 47
+ CV E Y L ++ ++KI+ + +T
Sbjct: 122 YAKACVLKHPESCYNLGIIYDRKIKGNAAQAVT 154
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.141 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 188,559
Number of Sequences: 1491
Number of extensions: 8266
Number of successful extensions: 26
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 9
length of query: 171
length of database: 494,079
effective HSP length: 72
effective length of query: 99
effective length of database: 386,727
effective search space: 38285973
effective search space used: 38285973
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)