BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644740|ref|NP_206910.1| co-chaperone and heat shock
protein (grpE) [Helicobacter pylori 26695]
(189 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222823.1| 24kDa chaperone [Helicobacter pylori J99] 347 9e-98
ref|NP_223176.1| putative [Helicobacter pylori J99] 32 0.011
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 30 0.041
ref|NP_224090.1| putative [Helicobacter pylori J99] 29 0.091
ref|NP_223788.1| putative [Helicobacter pylori J99] 28 0.12
ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helic... 28 0.12
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 27 0.26
ref|NP_223761.1| putative [Helicobacter pylori J99] 27 0.45
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 26 0.59
ref|NP_223383.1| putative [Helicobacter pylori J99] 26 0.77
ref|NP_223702.1| putative [Helicobacter pylori J99] 25 1.0
ref|NP_223474.1| putative TYPE II DNA MODIFICATION ENZYME (... 25 1.0
ref|NP_224167.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobac... 25 1.7
ref|NP_223203.1| cag island protein [Helicobacter pylori J99] 25 1.7
ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter py... 24 2.2
ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helic... 24 2.9
ref|NP_223830.1| putative [Helicobacter pylori J99] 24 2.9
ref|NP_223664.1| putative [Helicobacter pylori J99] 24 2.9
ref|NP_223446.1| putative [Helicobacter pylori J99] 24 2.9
ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 24 2.9
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 23 3.8
ref|NP_222912.1| putative [Helicobacter pylori J99] 23 3.8
ref|NP_222846.1| putative [Helicobacter pylori J99] 23 5.0
ref|NP_223125.1| amino acid permease [Helicobacter pylori J99] 23 6.5
ref|NP_223915.1| putative [Helicobacter pylori J99] 22 8.5
ref|NP_223724.1| putative [Helicobacter pylori J99] 22 8.5
ref|NP_223112.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobact... 22 8.5
ref|NP_222895.1| putative [Helicobacter pylori J99] 22 8.5
ref|NP_222894.1| putative [Helicobacter pylori J99] 22 8.5
>ref|NP_222823.1| 24kDa chaperone [Helicobacter pylori J99]
Length = 191
Score = 347 bits (891), Expect = 9e-98
Identities = 177/191 (92%), Positives = 181/191 (94%), Gaps = 2/191 (1%)
Query: 1 MKDEHNQEHDHLSQKEPEFCEKA--CKEQQYEEKQEAGEKEGEIKEDFELKYKEMHEKYL 58
MKDEHNQEHDHLS KEPE +KA CKEQQ EEKQEA EKEGEIKEDFELKY+EM E+YL
Sbjct: 1 MKDEHNQEHDHLSPKEPESYQKAYACKEQQGEEKQEASEKEGEIKEDFELKYQEMREQYL 60
Query: 59 RVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGAHKSAAEEDKESALTKGLE 118
RVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGAHKSA E DKESALTKGLE
Sbjct: 61 RVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGAHKSAVEVDKESALTKGLE 120
Query: 119 LTMEKLHEVLARHGIEGIECLEEFDPHFHNAIMQVKSEEKENGKIVQVLQQGYKYKGRVL 178
LTMEKLHEVLARHGIEGIECLEEFDP+FHNAIMQVKSEEKENGKIVQVLQQGYKYKGRVL
Sbjct: 121 LTMEKLHEVLARHGIEGIECLEEFDPNFHNAIMQVKSEEKENGKIVQVLQQGYKYKGRVL 180
Query: 179 RPAMVSIAKND 189
RPAMVSIAKND
Sbjct: 181 RPAMVSIAKND 191
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 32.0 bits (71), Expect = 0.011
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 3 DEHNQEHDHLSQKEPEFCEKACKEQQYEEKQEAGEKEGEIKED 45
+E +EHD +KE E KA + + EK A E E EI ++
Sbjct: 322 EEREKEHDERDEKETEERRKALEMDKGNEKVNAKENEREINQE 364
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 30.0 bits (66), Expect = 0.041
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 14 QKEPEFCEKACKEQQYEEKQEAGEKEGEIKED---FELKY---KEMHEKYLRVHADFENV 67
+ E + E KE ++ QE ++ ++KE+ E ++ KE+ ++ R+ + E +
Sbjct: 420 EMEKQALEMENKESNHKRMQEILKELSDLKEEKIQLEAQFENEKEVFKEISRLKMEMEGL 479
Query: 68 KKRLER-----DKSMALEYAYEKI 86
KK ER D A E Y KI
Sbjct: 480 KKEAERFKRNGDYQQAAEIEYSKI 503
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 28.9 bits (63), Expect = 0.091
Identities = 24/89 (26%), Positives = 37/89 (40%), Gaps = 4/89 (4%)
Query: 30 EEKQEAGEKEGEIKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEYAYEK---- 85
EE+ EK GE K + E K +H K + E +++ K + + K
Sbjct: 4 EEQNSLEEKGGENKNEKETPLKGIHSKIPSLKQALEQTISKIKSSKEFFKQLLHNKKKLY 63
Query: 86 IALDLLPVIDALLGAHKSAAEEDKESALT 114
IAL +L + AL+ A KE+ T
Sbjct: 64 IALGILLSLIALIVALSLLLGHKKENKQT 92
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 28.5 bits (62), Expect = 0.12
Identities = 30/123 (24%), Positives = 53/123 (42%), Gaps = 4/123 (3%)
Query: 7 QEHDHLSQKEPEFCEKACKEQQYEEKQEAGEKEGEIKEDFELKYKEMHEKYLRVHADFEN 66
QE+ + K P+ C++ + KQ E + + KE++EK + + F+N
Sbjct: 2 QENQTIPFKCPK-CQEPINVSEALYKQIESENQSRFLAQQKAFEKEVNEKRAQYQSYFKN 60
Query: 67 VKKRLERDKSMALEYAYEKIALDLLPVIDALLGAHKSAAEEDKESAL---TKGLELTMEK 123
++++ E K A E + AL EE +++A KGLEL ++
Sbjct: 61 LEQKEEALKERAKEQQAQFDEAVKQASALALQDERAKIIEEARKNAFLEQQKGLELLQKE 120
Query: 124 LHE 126
L E
Sbjct: 121 LDE 123
Score = 24.6 bits (52), Expect = 1.7
Identities = 28/146 (19%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 2 KDEHNQEHDHLSQKEPEFCEKACKEQQYEEKQEAGEKEGEIKEDFELKYKEMHEKYL--R 59
K+ ++ L + E EK+ + Q+ +K+ E+ + E + K +EK L +
Sbjct: 104 KNAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEK 163
Query: 60 VHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGAHKSAAE---EDKESALTKG 116
+ + E ++K L + + E++ + + +A A S+ + E +E A+ +
Sbjct: 164 LELEREKIEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQELAIEEF 223
Query: 117 L--ELTMEKLHEVLARHGIEGIECLE 140
L + ++ + E+ + G G +C++
Sbjct: 224 LRQKFPLDSVEEI--KKGQRGGDCIQ 247
>ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helicobacter pylori J99]
Length = 258
Score = 28.5 bits (62), Expect = 0.12
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 17/125 (13%)
Query: 11 HLSQKEPEFCEKACKEQQY------EEKQEAGEKEGEIKEDFELKYKEMHEKYLRVHA-D 63
HL + + +F EKA +E + + + G KEGE K EL + EK +HA
Sbjct: 74 HLVKLQMQF-EKAQEESKVLIENAKNDGYKIGFKEGEEKMRNELTHSVNEEKNQLLHAIT 132
Query: 64 FENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGAHKSAAEEDKESALTKGLELTMEK 123
+ K + + MALE IA+D+ A + +E ++++ L L E
Sbjct: 133 ALDEKMKSSENHLMALEKELSAIAIDI---------AKEVILKEVEDNSQKVALALAEEL 183
Query: 124 LHEVL 128
L VL
Sbjct: 184 LKNVL 188
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 27.3 bits (59), Expect = 0.26
Identities = 34/166 (20%), Positives = 72/166 (42%), Gaps = 29/166 (17%)
Query: 12 LSQKEPEFCEKACKEQQ--------YEEKQEAGEKEGEIKEDFELKYKEMHEKYLRVHAD 63
L Q+E + E+ K + + ++ GE+E + FE + + Y++
Sbjct: 119 LDQEESQLRERILKRKNEKIILNVNFIGEEVLGEEEASAR--FEKYSQALKSNYIQ---- 172
Query: 64 FENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGAHKSAAEEDKESALTK-------- 115
+ ++K + L++ Y K +++ +DAL + A EE+K+ + K
Sbjct: 173 YISIKITTIFSQINILDFEYSK--KEIVKRLDAL---YALALEEEKKQGMPKFINLDMEE 227
Query: 116 --GLELTMEKLHEVLARHGIEGIECLEEFDPHFHNAIMQVKSEEKE 159
LELT+E E +A+ + L+ + P + + ++ + KE
Sbjct: 228 FRDLELTVESFMESIAKFDLNAGIVLQAYIPDSYEYLKKLHAFSKE 273
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 26.6 bits (57), Expect = 0.45
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 3 DEHNQEHDHLSQKEPEFCEKACK---EQQYEEKQEAGEKEGEIKEDFELKYKEMHEK 56
+E + HLS E EK K EQ E++ KE E+K LK K HE+
Sbjct: 297 NETTPKPTHLSPLELANAEKLAKLESEQLQSEQEFLKAKEQELKRKEALKKKLEHER 353
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 26.2 bits (56), Expect = 0.59
Identities = 15/56 (26%), Positives = 30/56 (52%), Gaps = 4/56 (7%)
Query: 27 QQYEEKQEAGEKEGEIKEDFELKYKEMHEK----YLRVHADFENVKKRLERDKSMA 78
++ EE+++A EKE E KE + K+ EK + A+ EN+ + ++++
Sbjct: 139 KELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQNLS 194
>ref|NP_223383.1| putative [Helicobacter pylori J99]
Length = 338
Score = 25.8 bits (55), Expect = 0.77
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 115 KGLELTMEKLHEVLARHGIEGIECLEEFDPHFHNAIMQVKSEEKENGKIVQVLQQ 169
K L+ E+L+ ++ + GI F H HNA+ V K+ G ++ LQ+
Sbjct: 207 KFLDKEKERLYPLIPVSQMHGIT----FFKHSHNALFMVDKILKKKGYVLSFLQK 257
>ref|NP_223702.1| putative [Helicobacter pylori J99]
Length = 616
Score = 25.4 bits (54), Expect = 1.0
Identities = 35/139 (25%), Positives = 55/139 (39%), Gaps = 11/139 (7%)
Query: 61 HADFENVKKRLERDKSMALEYAYEKI----ALDLLPVIDALLGAHKSAAEEDK------E 110
HA F N RD + +EY E AL V DAL A A K
Sbjct: 391 HAIFVNEDAPNLRDTNAIIEYILENFSKENALISQGVCDALDHASPEYAMGGKLGIDATS 450
Query: 111 SALTKGLELTMEKLHEVLARHGIEGIECLEEFDPHFHNAIMQVKSEEKENGKIVQVLQQG 170
+ T L + L + ++ I L+++ PH N I V S EK++ ++++ +
Sbjct: 451 KSNTPYPTLLNDNALLALLQDKMQNIVLLKQYYPHTRNPIC-VISVEKKDKSVIELAKNL 509
Query: 171 YKYKGRVLRPAMVSIAKND 189
++ + V A ND
Sbjct: 510 LGFEEHLRIVIFVEHASND 528
>ref|NP_223474.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 272
Score = 25.4 bits (54), Expect = 1.0
Identities = 14/48 (29%), Positives = 25/48 (51%)
Query: 113 LTKGLELTMEKLHEVLARHGIEGIECLEEFDPHFHNAIMQVKSEEKEN 160
L+KG T L E AR+G+E + + D + + ++K E+ +N
Sbjct: 133 LSKGKPKTFNPLKEPTARNGMEMLVTNKGADAKNNKILKELKKEKTKN 180
>ref|NP_224167.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 526
Score = 24.6 bits (52), Expect = 1.7
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 86 IALDLLPVIDALLGAHKSAAEEDKESALTKGLELTMEKLHEVL--ARHGIEGI--ECLEE 141
+ LDL ++ LLG A ++K +L LE +K + +L + +EGI E L+E
Sbjct: 36 LGLDLRGGLNMLLGVQTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGISFELLDE 95
>ref|NP_223203.1| cag island protein [Helicobacter pylori J99]
Length = 376
Score = 24.6 bits (52), Expect = 1.7
Identities = 10/29 (34%), Positives = 18/29 (61%)
Query: 46 FELKYKEMHEKYLRVHADFENVKKRLERD 74
F + +++EKYLR + F N+ K ++ D
Sbjct: 255 FSMAIDKINEKYLRGYEAFSNLLKNVKDD 283
>ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 920
Score = 24.3 bits (51), Expect = 2.2
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 38 KEGEIKEDFELKYKEMHEKYLRVHADFE-NVKKRLERDKSMALEYAYEKIALDLLPVIDA 96
K+G +KE ++K ++ Y A E V+ ++++ S+ + + +K L+ L V A
Sbjct: 175 KKGLLKE----RHKPIYWSYACESALAEAEVEYKMKKSPSIFVAFDLKKEGLEKLKVKKA 230
Query: 97 LLGAHKS-----------AAEEDKESALTKGLELTMEKLHEVLARHGIEGIECLEEFD 143
L + A ++D ALT+ L + LHE LA G+ EF+
Sbjct: 231 SLVIWTTTPWTLYANVAIALKKDAVYALTQKGYLVAKALHEKLAALGVVDNAITHEFN 288
>ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 681
Score = 23.9 bits (50), Expect = 2.9
Identities = 11/31 (35%), Positives = 19/31 (60%), Gaps = 4/31 (12%)
Query: 18 EFCEKACKE----QQYEEKQEAGEKEGEIKE 44
+FCE+ +E + YE++ E+EG +KE
Sbjct: 462 KFCERFLEETNLLKSYEKEDNYEEREGFVKE 492
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 23.9 bits (50), Expect = 2.9
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 3 DEHNQEHDHLSQKEPEFCEKACKEQQYEEKQEAGEKEGEIKEDFELKYKEMHEKYLRVHA 62
D+ +++ +QKE E + E +QE + E E ++ + K K EK
Sbjct: 96 DDQSKKEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQ---KT 152
Query: 63 DFENVKKRLERDKSMALE 80
+ E K E+ K+ +E
Sbjct: 153 EQEKQKTEQEKQKTSNIE 170
>ref|NP_223664.1| putative [Helicobacter pylori J99]
Length = 466
Score = 23.9 bits (50), Expect = 2.9
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 4 EHNQEHDHLSQKEPEFCEKACKEQQYEEKQEAGEKEGEIKEDFELKYKE 52
E+ Q +D +Q + + C E ++ Q+A E + + F K KE
Sbjct: 125 ENAQNYDIRNQIAAKRISEKCPELNWDVSQDASPTEKNLHQFFTSKGKE 173
>ref|NP_223446.1| putative [Helicobacter pylori J99]
Length = 506
Score = 23.9 bits (50), Expect = 2.9
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 101 HKSAAEEDKESALTKGLELTMEKLHEVLARHGIEGIECLEEFDPHFHNAIMQVKSEEKEN 160
H+SA++ S++ L K E+ H G+ +E PHF I++ E EN
Sbjct: 279 HQSASK----SSILGSSSLREPKPGEIALAHN--GMLFFDEL-PHFKKDILEALREPLEN 331
Query: 161 GKIV 164
K+V
Sbjct: 332 NKLV 335
>ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 742
Score = 23.9 bits (50), Expect = 2.9
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 29 YEEKQEAGEKEGEIKEDFELKYKEMHEKYLRVHA----DFENVKKRL--ERDKSMALEYA 82
YEE + E K +L MH+K+L A D +K++ ++ K ++++
Sbjct: 356 YEEHHQVRYNESVFKACVDLTSYYMHDKFLPDKAIELLDEVGSRKKINPKKGKKISVDDV 415
Query: 83 YEKIALDLLPVIDALLGAHKSAAEEDKESALTKGLELTMEKLHEV 127
E +AL L + L + K A + E +L + E ++ V
Sbjct: 416 QETLALK-LKIPKMRLNSDKKALLRNLEKSLKNKIFAQTEAINLV 459
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 23.5 bits (49), Expect = 3.8
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 19 FCEKACKEQQYEEKQEAGEKEGEIKE--DFELKYKEMHEKYLRVHADFENVKKRLERDKS 76
F E+ E ++ EAG K E ++ + H YL + FEN K E +
Sbjct: 681 FVEENLTECTHKLPTEAGFKALEFDHLTNYFTNDRANHRGYLLGTSHFENSAKECEATEC 740
Query: 77 MALEYAYEKIALD 89
++ EKIA +
Sbjct: 741 EPIKPLKEKIAFN 753
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 23.5 bits (49), Expect = 3.8
Identities = 10/22 (45%), Positives = 15/22 (67%)
Query: 26 EQQYEEKQEAGEKEGEIKEDFE 47
++Q+ E + EK EIK+DFE
Sbjct: 215 KRQFNEFESNIEKHDEIKKDFE 236
>ref|NP_222846.1| putative [Helicobacter pylori J99]
Length = 211
Score = 23.1 bits (48), Expect = 5.0
Identities = 15/52 (28%), Positives = 25/52 (47%), Gaps = 6/52 (11%)
Query: 118 ELTMEKLHEVLARHGIEGIECLEEFDPHFHNAIMQVKSEEKENGKIVQVLQQ 169
EL ++++ E A+H I+G +P + N I + E K QVL +
Sbjct: 4 ELILKRIKEARAKHAIQGA------NPIYRNIIKVEFEDLVEEYKHFQVLNK 49
>ref|NP_223125.1| amino acid permease [Helicobacter pylori J99]
Length = 475
Score = 22.7 bits (47), Expect = 6.5
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 31 EKQEAGEKEGEIKEDFELKY 50
E Q +K+GE+K D ++++
Sbjct: 2 EHQNTTQKQGELKRDMKMRH 21
>ref|NP_223915.1| putative [Helicobacter pylori J99]
Length = 123
Score = 22.3 bits (46), Expect = 8.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 25 KEQQYEEKQEAGEKEGEIKEDFELKYKEMHEKY 57
KE+ ++QE+ E+E E+ E+ +E+ E Y
Sbjct: 64 KEKSKAQQQESFEREKELMEEEFQVQRELLEIY 96
>ref|NP_223724.1| putative [Helicobacter pylori J99]
Length = 226
Score = 22.3 bits (46), Expect = 8.5
Identities = 17/62 (27%), Positives = 30/62 (47%), Gaps = 6/62 (9%)
Query: 102 KSAAEEDKESALTKGLELTME-----KLHEVLARHGIEGIECLEEFDPHFHNAIMQVKSE 156
KSA+ D + L G T E K H +L G++ +E + H +++++K+
Sbjct: 31 KSASRLDLRN-LKDGFLYTYEHAEIAKKHALLRLVGVQPLEIMANKKTHLILSVIEIKNI 89
Query: 157 EK 158
EK
Sbjct: 90 EK 91
>ref|NP_223112.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
Length = 354
Score = 22.3 bits (46), Expect = 8.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 92 PVIDALLGAHKSAAEEDKE 110
P+ID LLG SA ++++E
Sbjct: 127 PMIDRLLGGKGSAYDQNRE 145
>ref|NP_222895.1| putative [Helicobacter pylori J99]
Length = 567
Score = 22.3 bits (46), Expect = 8.5
Identities = 27/110 (24%), Positives = 44/110 (39%), Gaps = 10/110 (9%)
Query: 67 VKKRLERDKSMALEYAYEKIALDLLPVID-------ALLGAHKSAAEEDKESALTKGLEL 119
V K+ E DK +Y Y+K L L L A K ++ A T+G +
Sbjct: 87 VSKQYEEDKRETRKYLYQKGELKLEVASQNQSFFKTLLEVAEKGNISHCEKDADTEGKQN 146
Query: 120 TMEKLHEVLAR-HGIEGIECLEEFDPHFHNAIMQVKSEEKENGKIVQVLQ 168
E L +L + + E E + +M++ EE + GK ++ Q
Sbjct: 147 LFEVLKAILDKISKLSEEEVNERLEVLLKMVLMRL--EEPDPGKAIRTFQ 194
>ref|NP_222894.1| putative [Helicobacter pylori J99]
Length = 268
Score = 22.3 bits (46), Expect = 8.5
Identities = 19/69 (27%), Positives = 27/69 (38%)
Query: 8 EHDHLSQKEPEFCEKACKEQQYEEKQEAGEKEGEIKEDFELKYKEMHEKYLRVHADFENV 67
E SQKE + E Q E + A ++ K K KE H+ + A V
Sbjct: 121 EEKQESQKELKAVEPIPMSTQKESQAVAKKETPHKKPKVAPKDKEAHKDKAKHAAKEPKV 180
Query: 68 KKRLERDKS 76
KK ++ S
Sbjct: 181 KKEARKEVS 189
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.312 0.131 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,716
Number of Sequences: 1491
Number of extensions: 10117
Number of successful extensions: 51
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 30
length of query: 189
length of database: 494,079
effective HSP length: 73
effective length of query: 116
effective length of database: 385,236
effective search space: 44687376
effective search space used: 44687376
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 46 (22.3 bits)