BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645707|ref|NP_207884.1| hypothetical protein
[Helicobacter pylori 26695]
         (28 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223262.1|  PENICILLIN-BINDING PROTEIN [Helicobacter p...    21  6.5

>ref|NP_223262.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
          Length = 660

 Score = 20.8 bits (42), Expect = 6.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 4   SLIITETASTIASQTLMGISYHKRA 28
           S+I+TET++      + GI Y K A
Sbjct: 332 SMIVTETSTGKILALVGGIDYKKSA 356



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.315    0.122    0.311 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,840
Number of Sequences: 1491
Number of extensions: 189
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1
length of query: 28
length of database: 494,079
effective HSP length: 4
effective length of query: 24
effective length of database: 488,115
effective search space: 11714760
effective search space used: 11714760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 41 (20.4 bits)