BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645708|ref|NP_207885.1| hypothetical protein
[Helicobacter pylori 26695]
(118 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylo... 26 0.26
ref|NP_223245.1| putative [Helicobacter pylori J99] 25 0.77
ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99] 24 1.0
ref|NP_223761.1| putative [Helicobacter pylori J99] 23 2.2
ref|NP_223586.1| putative [Helicobacter pylori J99] 23 2.2
ref|NP_223158.1| putative [Helicobacter pylori J99] 23 2.2
ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 23 2.2
ref|NP_223005.1| DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEI... 23 2.9
ref|NP_223640.1| Component of conjugal plasmid transfer sys... 22 3.8
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 22 3.8
ref|NP_222895.1| putative [Helicobacter pylori J99] 22 3.8
ref|NP_222783.1| putative [Helicobacter pylori J99] 22 5.0
ref|NP_223267.1| ENDONUCLEASE III [Helicobacter pylori J99] 22 6.5
ref|NP_222739.1| putative chemotaxis protein [Helicobacter ... 22 6.5
ref|NP_223609.1| 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERA... 21 8.5
ref|NP_223520.1| putative [Helicobacter pylori J99] 21 8.5
ref|NP_223260.1| putative [Helicobacter pylori J99] 21 8.5
>ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 541
Score = 26.2 bits (56), Expect = 0.26
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 25 YEKDNELWALAKIYDIEAVLDLLNNEKSTSPAVYCYYEKDNAVIVDKPMLINHLAIVEQG 84
YEKD++ W + +Y E+ L+ +KS Y Y D V D+ N+ +
Sbjct: 272 YEKDSKTWLKSSLYQDESDRVLIKEDKS-----YTYLAGD-IVYHDEKFQQNYTKYI--N 323
Query: 85 HWDKKDRNSIDNSKINILDLNYPTAK 110
W I K ++ L Y ++K
Sbjct: 324 IWGADHHGYIARVKASLEFLGYDSSK 349
>ref|NP_223245.1| putative [Helicobacter pylori J99]
Length = 372
Score = 24.6 bits (52), Expect = 0.77
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 8/41 (19%)
Query: 6 LLFFKSNLILSFI-GTCLNAYEKDNELWALAKIYDIEAVLD 45
LLF N IL F+ G + WA +KIY E+ L+
Sbjct: 132 LLFLHDNKILLFVVGVSMGG-------WATSKIYQFESALE 165
>ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99]
Length = 621
Score = 24.3 bits (51), Expect = 1.0
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 12/48 (25%)
Query: 46 LLNNEK----STSPAVYCYYE--------KDNAVIVDKPMLINHLAIV 81
+L +EK +T+P+++ ++ KDN + +DK LI HL +
Sbjct: 49 MLTDEKLKGLNTTPSIHLSFDSQKKTLTIKDNGIGMDKSDLIEHLGTI 96
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 23.1 bits (48), Expect = 2.2
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 48 NNEKSTSPAVYCYYE---KDNAVIVDKPMLINHLAIVEQG-HWDKKDRNSIDNSKINILD 103
N+E + AV +YE K+ +D + + IV ++DK ++ +S + +L
Sbjct: 519 NSESDHAIAVLSHYEAKLKELEKKLDADSIYSLKNIVANNLNFDKATHPNVGDSNLALLM 578
Query: 104 LNYPTAKAIGLFL 116
N P K G+ L
Sbjct: 579 FNMPRTKTQGIEL 591
>ref|NP_223586.1| putative [Helicobacter pylori J99]
Length = 251
Score = 23.1 bits (48), Expect = 2.2
Identities = 19/68 (27%), Positives = 28/68 (40%), Gaps = 4/68 (5%)
Query: 26 EKDNELWALAKIYDIEAVLDLLNNEKSTSPAVYCYYEKDNAVIVDKPMLINH-LAIVEQG 84
E N ++A+I + L L NNE P E D + P+ I H + ++
Sbjct: 181 ESQNAAHSIAEIQSLLKQLSLKNNEIFLMPLGTTNNELDKNLKTLAPLAIEHGFRLSDRL 240
Query: 85 H---WDKK 89
H WD K
Sbjct: 241 HIRLWDNK 248
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 23.1 bits (48), Expect = 2.2
Identities = 17/74 (22%), Positives = 34/74 (44%), Gaps = 6/74 (8%)
Query: 48 NNEKSTSPAVYCYYEK-----DNAVIVDKPMLINHLAIVEQGHWDKKDRNSIDNSKINIL 102
N+E + AV +YE D + D + ++ + + ++DK ++ +S + +L
Sbjct: 439 NSESDHAIAVLSHYEAKLKELDKKLDADSIYSLKNI-VAKNLNFDKATHPNVGDSNLALL 497
Query: 103 DLNYPTAKAIGLFL 116
N P K G+ L
Sbjct: 498 MYNMPRTKTQGIEL 511
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 455
Score = 23.1 bits (48), Expect = 2.2
Identities = 11/56 (19%), Positives = 27/56 (47%)
Query: 40 IEAVLDLLNNEKSTSPAVYCYYEKDNAVIVDKPMLINHLAIVEQGHWDKKDRNSID 95
++A+ D N++K E+ + + + L +++ WD+K+ NS++
Sbjct: 129 LQALKDEANHKKEREKREVKQEEEIKDINAQLSKIRDSLKLIQNMFWDEKNPNSVN 184
>ref|NP_223005.1| DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN [Helicobacter pylori
J99]
Length = 334
Score = 22.7 bits (47), Expect = 2.9
Identities = 9/40 (22%), Positives = 20/40 (49%)
Query: 31 LWALAKIYDIEAVLDLLNNEKSTSPAVYCYYEKDNAVIVD 70
LWA+ ++ + ++ ++ + PA+ EK N +D
Sbjct: 10 LWAIPTLFGVSIIVFMMVHLVPGDPALVILGEKANQAAID 49
>ref|NP_223640.1| Component of conjugal plasmid transfer system [Helicobacter pylori
J99]
Length = 511
Score = 22.3 bits (46), Expect = 3.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 78 LAIVEQGHWDKKDRNSIDNSKIN 100
LA E +++K+D++ +D KIN
Sbjct: 214 LAKTETDNFNKQDKHKLDYRKIN 236
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 22.3 bits (46), Expect = 3.8
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 24 AYEKDNELWALAKIYDIEAVLDLLNNEKSTS 54
AY+ N LW + ++ + +A D N++ +TS
Sbjct: 402 AYDDVNNLWNIIRLKNTQATKD--NSKNATS 430
>ref|NP_222895.1| putative [Helicobacter pylori J99]
Length = 567
Score = 22.3 bits (46), Expect = 3.8
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 51 KSTSPAVYCYYEKDNAVIVDKPMLINHLAIVEQGHWDKKDRNSIDNSKINILDLNYP 107
K P EK++ + ++ L N + I + G D+KD + + N++ L P
Sbjct: 451 KKLIPGKQFSQEKEHIIPINLLDLDNEIEIQKLGFEDRKDLRAYIYTYGNLISLEKP 507
>ref|NP_222783.1| putative [Helicobacter pylori J99]
Length = 806
Score = 21.9 bits (45), Expect = 5.0
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 38 YDIEAVLDLLNNEKSTSPAVYCYYEKDNAVIVDKP 72
Y + + +LLNN A C E NA+ D P
Sbjct: 747 YHFDKLKELLNNHFKQCLAFRCNGENLNAIKSDLP 781
>ref|NP_223267.1| ENDONUCLEASE III [Helicobacter pylori J99]
Length = 218
Score = 21.6 bits (44), Expect = 6.5
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 41 EAVLDLLNNEKSTSPAVYCYYEKDNAVIVDK 71
E +LD K ++ A+ CY ++VDK
Sbjct: 121 EWLLDQKGIGKESADAILCYVCAKEVMVVDK 151
>ref|NP_222739.1| putative chemotaxis protein [Helicobacter pylori J99]
Length = 321
Score = 21.6 bits (44), Expect = 6.5
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 26 EKDNELWALAKIYDIEAVLDLLNNEKSTSPAVYCYYEKDNAVIVDKPMLINHLAIVEQGH 85
EK N+L L+KI+ + VL L ++ S + +K +D IN ++E
Sbjct: 182 EKHNDLETLSKIHSNQCVL-LADDSPSVLKTMQMILDKLGVKHID---FINGKTLLEHLF 237
Query: 86 WDKKDRNSIDNSKINILDLNYPTA 109
D + N + I DL P A
Sbjct: 238 NPTTD---VSNIGLIITDLEMPEA 258
>ref|NP_223609.1| 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE [Helicobacter pylori
J99]
Length = 393
Score = 21.2 bits (43), Expect = 8.5
Identities = 7/26 (26%), Positives = 16/26 (60%)
Query: 43 VLDLLNNEKSTSPAVYCYYEKDNAVI 68
V+D LN ++ + P + +Y K+ + +
Sbjct: 195 VVDFLNIKRFSKPVITSFYPKNPSAL 220
>ref|NP_223520.1| putative [Helicobacter pylori J99]
Length = 153
Score = 21.2 bits (43), Expect = 8.5
Identities = 18/59 (30%), Positives = 29/59 (48%), Gaps = 16/59 (27%)
Query: 61 YEKDNAVIVDKP--------MLINHLAIVEQ-----GHWDKKD-RNSIDNSKINILDLN 105
Y KDN VI+ KP + + + +++ + H KKD NS+ KI + DL+
Sbjct: 82 YAKDNQVIMAKPCKRLFNEGLYLQYRSVLRENRLLKNHLSKKDFENSL--LKIELRDLH 138
>ref|NP_223260.1| putative [Helicobacter pylori J99]
Length = 490
Score = 21.2 bits (43), Expect = 8.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 27 KDNELWALAKIYDIEAVLDLLNNE 50
KDN+L+A +K ++ V+D E
Sbjct: 426 KDNKLYAFSKEFNTLLVIDPTKEE 449
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.137 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,985
Number of Sequences: 1491
Number of extensions: 5956
Number of successful extensions: 22
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 18
length of query: 118
length of database: 494,079
effective HSP length: 67
effective length of query: 51
effective length of database: 394,182
effective search space: 20103282
effective search space used: 20103282
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 43 (21.2 bits)