BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645710|ref|NP_207887.1| IS605 transposase (tnpA)
[Helicobacter pylori 26695]
(142 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223545.1| IS606 TRANSPOSASE [Helicobacter pylori J99] 31 0.015
ref|NP_222734.1| putative [Helicobacter pylori J99] 23 2.4
ref|NP_223320.1| putative PROCESSING PROTEASE [Helicobacter... 23 4.2
ref|NP_222901.1| TRIOSE PHOPHATE ISOMERASE [Helicobacter py... 23 4.2
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 22 7.1
ref|NP_223447.1| POLYPEPTIDE DEFORMYLASE [Helicobacter pylo... 22 7.1
ref|NP_223242.1| METHYLENETETRAHYDROFOLATE DEHYDROGENASE/ME... 22 9.3
>ref|NP_223545.1| IS606 TRANSPOSASE [Helicobacter pylori J99]
Length = 64
Score = 30.8 bits (68), Expect = 0.015
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 79 MSISSIISRIKQITTYRVWRDKRFIPLLQKHFWKEKTFWTDGFFVCSIGEANPETIKAYI 138
MS+S +++ +K +++ R+ R F ++ W K W+ +F S G E IK YI
Sbjct: 1 MSVSKLVNSLKGVSS-RLTRQHHF-KSVEASLWG-KHLWSPSYFAGSCGGTPLEMIKQYI 57
Query: 139 ENQ 141
+ Q
Sbjct: 58 QEQ 60
>ref|NP_222734.1| putative [Helicobacter pylori J99]
Length = 275
Score = 23.5 bits (49), Expect = 2.4
Identities = 11/47 (23%), Positives = 25/47 (52%), Gaps = 2/47 (4%)
Query: 60 IAMESDI--DHLHLMVQYIPRMSISSIISRIKQITTYRVWRDKRFIP 104
IA+E D+ D HL+ + +P ++ + ++ + ++ + K F P
Sbjct: 78 IALECDVKYDEKHLVTKLVPNFFMAFNDASVRNLEATKLSQKKNFSP 124
>ref|NP_223320.1| putative PROCESSING PROTEASE [Helicobacter pylori J99]
Length = 435
Score = 22.7 bits (47), Expect = 4.2
Identities = 11/37 (29%), Positives = 23/37 (61%), Gaps = 2/37 (5%)
Query: 33 KKLLQGDLNNFIKSVIDEIATQSNFIIIAMESDIDHL 69
K+LL+ NF ++ ++++ T+ ++ ESD D+L
Sbjct: 126 KELLKSP--NFTQNALEKVKTRMLAQLLQKESDFDYL 160
>ref|NP_222901.1| TRIOSE PHOPHATE ISOMERASE [Helicobacter pylori J99]
Length = 234
Score = 22.7 bits (47), Expect = 4.2
Identities = 11/53 (20%), Positives = 26/53 (48%)
Query: 14 TNRSKHNLKAHLILVCKYRKKLLQGDLNNFIKSVIDEIATQSNFIIIAMESDI 66
T++ LK H +L+ +++L + +F+K D ++ I+ + D+
Sbjct: 74 TSKHLEELKIHTLLIGHSERRVLLKESPSFLKEKFDFFKGKNFKIVYCIGEDL 126
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 21.9 bits (45), Expect = 7.1
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 3 KNHYPLRGYISTNRSKHNLKAHLILVCKYRKKLLQGDLNN 42
K H ++ + TNR ++K H +VC +R L+ DLN+
Sbjct: 542 KYHGLIQAFSRTNRILDSVKTHGNIVC-FRD--LEQDLND 578
>ref|NP_223447.1| POLYPEPTIDE DEFORMYLASE [Helicobacter pylori J99]
Length = 174
Score = 21.9 bits (45), Expect = 7.1
Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 50 EIATQSNFIIIAMESDIDHLHLMVQYIPRMSI 81
+I S + +A++ +IDHL+ V ++ ++SI
Sbjct: 124 KILEASELLAVAIQHEIDHLN-GVLFVDKLSI 154
>ref|NP_223242.1| METHYLENETETRAHYDROFOLATE DEHYDROGENASE/METHENYLTETRAHYDROFOLATE
CYCLOHYDROLASE [Helicobacter pylori J99]
Length = 290
Score = 21.6 bits (44), Expect = 9.3
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 112 KEKTFWTDGFFVCSIGEANPETIKAYIENQG 142
K+ +F+T + +G P+ IKA + +G
Sbjct: 197 KDISFYTKNADIVCVGVGKPDLIKASMLKKG 227
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.325 0.139 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,383
Number of Sequences: 1491
Number of extensions: 5331
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 7
length of query: 142
length of database: 494,079
effective HSP length: 69
effective length of query: 73
effective length of database: 391,200
effective search space: 28557600
effective search space used: 28557600
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 44 (21.6 bits)