BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645719|ref|NP_207896.1| LPS biosynthesis protein
[Helicobacter pylori 26695]
(431 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223749.1| putative lipopolysaccharide biosynthesis p... 618 e-178
ref|NP_223748.1| putative lipopolysaccharide biosynthesis p... 540 e-155
ref|NP_224029.1| lipopolysaccharide biosynthesis protein [H... 101 4e-23
ref|NP_222868.1| putative lipopolysaccharide biosynthesis p... 98 4e-22
ref|NP_222915.1| putative lipopolysaccharide biosynthesis p... 97 8e-22
ref|NP_223538.1| putative lipopolysaccharide biosynthesis p... 91 4e-20
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 33 0.014
ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 32 0.041
ref|NP_222726.1| Carbonic anhydrase [Helicobacter pylori J99] 28 0.59
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 27 1.0
ref|NP_223701.1| D-3-PHOSPHOGLYCERATE DEHYDROGENASE [Helico... 26 2.3
ref|NP_223700.1| putative [Helicobacter pylori J99] 25 3.0
ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori ... 25 3.0
ref|NP_222891.1| LYSYL-TRNA SYNTHETASE [Helicobacter pylori... 25 3.9
ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter p... 25 5.0
ref|NP_224088.1| putative [Helicobacter pylori J99] 25 5.0
ref|NP_223461.1| IRON(III) DICITRATE TRANSPORT PROTEIN [Hel... 25 5.0
ref|NP_223069.1| putative [Helicobacter pylori J99] 25 5.0
ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 24 6.6
ref|NP_223787.1| putative [Helicobacter pylori J99] 24 8.6
>ref|NP_223749.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 398
Score = 618 bits (1593), Expect = e-178
Identities = 315/431 (73%), Positives = 340/431 (78%), Gaps = 35/431 (8%)
Query: 1 MTSASSHSFKEQDFHIPIAFAFDKNYLIPAGACLYSLLESIAKANKKIRYTLHALVVGLN 60
MTSASSHSFKEQDFHIPIAFAFDKNYLIPAGAC+YSLLESIAKANKKIRYTLHALVVGLN
Sbjct: 1 MTSASSHSFKEQDFHIPIAFAFDKNYLIPAGACIYSLLESIAKANKKIRYTLHALVVGLN 60
Query: 61 EEDKAKLNQITEPFKEFAALEVRDIESFLDTIPNPFDEDFTKRFSKMVLVKYFLADLFPK 120
EEDK KLNQITEPFKEFA LEV+DIE FLDTIPNPFDEDFTKRFSKMVLVKYFLADLFPK
Sbjct: 61 EEDKTKLNQITEPFKEFAVLEVKDIEPFLDTIPNPFDEDFTKRFSKMVLVKYFLADLFPK 120
Query: 121 YSKMVWSDVDVIFCNEFSADFLNLEENDENYFYGVLEVEKHHMMEGFLFCNLDYQRKKNF 180
YSKMVWSDVDVIFCNEFSADFLN++ENDENYFYGVLEVEKHHMMEGFLFCNLDYQRKKNF
Sbjct: 121 YSKMVWSDVDVIFCNEFSADFLNIKENDENYFYGVLEVEKHHMMEGFLFCNLDYQRKKNF 180
Query: 181 TLRMHELLRGNEAKGELDFTKWCWPNMKALGIEYCVFPYYYTIKDFSNAYLNENYKKTIL 240
TLRMHELL+GNEAKGELDFTKWCWPNMKALGIEYCVFPYYYTIKDFSNAYLNENYKKTIL
Sbjct: 181 TLRMHELLKGNEAKGELDFTKWCWPNMKALGIEYCVFPYYYTIKDFSNAYLNENYKKTIL 240
Query: 241 EARENPTIIHYDAWWGAVKPWDYPFGLKADLWLNALAKTPFMSDWIDSIARVEIGSEKWH 300
EARENPTIIHYDAWWGAVKPWDYPFGLKADLWLNALAKTPFMSD+ + E
Sbjct: 241 EARENPTIIHYDAWWGAVKPWDYPFGLKADLWLNALAKTPFMSDYTKKMHTNE------S 294
Query: 301 RYHSIVAYHYYFPLWKTEEQIAHDALKTFLDHYFSCIHAAIKQENLGMFLNHYFSHAHA- 359
Y + +A +YF K+ ++I A F Y + K+ + H+
Sbjct: 295 FYTTKMAEQHYFSSVKSSKEIVFKAPYLFFKSY---LFVVFKERKI---------HSRVF 342
Query: 360 EIKENSLEMFLNHYFSHVYRLPKKARKRLFRVFVKHCILIPLKSLVGKTLRLLKLHALAK 419
E+ N ++ F N V+ +PK KR V K LR+L LH + K
Sbjct: 343 ELTCNLVKKFFNKLIYFVFLMPKALVKR----------------AVSKILRVLGLHGIVK 386
Query: 420 KILIQLKLLKK 430
KILI+LKLLKK
Sbjct: 387 KILIKLKLLKK 397
>ref|NP_223748.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 393
Score = 540 bits (1391), Expect = e-155
Identities = 281/434 (64%), Positives = 315/434 (71%), Gaps = 49/434 (11%)
Query: 1 MTSASSHSFKEQDFHIPIAFAFDKNYLIPAGACLYSLLESIAKANKKIRYTLHALVVGLN 60
MTSASSHSFKEQDFHIPIAFAFDKNYLIPAGAC+YSLLESIAKANKKIRYTLHALVVGLN
Sbjct: 1 MTSASSHSFKEQDFHIPIAFAFDKNYLIPAGACIYSLLESIAKANKKIRYTLHALVVGLN 60
Query: 61 EEDKAKLNQITEPFKEFAALEVRDIESFLDTIPNPFDEDFTKRFSKMVLVKYFLADLFPK 120
EEDK KLNQITEPFKEFA LEV+DIE FLDTIPNPFDEDFTKRFSKMVLVKYFLADLFPK
Sbjct: 61 EEDKTKLNQITEPFKEFAVLEVKDIEPFLDTIPNPFDEDFTKRFSKMVLVKYFLADLFPK 120
Query: 121 YSKMVWSDVDVIFCNEFSADFLNLEENDENYFYGVLEVEKHHMMEGFLFCNLDYQRKKNF 180
YSKMVWSDVDVIFCNEFSADFLN++E+DENYFYGV + K + EGF +CNL YQRK F
Sbjct: 121 YSKMVWSDVDVIFCNEFSADFLNIKEDDENYFYGVYD--KIYPYEGFFYCNLTYQRKNQF 178
Query: 181 TLRMHELLRGNEAKGELDFTKWCWPNMKALGIEYCVFPYYYTI-KDFSNAYLNENYKKTI 239
++ E++R + E T++C + L IEYC+FP+YY++ ++ N Y TI
Sbjct: 179 CKKILEIIRAQKIDKEPQLTEFCRSKIAPLKIEYCIFPHYYSLSEEHLKGVANAIYHNTI 238
Query: 240 LEARENPTIIHYDAW-WGAVKPWDYPFGLKADLWLNALAKTPFMSDWIDSIARVE-IGSE 297
+A P +I YD+ + +KPW YPFGLKADLWLNALAKTPFMSDW I IG E
Sbjct: 239 KQALREPIVIQYDSHPYFQIKPWTYPFGLKADLWLNALAKTPFMSDWSYLITGGGGIGGE 298
Query: 298 KWHRYHSIVAYHYYFPLWKTEEQIAHDALKTFLDHYFSCIHAAIKQENLGMFLNHYFSHA 357
KWH YH I AYHYYFPLWK EEQIAHDALKTFL HYF H
Sbjct: 299 KWHYYHGIAAYHYYFPLWKAEEQIAHDALKTFL--------------------KHYFLHI 338
Query: 358 HAEIKENSLEMFLNHYFSHVYRLPKKARKRLFRVFVKHCILIPLKSLVGKTLRLLKLHAL 417
H +P+ AR+RLF K+CI IPLKS + KTL+ LKLHAL
Sbjct: 339 H--------------------EIPQNARRRLF----KYCISIPLKSFISKTLKFLKLHAL 374
Query: 418 AKKILIQLKLLKKS 431
KKILIQLKLLKK+
Sbjct: 375 VKKILIQLKLLKKN 388
>ref|NP_224029.1| lipopolysaccharide biosynthesis protein [Helicobacter pylori J99]
Length = 367
Score = 101 bits (251), Expect = 4e-23
Identities = 99/361 (27%), Positives = 154/361 (42%), Gaps = 81/361 (22%)
Query: 16 IPIAFAFDKNYLIPAGACLYSLLESIAK------------ANK----KIRYTLHALVVGL 59
IPI +FDKNY + AG LYSLL ++ +NK I Y +H LV G+
Sbjct: 11 IPIFMSFDKNYALGAGVSLYSLLSHASRHTSMIDFSPLNQSNKLLGANIVYKIHCLVKGV 70
Query: 60 NEEDKAKLNQITEPFKEFAALEVRDIESFLDTIPNPFDEDFTKRF-SKMVLVKYFLADLF 118
E + KL + EPFK+FA+LE DI S +I + +E +KR+ +VL + LA LF
Sbjct: 71 TLEQQNKLLKTIEPFKKFASLEFIDINSLDHSIESYLNESCSKRYGGLLVLCRLLLASLF 130
Query: 119 PKYSKMVWSDVDVIFCNEFSADFLNL---------------------------EENDENY 151
P YSK++ DVD +F + ++ + L E +N+
Sbjct: 131 PNYSKIISIDVDTVFLGDVASAYFALDNEPTKLLGMVRDTFSHLPFEAFCDFCERTCKNF 190
Query: 152 FYGVLEVEKHHMME-------GFLFCNLDYQRKKNFTLRMHELLRGNEAKGELDFTKWCW 204
+L ++ + GFL NLD R+ F E L+ +L + + C
Sbjct: 191 KIDLLRFSQNELKRIHQGFNMGFLVANLDLWRENGFEKIALEFLKTRGK--DLFYPEQCL 248
Query: 205 PNMKALGIEYCVFPYYYTIKDFSNAYLNENYKKTILEARENPTIIHYDAWWGAVKPWDYP 264
NM L + +Y DF E+Y K+I+ ++H+ + KPW
Sbjct: 249 INMVFLERILELPIHYNCYSDF----FKEHYPKSII-------MLHFIKY----KPWRSV 293
Query: 265 FGL---------KADLWLNALAKTPFMSDW----IDSIARVEIGSEKWHRYHSIVAYHYY 311
L +A WL L TPF +D+ ++ ++ S K H + ++Y
Sbjct: 294 SSLNGRLICYEAEASFWLANLFCTPFKNDFFKERLEMAKDQQMQSFKTHIRSKTIRDYFY 353
Query: 312 F 312
F
Sbjct: 354 F 354
>ref|NP_222868.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 377
Score = 98.2 bits (243), Expect = 4e-22
Identities = 93/340 (27%), Positives = 139/340 (40%), Gaps = 92/340 (27%)
Query: 16 IPIAFAFDKNYLIPAGACLYSLLE------------SIAKANKKIRYTLHALVVGLNEED 63
IPI AFD +Y IPAG LYS+L + NKK+ Y +H LV L+ E+
Sbjct: 5 IPIVIAFDNHYAIPAGVSLYSMLACAKSENPKSQNPQLQSDNKKLFYKIHCLVDNLSLEN 64
Query: 64 KAKLNQITEPFKEFAALEVRDIE-----------SFLDTIPNPFDE--DFTK-RFSKMVL 109
+ KL + PF FA+++ DI S +D I F + + K RFSKMV+
Sbjct: 65 QQKLKETLVPFSAFASVDFLDISTPNLYTTSVEPSVIDKIHEAFLQLNIYAKTRFSKMVM 124
Query: 110 VKYFLADLFPKYSKMVWSDVDVIFCNEFSADFLNLEENDENYFYGV-------------- 155
+ FLA LFP+Y K++ D D +F N+ S F ++Y++G
Sbjct: 125 CRLFLASLFPQYDKIIMFDADTLFLNDVSESFF---IPLDSYYFGAAKDFSSPKSLKHFQ 181
Query: 156 ----------LEVEKHHMME-------------GFLFCNLDYQRKKNFTLRMHELLRGNE 192
+ +H++ E GFL NL R LL
Sbjct: 182 TEREREPRQKFSLYEHYLKEKDMQIICENHYNVGFLIVNLKLWRADKLE---EHLLNLTH 238
Query: 193 AKGELDF-------TKWCWPNMKALGIEYCVFPYYYTIKDFSNAYLNENYKKTILEAREN 245
KG+ F T C+ + L PY Y NA+ +K + ++
Sbjct: 239 QKGQCVFCPEQDLLTLACYQKVLQL-------PYIY------NAHPFMANQKRFIPNQQE 285
Query: 246 PTIIHYDAWWGAVKPWDYPFGLKADLWLNALAKTPFMSDW 285
++H+ + KPW P L + W L KTPF +++
Sbjct: 286 IIMLHF---YFVGKPWILPTALYSKEWHEILLKTPFYAEY 322
>ref|NP_222915.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 394
Score = 97.1 bits (240), Expect = 8e-22
Identities = 93/331 (28%), Positives = 138/331 (41%), Gaps = 73/331 (22%)
Query: 16 IPIAFAFDKNYLIPAGACLYSLLESIAKANKKIR--YTLHALVVGLNEEDKAKLNQITEP 73
IPI AFD NY IPAG LYS+L + ++++ Y +H LV L+ E+ AKL + P
Sbjct: 5 IPIVVAFDNNYCIPAGVSLYSMLVHAKRERERVKLFYQIHCLVEDLSLENIAKLEETIAP 64
Query: 74 FKEFAALEVRDI-ESFLDTIPNPFDED-----------------FTKRFSKMVLVKYFLA 115
F F+++E DI + L+ N + D KRFSKM++ ++F A
Sbjct: 65 FSAFSSIEFLDITDKELEPRHNYYKLDPLIAGEIKKLYLKLNAFSQKRFSKMIMCRFFFA 124
Query: 116 DLFPKYSKMVWSDVDVIFCNEFSADFL--------------NLEENDENYFYGVLEVEKH 161
LFP+Y KM+ DVD +F + S F +L D N + E+ +
Sbjct: 125 SLFPQYDKMIMFDVDTLFVGDISESFFIPLGTHYFGAVREKDLIAMDRNSAKDLYELRQM 184
Query: 162 HMME-----------------------GFLFCNLDYQRKKNFTLRMHE-LLRGNEAKGEL 197
H GFL NL RK+N ++ E L NE
Sbjct: 185 HAKSIGIADAFPNLEETQILFDNYFNAGFLALNLKSWRKENLENQLIEFFLLKNEKLLFN 244
Query: 198 DFTKWCWPNMKALGIEYCVFPYYYTIKDFSNAYLNENYKKTILEARENPTIIHYDAWWGA 257
D C+ + PY Y ++L+ +I EA ++H+ WG
Sbjct: 245 DQDALCFVCRGRI----LELPYSYNAHP---SFLDTPSFPSIKEA----CMLHF---WGD 290
Query: 258 VKPWDYPFGLKADLWLNALAKTPFMSDWIDS 288
KPW + A W AL +TPF + ++
Sbjct: 291 -KPWKLLSVIGAKKWHEALIQTPFKDAYFNA 320
>ref|NP_223538.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 373
Score = 91.3 bits (225), Expect = 4e-20
Identities = 58/149 (38%), Positives = 77/149 (50%), Gaps = 17/149 (11%)
Query: 16 IPIAFAFDKNYLIPAGACLYSLLESIAKANK--KIRYTLHALVVGLNEEDKAKLNQITEP 73
IPI AFD NY IPAG LYS+L + + K+ Y +H LV L+ E+ KL + P
Sbjct: 17 IPIVVAFDNNYCIPAGVSLYSMLLNAKRERDGVKLFYQIHCLVDSLSAENAEKLKRTISP 76
Query: 74 FKEFAALEVRDIE----------SFLDTIPNPFDEDFTKRFSKMVLVKYFLADLFPKYSK 123
F F+ +E DI S L NPF + KRFSKM+L + LA +FP+Y K
Sbjct: 77 FSAFSGIEFCDISKNGAYPFKLVSQLFLRLNPFAK---KRFSKMILCRLLLASIFPQYEK 133
Query: 124 MVWSDVDVIFCNEFSADFLNLEENDENYF 152
++ DVD +F + S F D YF
Sbjct: 134 IIMFDVDTLFVGDISEGFFT--PMDGEYF 160
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 33.1 bits (74), Expect = 0.014
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 72 EPFKEFAALEVRDIESFLDTIPNPFDEDFTK-RFSKMVLVKY-FLADLFPKYSKMVWSDV 129
EP KE ++I S L+ +P DE+F K +K + Y + + + K +++ D
Sbjct: 19 EPKKETIENFEKEINSLLENVPRQDDEEFQKNEINKFLKNAYGYDCNTYEKVDSVIYVDK 78
Query: 130 DVIFCNEFSA--DFLNLEENDEN-----------YFYGVLEVEKHHMMEGFLFCN 171
+V E A + +N EN YF +E EK++ ++ + CN
Sbjct: 79 EVRVLIEVKALNNKTEFPKNRENPLSKAFCQMVLYFLEEIEKEKNNSLKHTIICN 133
>ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 543
Score = 31.6 bits (70), Expect = 0.041
Identities = 16/46 (34%), Positives = 27/46 (57%), Gaps = 7/46 (15%)
Query: 354 FSHAHAEIKENSLEMFLNHYFSHVYRLPK--KARKRLFRVFVKHCI 397
FS+ HAEI +N N +F V +PK K++ ++ +F +HC+
Sbjct: 319 FSNEHAEISQNK-----NDFFLGVPNIPKNDKSKMPIYTLFFQHCL 359
>ref|NP_222726.1| Carbonic anhydrase [Helicobacter pylori J99]
Length = 221
Score = 27.7 bits (60), Expect = 0.59
Identities = 24/101 (23%), Positives = 41/101 (39%), Gaps = 10/101 (9%)
Query: 277 AKTPFMSDWIDSIARVEIGSEKWHRYHSIVAYHYYFPLWKTEEQIAHDALKTFLDHYFSC 336
AKTP++++WI + + ++ + H + H+ W TE A L L + F
Sbjct: 118 AKTPYIANWIQFLEPI----KEELKNHPQFSNHFAKRSWLTERLNARLQLNNLLSYDF-- 171
Query: 337 IHAAIKQENLGMFLNHYFSHAHAEIKENSLEMFLNHYFSHV 377
I + L +F HY N F +H+F +
Sbjct: 172 IQERVINNELKIFGWHYIIETGRIYNYN----FESHFFEPI 208
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 26.9 bits (58), Expect = 1.0
Identities = 13/45 (28%), Positives = 26/45 (56%)
Query: 32 ACLYSLLESIAKANKKIRYTLHALVVGLNEEDKAKLNQITEPFKE 76
AC++SL E I+ + K++ + ++ L D+ K N+I + +E
Sbjct: 734 ACVWSLHEFISALSNKVKLSFKSVAKVLENIDENKFNEIKKNEQE 778
>ref|NP_223701.1| D-3-PHOSPHOGLYCERATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 524
Score = 25.8 bits (55), Expect = 2.3
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 62 EDKAKLNQITEPFKEFAALEVRDIESFLDTIPNPFDEDFTKRFSKMVLVKYFLADLFPKY 121
E K L + P+K +L + + F+ED K+ + F D+ PK
Sbjct: 396 EIKVSLKESASPYKNMLSLTLNAANGAISVSGTVFEEDIL----KLTEIDGFHIDIEPKG 451
Query: 122 SKMVWSDVDV 131
+++ + D+
Sbjct: 452 KMLLFRNTDI 461
>ref|NP_223700.1| putative [Helicobacter pylori J99]
Length = 170
Score = 25.4 bits (54), Expect = 3.0
Identities = 14/70 (20%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 303 HSIVAYHYYFPLWKTEEQIAHDALKTFLDHYFSCIHAAIKQENLGMFLNHYFSHAHAEI- 361
+ +V +H+ P + + + + +K D+ + C+ +K+E + ++ +H+ I
Sbjct: 87 YPVVEHHFEIPFEEKKREYSKLIIKDLKDYQWWCLKEILKKEQIDYAYDNTKNHSGLIIY 146
Query: 362 -KENSLEMFL 370
EN E L
Sbjct: 147 LDENKKERLL 156
>ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori J99]
Length = 773
Score = 25.4 bits (54), Expect = 3.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 148 DENYFYGVLEVEKHHMMEGFLFCNLDYQRKKNFTLRMHEL 187
D+N F VL E H+ + + NLD+ K+ + E+
Sbjct: 656 DDNLFKDVLFEEAHYTYQKLMEYNLDFLENKDILAFLEEV 695
>ref|NP_222891.1| LYSYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 501
Score = 25.0 bits (53), Expect = 3.9
Identities = 20/72 (27%), Positives = 34/72 (46%), Gaps = 3/72 (4%)
Query: 37 LLESIAKANKKIRYTLHALVVGLNEEDKAKLNQITEPFKEFAALEVRDIESFLDTIPNPF 96
L++ A K ++HAL + + L E F + +E+R + +LD I NP
Sbjct: 112 LVKGFPFATKTGELSIHALEFHILSKTIVPL---PEKFHGLSDIELRYRQRYLDLIVNPG 168
Query: 97 DEDFTKRFSKMV 108
+D K+ S +V
Sbjct: 169 VKDVFKKRSLIV 180
>ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 623
Score = 24.6 bits (52), Expect = 5.0
Identities = 30/148 (20%), Positives = 61/148 (40%), Gaps = 31/148 (20%)
Query: 121 YSKMVWSDVDVIFCNEFSADFLNLEENDENYFYGVLE---------VEKHHMMEGFLFCN 171
YSK + +++++F N + + + + + YG LE + ++ F +
Sbjct: 64 YSKRFYKNLELVFFNHSAFYYNQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGKIS 123
Query: 172 LDYQRKKNFTLRMHELLRGNEAKGELDFTKWCWPNMKALGIEYCV--------FPYYYTI 223
L +++ KN H+ ++ N K N+K G++ V FP + +
Sbjct: 124 LIFKKVKN-----HKKIQENLQK------LLSLENLKKEGVKENVARLLLEIFFPTPHFV 172
Query: 224 KDFSNAYLNENYKKTILEARENPTIIHY 251
KDF N+N+ L A + ++ Y
Sbjct: 173 KDFET---NKNFPSQHLNALKYIEMLFY 197
>ref|NP_224088.1| putative [Helicobacter pylori J99]
Length = 218
Score = 24.6 bits (52), Expect = 5.0
Identities = 17/63 (26%), Positives = 30/63 (46%), Gaps = 4/63 (6%)
Query: 52 LHALVVGLNEEDKAKLNQITEPFKEFAALEVRDIESFLDTIPNPFDEDFTKRFSKMVLVK 111
L ++GLN LN + KE E +D++ ++TI + + +RFS ++
Sbjct: 4 LTLFLIGLNALFALDLNALKTEIKETYLKEYKDLKLEIETI----NLEIPERFSHASILS 59
Query: 112 YFL 114
Y L
Sbjct: 60 YEL 62
>ref|NP_223461.1| IRON(III) DICITRATE TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 792
Score = 24.6 bits (52), Expect = 5.0
Identities = 14/39 (35%), Positives = 19/39 (47%), Gaps = 4/39 (10%)
Query: 352 HYFSHAHAEIKENSLEMFLNHYFSHVY---RLPKKARKR 387
+YF+H N +F NHYF+ Y R P AR +
Sbjct: 579 YYFNH-QVSFNANYFVIFANHYFTGRYGDNREPVNARSQ 616
>ref|NP_223069.1| putative [Helicobacter pylori J99]
Length = 438
Score = 24.6 bits (52), Expect = 5.0
Identities = 18/55 (32%), Positives = 25/55 (44%), Gaps = 5/55 (9%)
Query: 220 YYTIKDFSNAYLNENYKKTILEARENPTIIHYDAWWGAVKPWDYPFGLKADLWLN 274
+Y I +A+ NE K+ LE+R H A G + + PF K D LN
Sbjct: 209 FYAINQKKSAFANEASKELPLESR---VFYHLQAIEGLLNQLNIPF--KRDFELN 258
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 455
Score = 24.3 bits (51), Expect = 6.6
Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 2/108 (1%)
Query: 315 WKTEEQIAHDALKTFLDHYFSCIHAAIKQENLGMFLNHYFSHAHAEIKENSLEMFLNHYF 374
W + + + + F + Y + +K +L + ++ENS+ + YF
Sbjct: 175 WDEKNPNSVNIPQEFAEIYKLAKQSGMKSSHLDEIMQLSLELMPLRMRENSVT--IKRYF 232
Query: 375 SHVYRLPKKARKRLFRVFVKHCILIPLKSLVGKTLRLLKLHALAKKIL 422
V R R + K +++ + VGKT L KL A ++L
Sbjct: 233 REVLRKIILCRPEDLNLRQKRILMLVGPTGVGKTTTLAKLAARYSRML 280
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 23.9 bits (50), Expect = 8.6
Identities = 9/22 (40%), Positives = 13/22 (58%)
Query: 186 ELLRGNEAKGELDFTKWCWPNM 207
++L + K E DFT CW N+
Sbjct: 145 QVLTQKKEKEEKDFTDSCWKNL 166
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.325 0.139 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,209
Number of Sequences: 1491
Number of extensions: 24602
Number of successful extensions: 124
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 27
length of query: 431
length of database: 494,079
effective HSP length: 80
effective length of query: 351
effective length of database: 374,799
effective search space: 131554449
effective search space used: 131554449
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)